Guide to the Human Genome
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Name: LOC729355 Sequence: fasta or formatted (124aa) NCBI GI: 153791741
Description:

hypothetical protein LOC729355

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         15           2
 C cysteine            6.5          8           2
 D aspartate           2.4          3           1
 E glutamate           4.8          6           2
 F phenylalanine       3.2          4           1
 G glycine             8.9         11           1
 H histidine           1.6          2           1
 I isoleucine          2.4          3           1
 K lysine              0.8          1           1
 L leucine             6.5          8           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            13.7         17           1
 Q glutamine           1.6          2           1
 R arginine            8.1         10           1
 S serine             13.7         17           2
 T threonine           6.5          8           1
 V valine              3.2          4           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC729355 
TP53TG3               1.000   TP53 target 3 
LOC653550             0.975   PREDICTED: similar to TP53 target 3 isoform 3 [Homo...
LOC729264             0.971   PREDICTED: similar to TP53 target 3 isoform 1 [Homo...
LOC653550             0.621   PREDICTED: similar to TP53 target 3 isoform 2 [Homo...
NFATC1                0.042   nuclear factor of activated T-cells, cytosolic compo...
LOC100132635          0.037   PREDICTED: similar to mucin 5, partial 
KCNH4                 0.029   potassium voltage-gated channel, subfamily H, member ...
LOC100128346          0.025   PREDICTED: hypothetical protein 
LOC100128346          0.025   PREDICTED: hypothetical protein 
LOC100128346          0.025   PREDICTED: hypothetical protein 
NFIA                  0.021   nuclear factor I/A isoform 4 
NFIA                  0.021   nuclear factor I/A isoform 3 
NFIA                  0.021   nuclear factor I/A isoform 1 
LOC100128100          0.021   PREDICTED: hypothetical protein 
LOC100128100          0.021   PREDICTED: hypothetical protein 
EGR4                  0.021   early growth response 4 
PSD                   0.021   pleckstrin and Sec7 domain containing 
LOC100130054          0.021   PREDICTED: hypothetical protein 
LOC100133588          0.021   PREDICTED: similar to hCG1818014 
LOC100130054          0.021   PREDICTED: hypothetical protein 
TNS4                  0.021   tensin 4 
DCAF6                 0.017   IQ motif and WD repeats 1 isoform b 
DCAF6                 0.017   IQ motif and WD repeats 1 isoform a 
NHSL1                 0.017   NHS-like 1 
MUC19                 0.017   PREDICTED: mucin 19, oligomeric 
MUC19                 0.017   PREDICTED: mucin 19, oligomeric 
MUC19                 0.017   PREDICTED: mucin 19 
MUC12                 0.017   PREDICTED: mucin 12 
ADAMTS7               0.017   ADAM metallopeptidase with thrombospondin type 1 mot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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