Guide to the Human Genome
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Name: LOC646851 Sequence: fasta or formatted (477aa) NCBI GI: 239746726
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {477aa} PREDICTED: hypothetical protein
alt mRNA {477aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         23           2
 C cysteine            2.9         14           3
 D aspartate           4.0         19           1
 E glutamate           7.3         35           2
 F phenylalanine       5.5         26           2
 G glycine             2.9         14           2
 H histidine           3.1         15           2
 I isoleucine          2.7         13           1
 K lysine              9.9         47           2
 L leucine             8.6         41           3
 M methionine          1.9          9           1
 N asparagine          5.2         25           2
 P proline             5.2         25           2
 Q glutamine           4.4         21           2
 R arginine            6.5         31           3
 S serine             11.3         54           4
 T threonine           4.8         23           2
 V valine              3.4         16           2
 W tryptophan          1.9          9           2
 Y tyrosine            3.6         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC646851             1.000   PREDICTED: hypothetical protein 
LOC646851             1.000   PREDICTED: hypothetical protein 
C15orf33              0.077   hypothetical protein LOC196951 
ANK3                  0.014   ankyrin 3 isoform 1 
ZCCHC7                0.010   zinc finger, CCHC domain containing 7 
DGCR8                 0.010   DiGeorge syndrome critical region gene 8 
FUSIP1                0.008   FUS interacting protein (serine-arginine rich) 1 iso...
EIF4B                 0.007   eukaryotic translation initiation factor 4B 
CENPF                 0.007   centromere protein F 
MYOCD                 0.006   myocardin isoform 1 
MYOCD                 0.006   myocardin isoform 2 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.006   TRAF2 and NCK interacting kinase isoform 1 
MYOCD                 0.006   myocardin isoform 3 
MLLT3                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithor...
PPIG                  0.006   peptidylprolyl isomerase G 
GPR179                0.006   GPR158-like 1 
BIN2                  0.006   bridging integrator 2 
ERC1                  0.006   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.006   RAB6-interacting protein 2 isoform delta 
CUL4B                 0.006   cullin 4B isoform 2 
CUL4B                 0.006   cullin 4B isoform 1 
ZNF469                0.006   zinc finger protein 469 
NEFH                  0.006   neurofilament, heavy polypeptide 200kDa 
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
PPP1R12C              0.006   protein phosphatase 1, regulatory subunit 12C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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