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Search of human proteins with 153792042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153792042 G protein-coupled receptor 178 [Homo sapiens]
(612 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153792042 G protein-coupled receptor 178 [Homo sapiens] 1252 0.0
gi|50541963 G protein-coupled receptor 177 isoform 2 [Homo sapiens] 57 4e-08
gi|31542745 G protein-coupled receptor 177 isoform 1 [Homo sapiens] 57 4e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 50 8e-06
gi|39812378 RAN binding protein 9 [Homo sapiens] 48 2e-05
gi|122937321 UNC homeobox [Homo sapiens] 47 5e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 1e-04
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 3e-04
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 3e-04
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 3e-04
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 44 4e-04
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 42 0.001
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 42 0.001
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 42 0.001
gi|91208420 bassoon protein [Homo sapiens] 42 0.002
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 42 0.002
gi|38788260 bromodomain PHD finger transcription factor isoform ... 41 0.003
gi|38788274 bromodomain PHD finger transcription factor isoform ... 41 0.003
gi|121114296 caudal type homeobox 1 [Homo sapiens] 41 0.003
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.004
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 0.004
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 41 0.004
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 40 0.005
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo ... 40 0.005
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
>gi|153792042 G protein-coupled receptor 178 [Homo sapiens]
Length = 612
Score = 1252 bits (3240), Expect = 0.0
Identities = 612/612 (100%), Positives = 612/612 (100%)
Query: 1 MGAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS 60
MGAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS
Sbjct: 1 MGAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS 60
Query: 61 RPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPLCSELKHLCRRLR 120
RPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPLCSELKHLCRRLR
Sbjct: 61 RPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPLCSELKHLCRRLR 120
Query: 121 EAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFICFGLTIFVGIRGPKVIQ 180
EAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFICFGLTIFVGIRGPKVIQ
Sbjct: 121 EAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFICFGLTIFVGIRGPKVIQ 180
Query: 181 TSAANFSLNNSKKLKPIQILSNPLSTYNQQLWLTCVVELDQSKETSIKTSFPMTVKVDGV 240
TSAANFSLNNSKKLKPIQILSNPLSTYNQQLWLTCVVELDQSKETSIKTSFPMTVKVDGV
Sbjct: 181 TSAANFSLNNSKKLKPIQILSNPLSTYNQQLWLTCVVELDQSKETSIKTSFPMTVKVDGV 240
Query: 241 AQDGTTMYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNF 300
AQDGTTMYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNF
Sbjct: 241 AQDGTTMYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNF 300
Query: 301 TWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLY 360
TWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLY
Sbjct: 301 TWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLY 360
Query: 361 NDPFFPLSFLVNSWLPGMLDDLFQSMFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFI 420
NDPFFPLSFLVNSWLPGMLDDLFQSMFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFI
Sbjct: 361 NDPFFPLSFLVNSWLPGMLDDLFQSMFLCALLLFWLCVYHGIRVQGERKCLTFYLPKFFI 420
Query: 421 VGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRAC 480
VGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRAC
Sbjct: 421 VGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRAC 480
Query: 481 SELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHYQNSAEFLS 540
SELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHYQNSAEFLS
Sbjct: 481 SELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHYQNSAEFLS 540
Query: 541 FYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQA 600
FYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQA
Sbjct: 541 FYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQA 600
Query: 601 IRAKYKEESDSD 612
IRAKYKEESDSD
