Guide to the Human Genome
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Name: LOC388079 Sequence: fasta or formatted (317aa) NCBI GI: 169218206
Description:

PREDICTED: similar to hCG2042704

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         25           2
 C cysteine            2.8          9           1
 D aspartate           5.7         18           4
 E glutamate           5.4         17           2
 F phenylalanine       3.2         10           2
 G glycine            11.7         37           4
 H histidine           3.2         10           1
 I isoleucine          0.6          2           1
 K lysine              1.9          6           1
 L leucine            11.4         36           2
 M methionine          0.9          3           1
 N asparagine          2.8          9           2
 P proline            10.4         33           4
 Q glutamine           3.5         11           1
 R arginine           11.4         36           2
 S serine              7.9         25           2
 T threonine           2.8          9           1
 V valine              4.1         13           2
 W tryptophan          1.6          5           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042704 
LOC646396             0.879   PREDICTED: similar to hCG2042704 
LOC646396             0.876   PREDICTED: similar to hCG2042704 
LOC100133447          0.314   PREDICTED: similar to hCG2042704, partial 
ZCCHC2                0.202   zinc finger, CCHC domain containing 2 
ZCCHC14               0.062   zinc finger, CCHC domain containing 14 
LOC100130360          0.034   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
APBB1IP               0.030   amyloid beta (A4) precursor protein-binding, family ...
LOC100131455          0.028   PREDICTED: hypothetical protein 
LOC100131455          0.028   PREDICTED: hypothetical protein 
LOC100131455          0.028   PREDICTED: hypothetical protein 
BBC3                  0.028   BCL2 binding component 3 isoform 1 
ESPN                  0.026   espin 
TMEM181               0.026   G protein-coupled receptor 178 
KIAA1429              0.026   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.026   hypothetical protein LOC25962 isoform 2 
MYCN                  0.026   v-myc myelocytomatosis viral related oncogene, neuro...
ZFPM1                 0.026   zinc finger protein, multitype 1 
TNKS1BP1              0.026   tankyrase 1-binding protein 1 
EVL                   0.025   Enah/Vasp-like 
USP51                 0.025   ubiquitin specific protease 51 
C6orf174              0.023   hypothetical protein LOC387104 
LOC284988             0.023   PREDICTED: hypothetical protein 
LOC645529             0.023   PREDICTED: similar to Putative acrosin-like proteas...
LOC100293337          0.023   PREDICTED: hypothetical protein 
LOC100290919          0.023   PREDICTED: hypothetical protein XP_002347810 
LOC100288369          0.023   PREDICTED: hypothetical protein XP_002343563 
ZNF469                0.022   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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