Guide to the Human Genome
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Name: LOC729264 Sequence: fasta or formatted (132aa) NCBI GI: 239745531
Description:

PREDICTED: similar to TP53 target 3 isoform 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         16           2
 C cysteine            6.8          9           2
 D aspartate           2.3          3           1
 E glutamate           4.5          6           2
 F phenylalanine       2.3          3           1
 G glycine             9.8         13           1
 H histidine           2.3          3           1
 I isoleucine          2.3          3           1
 K lysine              0.8          1           1
 L leucine             7.6         10           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            13.6         18           1
 Q glutamine           2.3          3           1
 R arginine            8.3         11           1
 S serine             12.1         16           1
 T threonine           6.1          8           1
 V valine              3.0          4           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TP53 target 3 isoform 1 [Homo... 
LOC653550             0.923   PREDICTED: similar to TP53 target 3 isoform 3 [Homo...
LOC729355             0.900   hypothetical protein LOC729355 
TP53TG3               0.900   TP53 target 3 
LOC653550             0.575   PREDICTED: similar to TP53 target 3 isoform 2 [Homo...
LOC100132635          0.062   PREDICTED: similar to mucin 5, partial 
NFATC1                0.039   nuclear factor of activated T-cells, cytosolic compo...
KCNH4                 0.027   potassium voltage-gated channel, subfamily H, member ...
LOC100128346          0.023   PREDICTED: hypothetical protein 
LOC100128346          0.023   PREDICTED: hypothetical protein 
LOC100128346          0.023   PREDICTED: hypothetical protein 
NFIA                  0.019   nuclear factor I/A isoform 4 
NFIA                  0.019   nuclear factor I/A isoform 3 
NFIA                  0.019   nuclear factor I/A isoform 1 
LOC100128100          0.019   PREDICTED: hypothetical protein 
LOC100128100          0.019   PREDICTED: hypothetical protein 
EGR4                  0.019   early growth response 4 
PSD                   0.019   pleckstrin and Sec7 domain containing 
LOC100130054          0.019   PREDICTED: hypothetical protein 
LOC100133588          0.019   PREDICTED: similar to hCG1818014 
LOC100130054          0.019   PREDICTED: hypothetical protein 
TNS4                  0.019   tensin 4 
DCAF6                 0.015   IQ motif and WD repeats 1 isoform b 
DCAF6                 0.015   IQ motif and WD repeats 1 isoform a 
NHSL1                 0.015   NHS-like 1 
MUC19                 0.015   PREDICTED: mucin 19, oligomeric 
MUC19                 0.015   PREDICTED: mucin 19, oligomeric 
MUC19                 0.015   PREDICTED: mucin 19 
MUC12                 0.015   PREDICTED: mucin 12 
CXorf67               0.015   hypothetical protein LOC340602 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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