Sbjct: 601 IRAKYKEESDSD 612
>gi|50541963 G protein-coupled receptor 177 isoform 2 [Homo sapiens]
Length = 543
Score = 57.4 bits (137), Expect = 4e-08
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 34/215 (15%)
Query: 378 MLDDLFQSMFLCALLLFWL--CVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQ 435
+ D+ Q +F LL FW+ C H + Q ER + Y + VG + + S L I+
Sbjct: 296 LFGDIRQGIFYAMLLSFWIIFCGEH-MMDQHERNHIAGYWKQ---VGPIAVGSFCLFIFD 351
Query: 436 TVN---ELHDPMYQ-YRVDTGNFQGMKVFFMVVAAV----YILYLLFLIVR--------- 478
+L +P Y + D G M F++VA + Y L+L F++ +
Sbjct: 352 MCERGVQLTNPFYSIWTTDIGTELAMA--FIIVAGICLCLYFLFLCFMVFQVFRNISGKQ 409
Query: 479 ----ACSELRHMPYVDL--RLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHY 532
A S++R + Y L R KFL +T +++ + +QV + ++ T
Sbjct: 410 SSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIV---SQVTEGHWKWGGVTVQ 466
Query: 533 QNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQ 567
NSA F YG+ N Y++ L F+Y+PS E Q
Sbjct: 467 VNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQ 501
>gi|31542745 G protein-coupled receptor 177 isoform 1 [Homo sapiens]
Length = 541
Score = 57.4 bits (137), Expect = 4e-08
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 34/215 (15%)
Query: 378 MLDDLFQSMFLCALLLFWL--CVYHGIRVQGERKCLTFYLPKFFIVGLLWLASVTLGIWQ 435
+ D+ Q +F LL FW+ C H + Q ER + Y + VG + + S L I+
Sbjct: 298 LFGDIRQGIFYAMLLSFWIIFCGEH-MMDQHERNHIAGYWKQ---VGPIAVGSFCLFIFD 353
Query: 436 TVN---ELHDPMYQ-YRVDTGNFQGMKVFFMVVAAV----YILYLLFLIVR--------- 478
+L +P Y + D G M F++VA + Y L+L F++ +
Sbjct: 354 MCERGVQLTNPFYSIWTTDIGTELAMA--FIIVAGICLCLYFLFLCFMVFQVFRNISGKQ 411
Query: 479 ----ACSELRHMPYVDL--RLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHY 532
A S++R + Y L R KFL +T +++ + +QV + ++ T
Sbjct: 412 SSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIV---SQVTEGHWKWGGVTVQ 468
Query: 533 QNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQ 567
NSA F YG+ N Y++ L F+Y+PS E Q
Sbjct: 469 VNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQ 503
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 49.7 bits (117), Expect = 8e-06
Identities = 40/107 (37%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 4 APSPTQASSRGGGPGP-PAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRP 62
A PT + G GPGP P P AV+S A GA PS P T A PPP P
Sbjct: 134 ATPPTSGAPPGSGPGPTPTPPPAVTS---APPGAPPPTPPSSGVPTTPPQAGGPPP---P 187
Query: 63 ARQQPDPQCWEKRGGAGGDTKGG--AAGPGPGRLRGMDAEYPAFEPP 107
P P K+G G KGG GP PG G+ +PP
Sbjct: 188 PAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234
Score = 38.1 bits (87), Expect = 0.024
Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 5 PSPTQASSR-----GGGPGPPAPTRAVSSSSRA-----RGGALSALGPSPAR---PLTTS 51
P P Q SS+ G GP P + +SSS GA GP P P TS
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159
Query: 52 PAPAPPPRSRPARQQPD--PQCWEKRGGAGGDTKGGAA--GPGPGRLRG 96
P PP + P+ P PQ AGG AA GPGPG +G
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQ-------AGGPPPPPAAVPGPGPGPKQG 201
Score = 31.6 bits (70), Expect = 2.2
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
+P P ++ GP P P + G + P P P P PP +P
Sbjct: 33 SPPPGMGLNQNRGPMGPGP---------GQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPP 83
Query: 64 RQQ----PDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPA 103
Q P P ++ D+ GPG G+ + PA
Sbjct: 84 PHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPA 127
Score = 29.6 bits (65), Expect = 8.5
Identities = 24/83 (28%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPA-----PP 57
A P P +G GPG P + G LS G P P P P
Sbjct: 190 AVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHP 249
Query: 58 PRSRPARQQPDPQCWEKRGGAGG 80
P + Q P P GG GG
Sbjct: 250 PYHQQHHQGPPP------GGPGG 266
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 48.1 bits (113), Expect = 2e-05
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPP---- 58
A P+ + SS G PG A + +++ AL P P P T +P P PPP
Sbjct: 37 APPAVSAGSSPAGSPGGGAGGEGLGAAA----AALLLHPPPPPPPATAAPPPPPPPPPPP 92
Query: 59 --RSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMD--AEYPAFEPPLCSELKH 114
+ PA P P G A G G A P P + G A +P + L + K
Sbjct: 93 ASAAAPASGPPAPP-----GLAAGPGPAGGA-PTPALVAGSSAAAPFPHGDSALNEQEKE 146
Query: 115 LCRRLREAYRELKEDLTP 132
L RRL+ Y + E TP
Sbjct: 147 LQRRLKRLYPAVDEQETP 164
Score = 29.6 bits (65), Expect = 8.5
