Guide to the Human Genome
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Search of human proteins with 153218470

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153218470 BarH-like homeobox 1 [Homo sapiens]
         (254 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153218470 BarH-like homeobox 1 [Homo sapiens]                      511   e-145
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                        167   8e-42
gi|147901462 brain specific homeobox [Homo sapiens]                    95   7e-20
gi|89257348 homeo box HB9 [Homo sapiens]                               86   4e-17
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        85   5e-17
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        85   7e-17
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]            84   1e-16
gi|11386181 H2.0-like homeobox [Homo sapiens]                          82   3e-16
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  80   1e-15
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  80   1e-15
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             80   2e-15
gi|148613882 homeobox A4 [Homo sapiens]                                80   2e-15
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]                   80   2e-15
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                79   3e-15
gi|82659115 distal-less homeobox 6 [Homo sapiens]                      79   4e-15
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]            79   4e-15
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]            78   6e-15
gi|4885187 distal-less homeobox 5 [Homo sapiens]                       77   1e-14
gi|4758168 distal-less homeobox 2 [Homo sapiens]                       77   1e-14
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]              77   1e-14
gi|4885185 distal-less homeobox 3 [Homo sapiens]                       77   2e-14
gi|27886557 msh homeobox 2 [Homo sapiens]                              77   2e-14
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             76   2e-14
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  76   2e-14
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  76   2e-14
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  76   2e-14
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    75   6e-14
gi|94536800 empty spiracles homolog 1 [Homo sapiens]                   74   1e-13
gi|116174748 developing brain homeobox 2 [Homo sapiens]                74   2e-13
gi|13273315 homeobox B4 [Homo sapiens]                                 73   3e-13

>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
          Length = 254

 Score =  511 bits (1317), Expect = e-145
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG 60
           MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG
Sbjct: 1   MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG 60

Query: 61  VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLE 120
           VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLE
Sbjct: 61  VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLE 120

Query: 121 LQLRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG 180
           LQLRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG
Sbjct: 121 LQLRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG 180

Query: 181 LSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKP 240
           LSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKP
Sbjct: 181 LSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKP 240

Query: 241 AEVPGEPSDRSRED 254
           AEVPGEPSDRSRED
Sbjct: 241 AEVPGEPSDRSRED 254


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score =  167 bits (423), Expect = 8e-42
 Identities = 114/267 (42%), Positives = 147/267 (55%), Gaps = 47/267 (17%)

Query: 1   MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG 60
           +  PG+  AAR             RY++FMI+EIL++                 +L  + 
Sbjct: 9   LSSPGQLKAAR------------RRYKTFMIDEILSKE----------TCDYFEKLSLYS 46

Query: 61  VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSG--LSSALLAAGPGLPGAAGAPHLP 118
           V   L  RP   H         A   +PL  +      + S L+ A PG+  A       
Sbjct: 47  VCPSLVVRPKPLHSCTGSPSLRA---YPLLSVITRQPTVISHLVPATPGIAQALSCH--- 100

Query: 119 LELQLRGKLEAAGPG------------EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKY 166
              Q+   + A  PG            +P  + KK RRSRT+FTELQLMGLEK+F+KQKY
Sbjct: 101 ---QVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKY 157

Query: 167 LSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSE 226
           LSTPDR+DLA+SLGL+QLQVKTWYQNRRMKWKK+VL+ GG E+PTKPKGRPKKNSIPTSE
Sbjct: 158 LSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLK-GGQEAPTKPKGRPKKNSIPTSE 216

Query: 227 QLTEQERAKDAEKPAEVPGEPSDRSRE 253
           ++ E E   +++   +   EPS    E
Sbjct: 217 EI-EAEEKMNSQAQGQEQLEPSQGQEE 242


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 94.7 bits (234), Expect = 7e-20
 Identities = 82/247 (33%), Positives = 111/247 (44%), Gaps = 56/247 (22%)

Query: 25  RYRSFMIEEILTEPPGP-KGAAP---AAAAAAAGELLKFG-----VQALLAARPFHSHLA 75
           R  SF IE+IL   P P +  AP   A++ A+   LL +G        LLA    H    
Sbjct: 16  RPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHAHH---- 71

Query: 76  VLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEP 135
                          PL              G+P  A  PH P   +L GK         
Sbjct: 72  ---------------PLHKGDHHHPYFLTTSGMPVPALFPH-PQHAELPGK--------- 106

