Guide to the Human Genome
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Name: C15orf33 Sequence: fasta or formatted (508aa) NCBI GI: 153792756
Description:

hypothetical protein LOC196951

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         27           1
 C cysteine            1.4          7           1
 D aspartate           4.3         22           3
 E glutamate           9.1         46           4
 F phenylalanine       7.1         36           2
 G glycine             2.8         14           2
 H histidine           3.3         17           1
 I isoleucine          7.1         36           2
 K lysine             10.4         53           4
 L leucine             8.9         45           2
 M methionine          1.6          8           1
 N asparagine          3.5         18           2
 P proline             4.3         22           2
 Q glutamine           3.5         18           1
 R arginine            5.1         26           2
 S serine             10.0         51           7
 T threonine           4.5         23           3
 V valine              1.8          9           1
 W tryptophan          2.4         12           3
 Y tyrosine            3.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196951 
LOC646851             0.073   PREDICTED: hypothetical protein 
LOC646851             0.073   PREDICTED: hypothetical protein 
LOC646851             0.073   PREDICTED: hypothetical protein 
LOC731605             0.009   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.009   PREDICTED: similar to BCL2-associated transcription...
MLLT1                 0.008   myeloid/lymphoid or mixed-lineage leukemia (trithora...
FAM133B               0.007   hypothetical protein LOC257415 isoform 2 
FAM133B               0.007   hypothetical protein LOC257415 isoform 1 
FAM133A               0.007   hypothetical protein LOC286499 
RSF1                  0.006   remodeling and spacing factor 1 
PPP1R10               0.006   protein phosphatase 1, regulatory subunit 10 
PAK1                  0.006   p21-activated kinase 1 isoform 1 
PAK1                  0.006   p21-activated kinase 1 isoform 2 
BCLAF1                0.006   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.006   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.006   BCL2-associated transcription factor 1 isoform 1 [Hom...
SYTL2                 0.006   synaptotagmin-like 2 isoform a 
SYTL2                 0.006   synaptotagmin-like 2 isoform i 
SYTL2                 0.006   synaptotagmin-like 2 isoform g 
CEP290                0.006   centrosomal protein 290kDa 
CCDC50                0.006   Ymer protein long isoform 
CEP110                0.006   centrosomal protein 110kDa 
SMC1A                 0.005   structural maintenance of chromosomes 1A 
BRD2                  0.005   bromodomain containing 2 
BRD2                  0.005   bromodomain containing 2 
FBXO6                 0.005   F-box only protein 6 
LIMCH1                0.005   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.005   LIM and calponin homology domains 1 isoform a [Homo...
SPATA1                0.005   spermatogenesis associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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