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 15 GGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQPDPQCWEK 74
G P PP P + LS P+ P++ PAPP S + P
Sbjct: 3 GQPPPPPPQQQQQQQQ------LSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPG---- 52
Query: 75 RGGAGGDTKGGAA 87
GGAGG+ G AA
Sbjct: 53 -GGAGGEGLGAAA 64
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 47.0 bits (110), Expect = 5e-05
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRP 62
A SP +S G PAP R ++S++ GG A P PAP+P P RP
Sbjct: 440 ARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGPRP 499
Query: 63 ARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAE 100
P P E+ G G AAGP P +D +
Sbjct: 500 ----PSPA--EEPATCGVPEPGAAAGPSPPEGEELDMD 531
Score = 35.0 bits (79), Expect = 0.20
Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 17 PGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSP----------APAPPPRSRPARQQ 66
PG + A SS S + GG LS P P P P APAPP PA
Sbjct: 222 PGGLSLHSAPSSDSDSGGGGLSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEP-PAPGT 280
Query: 67 PDPQCW-EKRGGAGGDTKGG------AAGPGPG 92
DP + +R GAG + G AA GPG
Sbjct: 281 CDPAFYPSQRSGAGPQPRPGRPADKDAASCGPG 313
Score = 34.7 bits (78), Expect = 0.26
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 6 SPTQASSRGGG-----PGPPAPTRAVSSSSRARGGALSALGP--SPARPLTTSPAPAPPP 58
+P+ S GGG P P P A + A G A +A P P P T PA P
Sbjct: 230 APSSDSDSGGGGLSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQ 289
Query: 59 RSRPARQQPDPQCWEKRGGAGGDTKGGAAGPG 90
RS A QP P G D + GPG
Sbjct: 290 RS-GAGPQPRP-------GRPADKDAASCGPG 313
Score = 31.6 bits (70), Expect = 2.2
Identities = 30/113 (26%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 2 GAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSR 61
GA P + PPAP S + + G + P + AP P
Sbjct: 399 GAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPA 458
Query: 62 PARQQPDPQCWEKRGGAGGDTKGGAAG-----PGPGRLRGMDAEYPAFEPPLC 109
P R E GG G G AG P P G PA EP C
Sbjct: 459 PFRDLASAAATE--GGGGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATC 509
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.8 bits (107), Expect = 1e-04
Identities = 39/115 (33%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 2 GAAPSPTQASSR---GGGP---GPPAPTRAVSSSSRARG---------GALSALGPSPAR 46
GAAP P A GGGP GPP+P R + + A G+ + P PA
Sbjct: 84 GAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAA 143
Query: 47 P-LTTSPAPAPPPRSRPARQQPDPQCWEKRGGAG-GDTKGGAAGPGPGRLRGMDA 99
+ P PAP ++PA P R G G G G GPGPG+ G A
Sbjct: 144 AAVAAGPEPAPAGPAKPA----GPAALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194
Score = 39.3 bits (90), Expect = 0.011
Identities = 35/109 (32%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 2 GAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGP-SPARPLT-TSPAP----- 54
GA P+ + G P PP RA R GG GP SP RPL PAP
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRA-----RPGGGGPQRPGPPSPRRPLVPAGPAPPAAKL 126
Query: 55 -----------APPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPG 92
AP P + P+P AG AGPGPG
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Score = 38.1 bits (87), Expect = 0.024
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 15 GGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPA---PAPPPRSRPARQQPDPQC 71
G PPAP ++ A +A P P P T + PA PP + PA P P
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPA--VPPPAA 302
Query: 72 WEKRGGAG-----GDTKGGAAG----PGPGRLR-----GMDAEYP 102
+ G AG GG AG PGPG G+ AE P
Sbjct: 303 AQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESP 347
Score = 34.3 bits (77), Expect = 0.34
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 3 AAPSPTQASSRGG-GPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPR-- 59
AAPSP A + PP P A ++ +R G PA P T +PA PP
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG--------HPAGPPTAAPAVPPPAAAQ 304
Query: 60 ---SRPARQQPDPQCWEKRGGAGGDTKG-GAAGPGPG 92
S A P P G +G G AA P PG
Sbjct: 305 NGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPG 341
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 44.7 bits (104), Expect = 3e-04
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 19 PPAPTRAVSSSSRARGGA----LSALGPSPARPLTTSPAPAPPPRSRPARQQPD-PQCWE 73
PP PTR+ + +R G A G A P APA PP RP Q D PQ WE
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQSWE 150
Query: 74 K--RGGAGGDTKGGAAGPGPGRL 94
+ RG GAA P G L