Query: 136 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 195
                + R++RTVF++ QL GLEKRFE Q+YLSTP+R++LA +L LS+ QVKTW+QNRRM
Sbjct: 107 ---HCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRM 163

Query: 196 KWKKIVLQG----GGLESPTKPKGRPKKNSIPTSEQ-----------LTEQERAKDAEKP 240
           K KK + +        + P  P+G P+ +   T+ +           LTE E   D    
Sbjct: 164 KHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDE 223

Query: 241 AEVPGEP 247
            E+   P
Sbjct: 224 GELGSGP 230


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 76/224 (33%), Positives = 103/224 (45%), Gaps = 41/224 (18%)

Query: 1   MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG 60
           + +PG  GA   G   G     PH +            PG   AA AAAAAAA   L  G
Sbjct: 91  LPKPGFLGAGGGGGGTGGGHGGPHHHAH----------PGAAAAAAAAAAAAAAGGLALG 140

Query: 61  VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGL----PGAAGA-- 114
           +       P  +        QAA++  P+     +  ++AL    P L    P   GA  
Sbjct: 141 LH------PGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHP 194

Query: 115 --PHLPLEL-----QLRGKLEAAGPG-------EPGTKAK-----KGRRSRTVFTELQLM 155
             P  P++L     QL   L A+  G       +  ++A+     K RR RT FT  QL+
Sbjct: 195 AHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLL 254

Query: 156 GLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            LE +F+  KYLS P R ++A SL L++ QVK W+QNRRMKWK+
Sbjct: 255 ELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 298


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 85.1 bits (209), Expect = 5e-17
 Identities = 39/65 (60%), Positives = 50/65 (76%)

Query: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
           P  +AKK R++RT F++ QL  LE+ FE+QKYLS  DR+DLA +L L+  QVKTWYQNRR
Sbjct: 225 PPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRR 284

Query: 195 MKWKK 199
            KWK+
Sbjct: 285 TKWKR 289


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 84.7 bits (208), Expect = 7e-17
 Identities = 39/65 (60%), Positives = 49/65 (75%)

Query: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
           P  + KK R++RT FT+ QL  LE+ FE+QKYLS  DR++LA SL L+  QVKTWYQNRR
Sbjct: 171 PPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 230

Query: 195 MKWKK 199
            KWK+
Sbjct: 231 TKWKR 235


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 87  FPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLEL----QLRGKLEAAGPGEPGTKAKKG 142
           +P      S  SS  +++    PG+A      LE       +  +   G      K KK 
Sbjct: 69  YPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKI 128

Query: 143 RRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVL 202
           R+ RT+++ LQL  L +RF++ +YL+ P+R +LA SLGL+Q QVK W+QN+R K+KK++ 
Sbjct: 129 RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMK 188

Query: 203 QGG-GLESPTKPKGR 216
           QGG  LE      GR
Sbjct: 189 QGGAALEGSALANGR 203


>gi|11386181 H2.0-like homeobox [Homo sapiens]
          Length = 488

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
           P T  +K   SR VF+ LQ  GLEKRFE QKY++ PDR  LA  LGL+  QVK W+QNRR
Sbjct: 269 PQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRR 328

Query: 195 MKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVPGEPSDRSRED 254
           MKW+    +    +   K  G       P ++   EQ+    +    E   E SD    D
Sbjct: 329 MKWRH-SKEAQAQKDKDKEAGEKPSGGAPAAD--GEQDERSPSRSEGEAESESSDSESLD 385


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 106 PGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----KAKKGRRSRTVFTELQLMGLEKRF 161
           PG PG A AP        +G   AA P    T    K+ K RR+RT FT  QL+ LE +F
Sbjct: 623 PGPPGGAAAPG-GAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKF 681

Query: 162 EKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNS 221
           +  +YLS  +R++LA SL L++ QVK W+QNRR KWKK    G    +PT   G P   +
Sbjct: 682 KATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK-QNPGADTSAPTGGGGGPGPGA 740

Query: 222 IP 223
            P
Sbjct: 741 GP 742



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 36  TEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCS 95
           T P  P+GA  AA  AA      F V  +L    F+S        +  V   P+AP  C+
Sbjct: 426 TVPAAPEGAG-AARPAAPLRPTSFSVLDILDPNKFNSR------RRRCVLLGPVAPAACA 478

Query: 96  GLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGTK 138
             +SA  A  P    A+G P    EL+ R    A G G  G +
Sbjct: 479 PCASAPCAPAPA---ASGRPPRAEELERRALAGAGGVGAAGAE 518


