Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130054 Sequence: fasta or formatted (62aa) NCBI GI: 169178932
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {62aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          5           1
 C cysteine            3.2          2           1
 D aspartate           3.2          2           1
 E glutamate          11.3          7           2
 F phenylalanine       1.6          1           1
 G glycine            16.1         10           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             6.5          4           2
 M methionine          1.6          1           1
 N asparagine          0.0          0           0
 P proline            19.4         12           2
 Q glutamine           1.6          1           1
 R arginine            8.1          5           2
 S serine             16.1         10           2
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          1.6          1           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130054          1.000   PREDICTED: hypothetical protein 
SNRPN                 0.107   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.107   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.107   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.107   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.107   small nuclear ribonucleoprotein polypeptide N 
SNRPB                 0.098   small nuclear ribonucleoprotein polypeptide B/B' iso...
MAPK7                 0.080   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.080   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.080   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.080   mitogen-activated protein kinase 7 isoform 2 
COL14A1               0.080   collagen, type XIV, alpha 1 
SNRPB                 0.071   small nuclear ribonucleoprotein polypeptide B/B' isof...
IRF7                  0.071   interferon regulatory factor 7 isoform d 
IRF7                  0.071   interferon regulatory factor 7 isoform a 
IRF7                  0.071   interferon regulatory factor 7 isoform b 
ZFPM1                 0.071   zinc finger protein, multitype 1 
STIM1                 0.071   stromal interaction molecule 1 precursor 
NCOR2                 0.062   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.062   nuclear receptor co-repressor 2 isoform 1 
ZCCHC2                0.062   zinc finger, CCHC domain containing 2 
PRB1                  0.062   proline-rich protein BstNI subfamily 1 isoform 3 pre...
MATN3                 0.062   matrilin 3 precursor 
COL1A1                0.062   alpha 1 type I collagen preproprotein 
NRG1                  0.054   neuregulin 1 isoform GGF2 
CASKIN2               0.054   cask-interacting protein 2 isoform b 
CASKIN2               0.054   cask-interacting protein 2 isoform a 
COL4A5                0.054   type IV collagen alpha 5 isoform 2 precursor 
KDM1                  0.054   amine oxidase (flavin containing) domain 2 isoform a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press