Sbjct: 151 QKPRGPGRSARSAGAAAPPAGGL 173
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 44.7 bits (104), Expect = 3e-04
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 19 PPAPTRAVSSSSRARGGA----LSALGPSPARPLTTSPAPAPPPRSRPARQQPD-PQCWE 73
PP PTR+ + +R G A G A P APA PP RP Q D PQ WE
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQSWE 150
Query: 74 K--RGGAGGDTKGGAAGPGPGRL 94
+ RG GAA P G L
Sbjct: 151 QKPRGPGRSARSAGAAAPPAGGL 173
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 44.7 bits (104), Expect = 3e-04
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 19 PPAPTRAVSSSSRARGGA----LSALGPSPARPLTTSPAPAPPPRSRPARQQPD-PQCWE 73
PP PTR+ + +R G A G A P APA PP RP Q D PQ WE
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQSWE 150
Query: 74 K--RGGAGGDTKGGAAGPGPGRL 94
+ RG GAA P G L
Sbjct: 151 QRPRGPGRSARSAGAAAPPAGGL 173
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 3e-04
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 3 AAPSPTQASSRGGGPGPP-----APTRAVSSSSRARGGALSALGPSPARPLTTSP----A 53
+A +P + R P PP + +RA SSS G GP P A
Sbjct: 399 SASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRA 458
Query: 54 PAPPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGP 91
PPR+RPA P P +RGG G + + GP P
Sbjct: 459 KERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHP 496
Score = 38.1 bits (87), Expect = 0.024
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 6 SPTQASSRGGGPGPPAPTRAVSSSSR--ARGGALSALGPSPARPLTTSP---------AP 54
S +++ S GG G +P R S R A GG + P +P + SP AP
Sbjct: 295 SGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAP 354
Query: 55 APPPRSRPARQQPDPQCWEKRGGAGGDTKGGA 86
PP R ++ P P+ G GG GGA
Sbjct: 355 TPPAR---GKESPSPRSAPSSQGRGGRAAGGA 383
Score = 33.5 bits (75), Expect = 0.59
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRP 62
AA +PT + P P + + RA GGA R + S A AP R R
Sbjct: 350 AAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGR- 408
Query: 63 ARQQPDPQCWE----KRGGAGGDTKGGAAGPGPG 92
R +P P R + D+ G PGPG
Sbjct: 409 RRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG 442
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 43.9 bits (102), Expect = 4e-04
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 2 GAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSR 61
G P+ + S+ G G PAP S+ A S +PA + A APP S
Sbjct: 326 GPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPA---PYAQAVAPPAPSG 382
Query: 62 PARQQPDPQCWEKRGGAGGDTKGG--------AAGPGPGRLRG 96
P+ QP P + GG GG + GG +AG G G+ G
Sbjct: 383 PSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNG 425
Score = 30.8 bits (68), Expect = 3.8
Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGAL----------SALGPSPARPL------ 48
P P GGG G + SSS+ + GG S + SPA
Sbjct: 388 PRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGG 447
Query: 49 --TTSPAPAPP--PRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAF 104
+S A PP P + P +P G G G GP L + P+
Sbjct: 448 NNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 507
Query: 105 EPPLCSELK 113
P S+ K
Sbjct: 508 PTPSFSDAK 516
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 42.4 bits (98), Expect = 0.001
Identities = 45/146 (30%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 2 GAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSR 61
G P +A RGG P +R S R SA P PA P + SP P P R R
Sbjct: 24 GGWARPARAVRRGGHPAHFCWSRPPVSRERDDP---SAPRPVPALPSSPSPPPPRPFRGR 80
Query: 62 PARQQ-----PDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPLCSELKHLC 116
+ R GA D GA G G GRL G D + +PP
Sbjct: 81 GPHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLPGDDDDNDEEQPPPLPLTGRCW 140
Query: 117 RR--LREAYRELKEDLTPFKDDRYYR 140
R RE + E P + D YR
Sbjct: 141 ARAWAREGASPVVEKRCPLQRDGVYR 166
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 6 SPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGP------------SPARPLTTSPA 53
SP Q+ + GP P P R + SR G + P PA+PL
Sbjct: 1044 SPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRP 1103
Query: 54 PAPPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEP 106
P P P + P R P + G + + G AGPGP G P P
Sbjct: 1104 PPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPA---GYSTARPTIPP 1153
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRP 62
A SP QAS G PG +P +A + + G P+ A P T P A P R+ P
Sbjct: 17 AGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASP 76