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 106 PGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----KAKKGRRSRTVFTELQLMGLEKRF 161
           PG PG A AP        +G   AA P    T    K+ K RR+RT FT  QL+ LE +F
Sbjct: 58  PGPPGGAAAPG-GAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKF 116

Query: 162 EKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNS 221
           +  +YLS  +R++LA SL L++ QVK W+QNRR KWKK    G    +PT   G P   +
Sbjct: 117 KATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK-QNPGADTSAPTGGGGGPGPGA 175

Query: 222 IP 223
            P
Sbjct: 176 GP 177


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 51/121 (42%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 102 LAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGTKAK--KGRRSRTVFTELQLMGLEK 159
           L +  G PGA   P   L+  L    E   P   G  A   K RR RT FT  QL+ LEK
Sbjct: 219 LDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEK 278

Query: 160 RFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKK 219
            F  +KYLS  +R  +A +L LS++QVK W+QNRR KWK+I  + G + S +   G P +
Sbjct: 279 EFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI--KAGNVSSRS---GEPVR 333

Query: 220 N 220
           N
Sbjct: 334 N 334


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 70/214 (32%), Positives = 90/214 (42%), Gaps = 37/214 (17%)

Query: 2   QRPGEPGAARFGPPEGCADHR-PHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG 60
           + P  P AA + P  G AD   P+ YR          PP P+     A   A G      
Sbjct: 80  REPAYPAAALY-PAHGAADTAYPYGYRGGASPG---RPPQPEQPPAQAKGPAHG------ 129

Query: 61  VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPL- 119
              L A+      L      +A     P AP  C         A PG+P    AP  PL 
Sbjct: 130 ---LHASHVLQPQLPPPLQPRAVP---PAAPRRCEAAP-----ATPGVPAGGSAPACPLL 178

Query: 120 -----ELQLRGKLEAAGPG---------EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQK 165
                 L L+GK     P           P     + +RSRT +T  Q++ LEK F   +
Sbjct: 179 LADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNR 238

Query: 166 YLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
           YL+   RI++A +L LS+ QVK W+QNRRMKWKK
Sbjct: 239 YLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272


>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
          Length = 330

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 31/202 (15%)

Query: 4   PGEP----GAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKF 59
           PG P    GA   GP  G          S+ +   L   PGP G     ++  AG L   
Sbjct: 82  PGGPAGGGGACSMGPLTG----------SYNVNMALAGGPGPGGGG--GSSGGAGALSAA 129

Query: 60  GVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPL 119
           GV  + A RP    +A  +     +   P  P            A PG+    G     +
Sbjct: 130 GVIRVPAHRPLAGAVAHPQPLATGLPTVPSVP------------AMPGVNNLTGLTFPWM 177

Query: 120 ELQLRGKLE--AAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAE 177
           E   R   +     P +  T  KK ++ RT FT LQ+  LEKRF +QKYL++ +R  LA+
Sbjct: 178 ESNRRYTKDRFTGHPYQNRTPPKK-KKPRTSFTRLQICELEKRFHRQKYLASAERAALAK 236

Query: 178 SLGLSQLQVKTWYQNRRMKWKK 199
           +L ++  QVKTW+QNRR KW++
Sbjct: 237 ALKMTDAQVKTWFQNRRTKWRR 258


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 67/196 (34%), Positives = 90/196 (45%), Gaps = 11/196 (5%)

Query: 32  EEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAP 91
           +E+  +    +  AP   AA   E  + G   L A        A   A   A      AP
Sbjct: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210

Query: 92  LGCSGLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----KAKKGRRSRT 147
                  ++ +A GP  PG A AP        +G   AA P    T    K+ K RR+RT
Sbjct: 211 ---GPRENSPVAQGP--PGGAAAPG-GAGTTPQGTATAAKPKRKRTGSDSKSGKPRRART 264

Query: 148 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGL 207
            FT  QL+ LE +F+  +YLS  +R++LA SL L++ QVK W+QNRR KWKK    G   
Sbjct: 265 AFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK-QNPGADT 323

Query: 208 ESPTKPKGRPKKNSIP 223
            +PT   G P   + P
Sbjct: 324 SAPTGGGGGPGPGAGP 339



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 36  TEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCS 95
           T P  P+GA  AA  AA      F V  +L    F+S        +  V   P+AP  C+
Sbjct: 23  TVPAAPEGAG-AARPAAPLRPTSFSVLDILDPNKFNSR------RRRCVLLGPVAPAACA 75

