Guide to the Human Genome
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Name: SLC4A8 Sequence: fasta or formatted (1044aa) NCBI GI: 90568034
Description:

solute carrier family 4, sodium bicarbonate cotransporter, member 8 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [1093aa] solute carrier family 4, sodium bicarbonate cotransporter, member...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         61           2
 C cysteine            2.3         24           1
 D aspartate           4.6         48           2
 E glutamate           6.8         71           3
 F phenylalanine       4.9         51           2
 G glycine             6.5         68           2
 H histidine           3.8         40           3
 I isoleucine          6.7         70           2
 K lysine              5.5         57           4
 L leucine            11.5        120           2
 M methionine          3.0         31           2
 N asparagine          2.4         25           2
 P proline             5.5         57           2
 Q glutamine           3.2         33           2
 R arginine            4.5         47           3
 S serine              6.4         67           2
 T threonine           5.3         55           2
 V valine              7.4         77           2
 W tryptophan          1.5         16           2
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 4, sodium bicarbonate cotransp... 
SLC4A8                0.984   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A10               0.783   solute carrier family 4, sodium bicarbonate transpo...
SLC4A7                0.583   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.503   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.503   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.489   solute carrier family 4, sodium bicarbonate cotranspo...
SLC4A5                0.453   sodium bicarbonate transporter 4 isoform c 
SLC4A5                0.448   sodium bicarbonate transporter 4 isoform a 
SLC4A9                0.374   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A2                0.312   solute carrier family 4, anion exchanger, member 2 ...
SLC4A3                0.295   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.295   solute carrier family 4, anion exchanger, member 3 ...
SLC4A1                0.258   solute carrier family 4, anion exchanger, member 1 [H...
SLC4A11               0.095   solute carrier family 4 member 11 
LOC100292916          0.005   PREDICTED: hypothetical protein 
LOC100290781          0.005   PREDICTED: hypothetical protein XP_002347101 
LOC100286938          0.005   PREDICTED: hypothetical protein XP_002342984 
NFATC3                0.004   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.004   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.004   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.004   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC4                0.004   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.004   nuclear factor of activated T-cells, cytoplasmic, ca...
HRC                   0.004   histidine rich calcium binding protein precursor [Hom...
RGAG4                 0.004   retrotransposon gag domain containing 4 
LIG1                  0.004   DNA ligase I 
LMOD2                 0.004   leiomodin 2 (cardiac) 
CD180                 0.003   CD180 molecule 
TEX28                 0.003   testis expressed 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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