Query: 63 ARQQP 67
A+ P
Sbjct: 77 AQASP 81
Score = 36.6 bits (83), Expect = 0.069
Identities = 21/58 (36%), Positives = 24/58 (41%)
Query: 6 SPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
SP QAS P P RA + + G P A P SPA A P R+ PA
Sbjct: 35 SPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASPA 92
Score = 33.5 bits (75), Expect = 0.59
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPP 57
A SP QAS G PG +P +A + + + P+ A P SPA A P
Sbjct: 37 AQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASP 91
Score = 33.5 bits (75), Expect = 0.59
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 6 SPTQASSRGGGPGPPAPTRAV---SSSSRARGGALSALGPSPARP--LTTSPAPAPPPRS 60
SP QAS P +P A SSS R+ +++ SP R + +P A P RS
Sbjct: 75 SPAQASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPVGAVPIRS 134
Query: 61 RPARQQP 67
PAR P
Sbjct: 135 SPARSAP 141
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 42.0 bits (97), Expect = 0.002
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 2 GAAPSPTQASSRGGGPGP-PAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS 60
GA P G GPGP P P S+ A GG L A G + + + P P P P
Sbjct: 10 GAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGP 69
Query: 61 RPA------RQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPA 103
P R P +R + + A PG R A+ PA
Sbjct: 70 GPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPA 118
Score = 32.3 bits (72), Expect = 1.3
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
A P S GP P P RA + G +A P R PAP P P A
Sbjct: 3818 AGKPQPGPSTATGPQPAGPPRA----EQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKA 3873
Query: 64 RQQPDPQCWEKRGGAGGD 81
+P G G D
Sbjct: 3874 GARPGGTPGAPAGQPGAD 3891
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 7 PTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPAR--PLTTSPAPAPPPRSRPAR 64
P Q SRG PG P P + ++R A S GP+ A P +P PP ++P+
Sbjct: 261 PDQERSRG--PGGPQPGSRQAETAR----ATSVPGPAQAAAPPEVGRVSPQPPQPTKPST 314
Query: 65 QQPDPQCWE 73
+P P E
Sbjct: 315 AEPRPPAGE 323
Score = 31.2 bits (69), Expect = 2.9
Identities = 19/68 (27%), Positives = 24/68 (35%)
Query: 2 GAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSR 61
G P P++A S PP + S S G + + T SPAPA
Sbjct: 1461 GGTPQPSRAYSYFASSSPPLSPSSPSESPTFSPGKMGPRATAEFSTQTPSPAPASDMPRS 1520
Query: 62 PARQQPDP 69
P P P
Sbjct: 1521 PGAPTPSP 1528
Score = 30.8 bits (68), Expect = 3.8
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 18 GPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQPDPQCWEKRGG 77
G PAP++ A GP +PL + P P P P A+ +P + G
Sbjct: 375 GQPAPSKGTPKI--VFNDASKEAGP---KPLGSGPGPGPAP---GAKTEPGARMGPGSGP 426
Query: 78 AGGDTKGGAAGPGPGRLRGMDAEYPAFEPPLCSELKHLC 116
GG P GR A A +P + + +C
Sbjct: 427 GALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKERAIC 465
Score = 30.8 bits (68), Expect = 3.8
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 19 PPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPA-PPPRSRPARQ-QPDPQCWEKRG 76
PPAP + S + G + P+ P +T PAPA PP S PA P+ Q + G
Sbjct: 3058 PPAPQYSAGSGGPTQNGFPAHQAPTYPGP-STYPAPAFPPGASYPAEPGLPNQQAFRPTG 3116
Query: 77 GAGGDT 82
G T
Sbjct: 3117 HYAGQT 3122
Score = 29.6 bits (65), Expect = 8.5
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 8 TQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQP 67
+Q ++RG P P + + + G +A GP PA P ++ +Q
Sbjct: 3803 SQPTTRGSAPAASQP------AGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGR 3856
Query: 68 DPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYP 102
PQ G K GA PG G A P
Sbjct: 3857 APQAQPAPGPGPAGVKAGAR---PGGTPGAPAGQP 3888
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/104 (32%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS--R 61
AP P GGG GP P ++S RGG + GP P SPA A S
Sbjct: 15 APPPPLKDESGGGGGPTVPPHQEAASGELRGG--TERGPGRCAPSAGSPAAAVGRESPGA 72
Query: 62 PARQQPDPQCWEKRGGAG----------GDTKGGAAGPGPGRLR 95
A PQ + RGG D G AA P G R
Sbjct: 73 AATSSSGPQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEER 116
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 1 MGAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS 60
+G S + SSRG A + S RGG+ S P P P PAPP S
Sbjct: 36 IGGLRSRHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPP-------PPPAPPSTS 88
Query: 61 RPARQQPDPQCWEKRGGAGGDTKGGAAG 88
P R RGG GG T GG G
Sbjct: 89 APGR--------GGRGGGGGRTGGGGGG 108