Query: 96  GLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGTK 138
             +SA  A  P    A+G P    EL+ R    A G G  G +
Sbjct: 76  PCASAPCAPAPA---ASGRPPRAEELERRALAGAGGVGAAGAE 115


>gi|82659115 distal-less homeobox 6 [Homo sapiens]
          Length = 265

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
           K KK R+ RT+++ LQL  L  RF++ +YL+ P+R +LA SLGL+Q QVK W+QN+R K+
Sbjct: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194

Query: 198 KKIVLQGGGLESPTKPKG----RPKKNSIPTSEQLTEQERAKDAEKPAEVPG 245
           KK++ QG         +G     P+  ++P    ++   +       + +PG
Sbjct: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPG 246


>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
          Length = 240

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 69/201 (34%), Positives = 94/201 (46%), Gaps = 26/201 (12%)

Query: 45  APAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAA 104
           AP  + AAA  L   G+    AA P  S+        +  +  P  P G S LS    AA
Sbjct: 22  APVPSVAAAYPL---GLSPTTAASPNLSYSRPYGHLLSYPYTEPANP-GDSYLSCQQPAA 77

Query: 105 GPGLPGAAGAPHLPLELQLRGKLEAAGPG----EPGTKAKKGRRSRTVFTELQLMGLEKR 160
               P    A H P EL+   +     P      P   AKK R+ RT+++ LQL  L +R
Sbjct: 78  -LSQPLCGPAEH-PQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQR 135

Query: 161 FEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLE-----------S 209
           F+  +YL+ P+R  LA  LGL+Q QVK W+QN+R K+KK++ Q  G +           S
Sbjct: 136 FQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVS 195

Query: 210 PTKPK-----GRPKKNSIPTS 225
           P  P        PK  ++PTS
Sbjct: 196 PCSPPLPSLWDLPKAGTLPTS 216


>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
          Length = 168

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 16/107 (14%)

Query: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
           P   AKK R+ RT+++ LQL  L +RF+  +YL+ P+R  LA  LGL+Q QVK W+QN+R
Sbjct: 38  PQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKR 97

Query: 195 MKWKKIVLQGGGLE-----------SPTKPK-----GRPKKNSIPTS 225
            K+KK++ Q  G +           SP  P        PK  ++PTS
Sbjct: 98  SKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTS 144


>gi|4885187 distal-less homeobox 5 [Homo sapiens]
          Length = 289

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
           K KK R+ RT+++  QL  L++RF+K +YL+ P+R +LA SLGL+Q QVK W+QN+R K 
Sbjct: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 192

Query: 198 KKIVLQG 204
           KKI+  G
Sbjct: 193 KKIMKNG 199


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
           K KK R+ RT+++  QL  L++RF+K +YL+ P+R +LA SLGL+Q QVK W+QNRR K+
Sbjct: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207

Query: 198 KKIVLQG 204
           KK+   G
Sbjct: 208 KKMWKSG 214


>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
          Length = 348

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 129 AAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 188
           ++G     T   K RR RT FT  QL+ LEK F  +KYLS  +R  +A +L LS++QVK 
Sbjct: 234 SSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 293

Query: 189 WYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIP 223
           W+QNRR KWK++  + G   S T    R  K  +P
Sbjct: 294 WFQNRRAKWKRV--KAGNANSKTGEPSRNPKIVVP 326


>gi|4885185 distal-less homeobox 3 [Homo sapiens]
          Length = 287

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
           K KK R+ RT+++  QL  L++RF+K +YL+ P+R +LA  LGL+Q QVK W+QNRR K+
Sbjct: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184

Query: 198 KKIVLQG 204
           KK+   G
Sbjct: 185 KKLYKNG 191


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 28/194 (14%)

Query: 13  GPPEGCADHRPHRYRS--FMIEEILTEPPGPKGAAPAAA-AAAAGELLKFGVQALLAARP 69
           G  EG A+ R  +  S  F +E ++++   PK A+P  A +A+AG  L+  + +   AR 
Sbjct: 29  GGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGARE 88

Query: 70  FHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAP--HL-PLELQLRGK 126
            HS   ++K  + A  K   +  G + +           PG    P  H+ P    LR  
Sbjct: 89  AHSPGPLVKPFETASVKSENSEDGAAWMQE---------PGRYSPPPRHMSPTTCTLR-- 137

Query: 127 LEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 186
                      K K  R+ RT FT  QL+ LE++F +++YLS  +R + + SL L++ QV
Sbjct: 138 -----------KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQV 186

