CCDC50 27704

Name: CCDC50	Sequence: fasta or formatted (482aa)		NCBI GI: 41281911
Description: Ymer protein long isoform		Referenced in: Coiled-Coil Proteins
Other entries for this name: alt prot [306aa] Ymer protein short isoform
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 34 2 C cysteine 1.2 6 1 D aspartate 6.0 29 2 E glutamate 12.2 59 3 F phenylalanine 1.9 9 1 G glycine 3.3 16 1 H histidine 5.6 27 2 I isoleucine 2.7 13 1 K lysine 10.0 48 2 L leucine 6.8 33 2 M methionine 1.5 7 1 N asparagine 2.3 11 2 P proline 5.4 26 4 Q glutamine 7.7 37 2 R arginine 8.9 43 3 S serine 8.1 39 5 T threonine 3.3 16 1 V valine 3.1 15 2 W tryptophan 0.8 4 1 Y tyrosine 2.1 10 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Ymer protein long isoform CCDC50 0.323 Ymer protein short isoform TCHH 0.044 trichohyalin RBM25 0.042 RNA binding motif protein 25 LOC283685 0.041 PREDICTED: golgi autoantigen, golgin subfamily a-li... EIF3A 0.038 eukaryotic translation initiation factor 3, subunit 1... LOC283685 0.034 PREDICTED: golgi autoantigen, golgin subfamily a-li... MYH1 0.033 myosin, heavy chain 1, skeletal muscle, adult [Homo... EIF5B 0.032 eukaryotic translation initiation factor 5B TNIK 0.028 TRAF2 and NCK interacting kinase isoform 8 TNIK 0.028 TRAF2 and NCK interacting kinase isoform 7 LOC645202 0.028 PREDICTED: hypothetical protein LOC645202 PPIG 0.027 peptidylprolyl isomerase G LOC727832 0.026 golgi autoantigen, golgin subfamily a-like LOC283767 0.026 golgi autoantigen, golgin subfamily a-like LOC440243 0.026 PREDICTED: Putative golgin subfamily A member 6-lik... TNIK 0.026 TRAF2 and NCK interacting kinase isoform 2 TNIK 0.026 TRAF2 and NCK interacting kinase isoform 1 MYH6 0.026 myosin heavy chain 6 CCDC88C 0.026 DVL-binding protein DAPLE MYH7 0.025 myosin, heavy chain 7, cardiac muscle, beta TNIK 0.025 TRAF2 and NCK interacting kinase isoform 6 TNIK 0.025 TRAF2 and NCK interacting kinase isoform 5 TNIK 0.025 TRAF2 and NCK interacting kinase isoform 4 TNIK 0.025 TRAF2 and NCK interacting kinase isoform 3 ITSN1 0.025 intersectin 1 isoform ITSN-s ITSN1 0.025 intersectin 1 isoform ITSN-l AKAP9 0.025 A-kinase anchor protein 9 isoform 3 PLEC1 0.025 plectin 1 isoform 11 PLEC1 0.025 plectin 1 isoform 10 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.