Score = 31.6 bits (70), Expect = 2.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 3 AAPSPTQASSRGGGPGPP-----APTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPP 57
A+ + T S+ G G +P V S++GP+ A+P T P+ P
Sbjct: 2347 ASTTTTTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSAQPQ 2406
Query: 58 PRSRP-ARQQPDPQ 70
P+++P + QP+ Q
Sbjct: 2407 PQTQPQSPAQPEVQ 2420
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 1 MGAAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS 60
+G S + SSRG A + S RGG+ S P P P PAPP S
Sbjct: 36 IGGLRSRHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPP-------PPPAPPSTS 88
Query: 61 RPARQQPDPQCWEKRGGAGGDTKGGAAG 88
P R RGG GG T GG G
Sbjct: 89 APGR--------GGRGGGGGRTGGGGGG 108
Score = 31.6 bits (70), Expect = 2.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 3 AAPSPTQASSRGGGPGPP-----APTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPP 57
A+ + T S+ G G +P V S++GP+ A+P T P+ P
Sbjct: 2221 ASTTTTTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSAQPQ 2280
Query: 58 PRSRP-ARQQPDPQ 70
P+++P + QP+ Q
Sbjct: 2281 PQTQPQSPAQPEVQ 2294
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 41.2 bits (95), Expect = 0.003
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARP-----LTTSPAPAPPPR 59
P+P + GPGP AP A S +S A G P PA P L P P
Sbjct: 66 PAPKDDWAAAYGPGPAAP--AASPASLAFGPPPD-FSPVPAPPGPGPGLLAQPLGGPGTP 122
Query: 60 SRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMD 98
S P Q+P P W +R A G G G G+ R D
Sbjct: 123 SSPGAQRPTPYEWMRRSVAAG------GGGGSGKTRTKD 155
Score = 33.5 bits (75), Expect = 0.59
Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 31/118 (26%)
Query: 5 PSPTQASSRGGGP---GPPAPTRA------VSSSSRARGGAL-----------------S 38
P P + +S G GP GPPAP A SS S +
Sbjct: 15 PGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAA 74
Query: 39 ALGPSPARPLTT--SPAPAPPPRSRPARQQPDP---QCWEKRGGAGGDTKGGAAGPGP 91
A GP PA P + S A PPP P P P + GG G + GA P P
Sbjct: 75 AYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTP 132
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.8 bits (94), Expect = 0.004
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
AP PT+ + GPG + +A G SA P +P + P PA PP +P
Sbjct: 433 APGPTKTPVQQPGPGK-------IPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPG 485
Query: 64 RQQPDPQCWEKRGGA------GGDTKGGAAGPGPGR 93
+P PQ + G A G TK PGP +
Sbjct: 486 PAKPPPQ---QPGSAKPPSQQPGSTKPPPQQPGPAK 518
Score = 37.7 bits (86), Expect = 0.031
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 5 PSPTQASSRGGGPG-PPAP-TRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS-- 60
P T+ ++ GP PPA T + SS G A P + P PA PP
Sbjct: 356 PGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQV 415
Query: 61 ---RPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDA 99
+P QQP Q K A G TK PGPG++ A
Sbjct: 416 GTPKPLAQQPGLQSPAK---APGPTKTPVQQPGPGKIPAQQA 454
Score = 34.3 bits (77), Expect = 0.34
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 33 RGGALSALGPSPARPLTTSPAPAPPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPG 90
RG ++ PSP++P P P PP +P ++ P + G TK A PG
Sbjct: 290 RGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPG 347
Score = 34.3 bits (77), Expect = 0.34
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPAR 64
P P + + GP P P + S++ + P P +P P+P P ++P
Sbjct: 474 PGPAKPPPQQPGPAKPPPQQP--GSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPS 531
Query: 65 QQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYP 102
QQP G K A P P + + P
Sbjct: 532 QQP------------GSAKPSAQQPSPAKPSAQQSTKP 557
Score = 33.9 bits (76), Expect = 0.45
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSP-----APAPPP- 58
P Q PGP P S ++ + P P TT P PA PP
Sbjct: 314 PPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPA 373
Query: 59 ----RSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGR 93
+P+ +QP P+ + G G K A PGP +
Sbjct: 374 QQTGSEKPSSEQPGPKALAQPPGVG---KTPAQQPGPAK 409
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSS--SRARGGAL-SALGPSPARPL----------TTS 51
P T+ + GP P+P + S+ S+ G A SA PSPA+P T S
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGS 563
Query: 52 PAPAPPPRSRPARQQPDPQ 70
P PP P+ +QP Q
Sbjct: 564 GKPLQPPTVSPSAKQPPSQ 582
Score = 30.4 bits (67), Expect = 5.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 1 MGAAPSPTQASSRGGGP-----GPPAPTRAVSSSSRARGGALSALGPSPARPLT---TSP 52