Query: 187 KTWYQNRRMKWKKI 200
           K W+QNRR K K++
Sbjct: 187 KIWFQNRRAKAKRL 200


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 102 LAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----------KAKKGRRSRTVFTE 151
           LA  P  P  A A   P E    G + +  PG PG+             K RR+RT FT 
Sbjct: 114 LARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPGSPRPRRRRLEPNCAKPRRARTAFTY 172

Query: 152 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            QL+ LE +F   +YLS  +R++LA SL L++ QVK W+QNRR KWKK
Sbjct: 173 EQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 102 LAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----------KAKKGRRSRTVFTE 151
           LA  P  P  A A   P E    G + +  PG PG+             K RR+RT FT 
Sbjct: 136 LARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPGSPRPRRRRLEPNCAKPRRARTAFTY 194

Query: 152 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            QL+ LE +F   +YLS  +R++LA SL L++ QVK W+QNRR KWKK
Sbjct: 195 EQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 242


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 102 LAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----------KAKKGRRSRTVFTE 151
           LA  P  P  A A   P E    G + +  PG PG+             K RR+RT FT 
Sbjct: 136 LARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPGSPRPRRRRLEPNCAKPRRARTAFTY 194

Query: 152 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            QL+ LE +F   +YLS  +R++LA SL L++ QVK W+QNRR KWKK
Sbjct: 195 EQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 242


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 102 LAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGT----------KAKKGRRSRTVFTE 151
           LA  P  P  A A   P E    G + +  PG PG+             K RR+RT FT 
Sbjct: 136 LARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPGSPRPRRRRLEPNCAKPRRARTAFTY 194

Query: 152 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            QL+ LE +F   +YLS  +R++LA SL L++ QVK W+QNRR KWKK
Sbjct: 195 EQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 242


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 58/164 (35%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 44  AAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLA 103
           A+ AAAAAAA          LLA  P  S L+         F    A +   G     LA
Sbjct: 136 ASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLA 195

Query: 104 AGPGL-----PGAAGAPHLPLELQLRGKLEAAGPGEPGT---KAKKGRRSRTVFTELQLM 155
             PG      PG   +P        R    A  P +      K  K + +R  F+  Q+ 
Sbjct: 196 ELPGRTPIFWPGVMQSP------PWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIF 249

Query: 156 GLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 199
            LEK FE+ KYL+ P+R  LA SLG+++ QVK W+QNRR KW+K
Sbjct: 250 ALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293


>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
          Length = 290

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 65/186 (34%), Positives = 85/186 (45%), Gaps = 36/186 (19%)

Query: 46  PAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAG 105
           PAAAAA AG  L  G + +      H  L V  A Q                    L A 
Sbjct: 100 PAAAAAGAGRSLYGGPELVFPEAMNHPALTVHPAHQ--------------------LGAS 139

Query: 106 PGLPGAA--GAPH------LPLELQLR---GKLEAAGPGEPGTK-----AKKGRRSRTVF 149
           P  P  +  GA H       P  L+ R    + +A+   + G       A+K +R RT F
Sbjct: 140 PLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPKRIRTAF 199

Query: 150 TELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLES 209
           +  QL+ LE+ FEK  Y+   +R  LA SL LS+ QVK W+QNRR K+K+  L+  G ES
Sbjct: 200 SPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPES 259

Query: 210 PTKPKG 215
             K KG
Sbjct: 260 EQKKKG 265


>gi|116174748 developing brain homeobox 2 [Homo sapiens]
          Length = 339

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 46/65 (70%)

Query: 134 EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNR 193
           +  +KA++G   R VF+E Q   LEK F+KQKY+S  DR  LA +LGL + QVK W+QNR
Sbjct: 178 DSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNR 237

Query: 194 RMKWK 198
           RMKW+
Sbjct: 238 RMKWR 242


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194
           P     + +RSRT +T  Q++ LEK F   +YL+   R+++A +L LS+ Q+K W+QNRR
Sbjct: 155 PNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRR 214

Query: 195 MKWKK-------IVLQGGGLESPTKPKGRP 217
           MKWKK        +  GG   S   P GRP
Sbjct: 215 MKWKKDHKLPNTKIRSGGAAGSAGGPPGRP 244


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,089,140
Number of Sequences: 37866
Number of extensions: 654356
Number of successful extensions: 4516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 3062
Number of HSP's gapped (non-prelim): 1505
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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