Guide to the Human Genome
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Name: LOC100128346 Sequence: fasta or formatted (190aa) NCBI GI: 169161622
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {190aa} PREDICTED: hypothetical protein
alt mRNA {190aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         18           3
 C cysteine            2.1          4           1
 D aspartate           3.7          7           1
 E glutamate           3.2          6           1
 F phenylalanine       1.1          2           1
 G glycine            13.7         26           2
 H histidine           1.6          3           1
 I isoleucine          0.5          1           1
 K lysine              3.2          6           2
 L leucine            12.6         24           3
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            11.1         21           4
 Q glutamine           4.7          9           1
 R arginine            8.9         17           2
 S serine              8.9         17           1
 T threonine           5.3         10           1
 V valine              5.3         10           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128346          1.000   PREDICTED: hypothetical protein 
LOC100128346          1.000   PREDICTED: hypothetical protein 
COL5A1                0.033   alpha 1 type V collagen preproprotein 
CPSF6                 0.027   cleavage and polyadenylation specific factor 6, 68 ...
RBM20                 0.024   RNA binding motif protein 20 
LOC100292234          0.024   PREDICTED: hypothetical protein 
LOC100290708          0.024   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          0.024   PREDICTED: hypothetical protein XP_002342507 
LOC100292157          0.022   PREDICTED: hypothetical protein 
LOC100290926          0.022   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.022   PREDICTED: hypothetical protein XP_002343379 
TPR                   0.022   nuclear pore complex-associated protein TPR 
PCLO                  0.022   piccolo isoform 2 
PCLO                  0.022   piccolo isoform 1 
KLF2                  0.019   Kruppel-like factor 
SYN1                  0.019   synapsin I isoform Ia 
SYN1                  0.019   synapsin I isoform Ib 
LOC651986             0.019   PREDICTED: similar to forkhead box L2 
LOC100288524          0.019   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.019   PREDICTED: similar to forkhead box L2 
BIN1                  0.019   bridging integrator 1 isoform 2 
CHADL                 0.019   chondroadherin-like 
COL25A1               0.019   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.019   collagen, type XXV, alpha 1 isoform 2 
HCN3                  0.019   hyperpolarization activated cyclic nucleotide-gated ...
SCRT1                 0.019   scratch 
SH2B3                 0.016   SH2B adaptor protein 3 
ASCL5                 0.016   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.016   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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