M AP+P+Q + G P PPAP +++ + A L P + T T
Sbjct: 964 MKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTET 1023
Query: 53 APAPPPRSRPARQQPDPQ 70
PPP +PQ
Sbjct: 1024 EKKPPPIKDSKSLTAEPQ 1041
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.8 bits (94), Expect = 0.004
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
AP PT+ + GPG + +A G SA P +P + P PA PP +P
Sbjct: 433 APGPTKTPVQQPGPGK-------IPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPG 485
Query: 64 RQQPDPQCWEKRGGA------GGDTKGGAAGPGPGR 93
+P PQ + G A G TK PGP +
Sbjct: 486 PAKPPPQ---QPGSAKPPSQQPGSTKPPPQQPGPAK 518
Score = 37.7 bits (86), Expect = 0.031
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 5 PSPTQASSRGGGPG-PPAP-TRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRS-- 60
P T+ ++ GP PPA T + SS G A P + P PA PP
Sbjct: 356 PGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQV 415
Query: 61 ---RPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDA 99
+P QQP Q K A G TK PGPG++ A
Sbjct: 416 GTPKPLAQQPGLQSPAK---APGPTKTPVQQPGPGKIPAQQA 454
Score = 34.3 bits (77), Expect = 0.34
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 33 RGGALSALGPSPARPLTTSPAPAPPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPG 90
RG ++ PSP++P P P PP +P ++ P + G TK A PG
Sbjct: 290 RGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPG 347
Score = 34.3 bits (77), Expect = 0.34
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPAR 64
P P + + GP P P + S++ + P P +P P+P P ++P
Sbjct: 474 PGPAKPPPQQPGPAKPPPQQP--GSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPS 531
Query: 65 QQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYP 102
QQP G K A P P + + P
Sbjct: 532 QQP------------GSAKPSAQQPSPAKPSAQQSTKP 557
Score = 33.9 bits (76), Expect = 0.45
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSP-----APAPPP- 58
P Q PGP P S ++ + P P TT P PA PP
Sbjct: 314 PPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPA 373
Query: 59 ----RSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPGR 93
+P+ +QP P+ + G G K A PGP +
Sbjct: 374 QQTGSEKPSSEQPGPKALAQPPGVG---KTPAQQPGPAK 409
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 5 PSPTQASSRGGGPGPPAPTRAVSSS--SRARGGAL-SALGPSPARPL----------TTS 51
P T+ + GP P+P + S+ S+ G A SA PSPA+P T S
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGS 563
Query: 52 PAPAPPPRSRPARQQPDPQ 70
P PP P+ +QP Q
Sbjct: 564 GKPLQPPTVSPSAKQPPSQ 582
Score = 30.4 bits (67), Expect = 5.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 1 MGAAPSPTQASSRGGGP-----GPPAPTRAVSSSSRARGGALSALGPSPARPLT---TSP 52
M AP+P+Q + G P PPAP +++ + A L P + T T
Sbjct: 964 MKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLEPKAEQAPTVKRTET 1023
Query: 53 APAPPPRSRPARQQPDPQ 70
PPP +PQ
Sbjct: 1024 EKKPPPIKDSKSLTAEPQ 1041
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.8 bits (94), Expect = 0.004
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 19/106 (17%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSP---------- 52
AAP+ ++ PP+P A R L+A P+PA P +P
Sbjct: 143 AAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPP 202
Query: 53 ------APAPPPRSRPA---RQQPDPQCWEKRGGAGGDTKGGAAGP 89
P PPP PA +QQP P + G GGAA P
Sbjct: 203 AVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248
Score = 37.0 bits (84), Expect = 0.053
Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 3 AAPSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSAL---GPSPARP----------LT 49
AAP PT A P PPAP A + + R A +A P PA+P
Sbjct: 125 AAPPPTPAP-----PPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAA 179
Query: 50 TSPAPAPPPRSRP---ARQQPDP 69
PAPA PP P R+ P P
Sbjct: 180 PPPAPAAPPAVAPPAGPRRAPPP 202
Score = 35.0 bits (79), Expect = 0.20
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 16 GPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSP----APAPPPRSRPARQQPDPQC 71
G PPAP RA + A A +A P+PA P +P APA PR+ A P
Sbjct: 105 GATPPAPPRAPRGAPAA--AAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSP 162
Query: 72 WEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPP 107
+ G A P P A PA PP
Sbjct: 163 GPAQPGPRAQRAAPLAAPPPA-----PAAPPAVAPP 193
Score = 33.1 bits (74), Expect = 0.77
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 7 PTQASSRGGGPGPPAPTRAVSSSS---RARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
