Guide to the Human Genome
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Name: LOC100133588 Sequence: fasta or formatted (127aa) NCBI GI: 169172282
Description:

PREDICTED: similar to hCG1818014

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          6           2
 C cysteine            2.4          3           1
 D aspartate           3.9          5           1
 E glutamate           4.7          6           1
 F phenylalanine       2.4          3           1
 G glycine             9.4         12           1
 H histidine           4.7          6           1
 I isoleucine          2.4          3           1
 K lysine              1.6          2           1
 L leucine             9.4         12           2
 M methionine          2.4          3           1
 N asparagine          1.6          2           1
 P proline            13.4         17           2
 Q glutamine           4.7          6           1
 R arginine            6.3          8           1
 S serine              8.7         11           2
 T threonine          12.6         16           1
 V valine              3.1          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1818014 
LOC100289268          0.237   PREDICTED: hypothetical protein XP_002342358 
LOC100292957          0.212   PREDICTED: hypothetical protein 
LOC100290383          0.212   PREDICTED: hypothetical protein XP_002347044 
SCAF1                 0.065   SR-related CTD-associated factor 1 
PER3                  0.061   period 3 
ADAMTS14              0.057   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.057   ADAM metallopeptidase with thrombospondin type 1 mo...
MUC7                  0.045   mucin 7, secreted precursor 
MUC7                  0.045   mucin 7, secreted precursor 
MUC7                  0.045   mucin 7, secreted precursor 
BCL9                  0.045   B-cell CLL/lymphoma 9 
LRRC24                0.041   leucine rich repeat containing 24 
LOC100293485          0.041   PREDICTED: hypothetical protein 
MLL2                  0.037   myeloid/lymphoid or mixed-lineage leukemia 2 
DACT3                 0.037   thymus expressed gene 3-like 
PPP1R12C              0.037   protein phosphatase 1, regulatory subunit 12C 
CASKIN1               0.033   CASK interacting protein 1 
DUSP8                 0.033   dual specificity phosphatase 8 
RAPH1                 0.033   Ras association and pleckstrin homology domains 1 is...
DRD4                  0.033   dopamine receptor D4 
PRR12                 0.033   proline rich 12 
SMARCC1               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SUPT5H                0.029   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.029   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.029   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.029   suppressor of Ty 5 homolog isoform a 
C9orf86               0.029   Rab-like GTP-binding protein 1 isoform 2 
C9orf86               0.029   Rab-like GTP-binding protein 1 isoform 1 
WASL                  0.029   Wiskott-Aldrich syndrome gene-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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