P Q G GP P + TR V S + + G A A GP SP+P P P +PA
Sbjct: 385 PHQGQDEGRGPAPGSGTRQVFSMAAMNKEGGTASVATGPD-------SPSPVPLPPGKPA 437
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 4 APSPTQASSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPA 63
AP+ A++ P PP P V++++ AR P A T+P P + P
Sbjct: 118 APAAAAAAAPPPTPAPPPPPAPVAAAAPARA-------PRAAAAAATAPPSPGPAQPGPR 170
Query: 64 RQQPDPQCWEKRGGAGGDTKGGAAGPGPGRLRGMDAEYPAFEPP 107
Q+ P A AGP + A P PP
Sbjct: 171 AQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPP 214
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 40.4 bits (93), Expect = 0.005
Identities = 34/93 (36%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 15 GGPGPPAPTRAVSSSSRARGGALSALGPS-PAR--PLTTSPAPAPPP--RSRPAR----- 64
GGPG P R + RGG GP P R P+ P P P P R R R
Sbjct: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP 715
Query: 65 QQPDPQCWEKRGG-AGGDTKGGAAGPGPGRLRG 96
P P RGG +GG G GPG G + G
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG 748
Score = 30.0 bits (66), Expect = 6.5
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 12 SRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPL-TTSPAPAPPPRSRPARQQPDPQ 70
+ G PG P + + GG + P P+ P PPPR DP
Sbjct: 626 ANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRG------GDP- 678
Query: 71 CWEKRGG--AGGDTKGGAAGPGPG 92
W+ G GG +GG GPGPG
Sbjct: 679 FWDGPGDPMRGGPMRGG-PGPGPG 701
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 40.4 bits (93), Expect = 0.005
Identities = 24/57 (42%), Positives = 27/57 (47%)
Query: 11 SSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQP 67
S RGGG PAP A S R G A A +P SP+P+P R R AR P
Sbjct: 76 SVRGGGVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSP 132
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 40.4 bits (93), Expect = 0.005
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 19 PPAPTRAVSSSSRARGGALSAL-GPSPARP-LTTSPAPAPPPRSRPARQQPDPQCWEKRG 76
PP P+ A+S+ S R A +AL G P P+ P PR RP+R+ P P
Sbjct: 65 PPRPSPALSARSSRRALARTALPGRGRGAPGCAALPSRLPSPRPRPSRRAPPPV------ 118
Query: 77 GAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPL 108
+ +G GP GR RG PA PPL
Sbjct: 119 -SRRTARGWEPGPTLGRPRG-----PARRPPL 144
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 40.4 bits (93), Expect = 0.005
Identities = 24/57 (42%), Positives = 27/57 (47%)
Query: 11 SSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQP 67
S RGGG PAP A S R G A A +P SP+P+P R R AR P
Sbjct: 76 SVRGGGVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSP 132
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 2 GAAPSPTQASSR-----GGGPGP-----------PAPTRAVSSSSRARGGALSALGPSPA 45
GA P P SSR GG P P+ R SS S AR A SA
Sbjct: 195 GARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSA------ 248
Query: 46 RPLTTSPAPAPPPRSRPARQQPDPQCWEKRGGAGGDTKGGAAGPGPG 92
P T+P+ P S ++++ P C + GGA G GA PG G
Sbjct: 249 -PRPTAPSSVAQPSSARSQRRRAP-CPHRAGGADGVGSHGARAPGEG 293
>gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo
sapiens]
Length = 150
Score = 40.4 bits (93), Expect = 0.005
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 19 PPAPTRAVSSSSRARGGALSAL-GPSPARP-LTTSPAPAPPPRSRPARQQPDPQCWEKRG 76
PP P+ A+S+ S R A +AL G P P+ P PR RP+R+ P P
Sbjct: 65 PPRPSPALSARSSRRALARTALPGRGRGAPGCAALPSRLPSPRPRPSRRAPPPV------ 118
Query: 77 GAGGDTKGGAAGPGPGRLRGMDAEYPAFEPPL 108
+ +G GP GR RG PA PPL
Sbjct: 119 -SRRTARGWEPGPTLGRPRG-----PARRPPL 144
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 40.4 bits (93), Expect = 0.005
Identities = 24/57 (42%), Positives = 27/57 (47%)
Query: 11 SSRGGGPGPPAPTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQP 67
S RGGG PAP A S R G A A +P SP+P+P R R AR P
Sbjct: 76 SVRGGGVTAPAPPDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSP 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,830,378
Number of Sequences: 37866
Number of extensions: 1442322
Number of successful extensions: 20630
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 913
Number of HSP's that attempted gapping in prelim test: 15058
Number of HSP's gapped (non-prelim): 5073
length of query: 612
length of database: 18,247,518
effective HSP length: 108
effective length of query: 504
effective length of database: 14,157,990
effective search space: 7135626960
effective search space used: 7135626960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.