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Search of human proteins with 110227598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110227598 phospholipase B domain containing 1 [Homo sapiens]
(553 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110227598 phospholipase B domain containing 1 [Homo sapiens] 1147 0.0
gi|229093316 phospholipase B domain containing 2 isoform 1 precu... 257 2e-68
gi|229091322 phospholipase B domain containing 2 isoform 2 precu... 223 5e-58
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 36 0.081
gi|40255245 G protein-coupled receptor 51 [Homo sapiens] 35 0.14
gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo sa... 35 0.23
gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo sa... 35 0.23
gi|63025220 ring finger protein 215 [Homo sapiens] 32 1.2
gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Ho... 32 1.5
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 32 1.5
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 32 1.5
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 32 1.5
gi|148613882 homeobox A4 [Homo sapiens] 31 2.6
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s... 31 3.4
gi|20336188 paired basic amino acid cleaving system 4 isoform e ... 30 4.4
gi|20336186 paired basic amino acid cleaving system 4 isoform c ... 30 4.4
gi|27894285 paired basic amino acid cleaving system 4 isoform f ... 30 4.4
gi|20336190 paired basic amino acid cleaving system 4 isoform d ... 30 4.4
gi|20336184 paired basic amino acid cleaving system 4 isoform h ... 30 4.4
gi|20336182 paired basic amino acid cleaving system 4 isoform g ... 30 4.4
gi|4505577 paired basic amino acid cleaving system 4 isoform a p... 30 4.4
gi|20336180 paired basic amino acid cleaving system 4 isoform b ... 30 4.4
gi|153792351 ADAM metallopeptidase with thrombospondin type 1 mo... 30 4.4
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 30 5.8
gi|39777610 semaphorin 4B precursor [Homo sapiens] 30 5.8
gi|39777608 semaphorin 4B precursor [Homo sapiens] 30 5.8
gi|31083156 interleukin 20 receptor, alpha [Homo sapiens] 30 5.8
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su... 30 7.5
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su... 30 7.5
gi|55770876 notch4 preproprotein [Homo sapiens] 29 9.8
>gi|110227598 phospholipase B domain containing 1 [Homo sapiens]
Length = 553
Score = 1147 bits (2967), Expect = 0.0
Identities = 553/553 (100%), Positives = 553/553 (100%)
Query: 1 MTRGGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVM 60
MTRGGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVM
Sbjct: 1 MTRGGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVM 60
Query: 61 DKNGDAYGFYNNSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTN 120
DKNGDAYGFYNNSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTN
Sbjct: 61 DKNGDAYGFYNNSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTN 120
Query: 121 LYPQLITKPSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVGAKKRA 180
LYPQLITKPSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVGAKKRA
Sbjct: 121 LYPQLITKPSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVGAKKRA 180
Query: 181 ILEGTKPMTLFQIQFLNSVGDLLDLIPSLSPTKNGSLKVFKRWDMGHCSALIKVLPGFEN 240
ILEGTKPMTLFQIQFLNSVGDLLDLIPSLSPTKNGSLKVFKRWDMGHCSALIKVLPGFEN
Sbjct: 181 ILEGTKPMTLFQIQFLNSVGDLLDLIPSLSPTKNGSLKVFKRWDMGHCSALIKVLPGFEN 240
Query: 241 ILFAHSSWYTYAAMLRIYKHWDFNVIDKDTSSSRLSFSSYPGFLESLDDFYILSSGLILL 300
ILFAHSSWYTYAAMLRIYKHWDFNVIDKDTSSSRLSFSSYPGFLESLDDFYILSSGLILL
Sbjct: 241 ILFAHSSWYTYAAMLRIYKHWDFNVIDKDTSSSRLSFSSYPGFLESLDDFYILSSGLILL 300
Query: 301 QTTNSVFNKTLLKQVIPETLLSWQRVRVANMMADSGKRWADIFSKYNSGTYNNQYMVLDL 360
QTTNSVFNKTLLKQVIPETLLSWQRVRVANMMADSGKRWADIFSKYNSGTYNNQYMVLDL
Sbjct: 301 QTTNSVFNKTLLKQVIPETLLSWQRVRVANMMADSGKRWADIFSKYNSGTYNNQYMVLDL 360
Query: 361 KKVKLNHSLDKGTLYIVEQIPTYVEYSEQTDVLRKGYWPSYNVPFHEKIYNWSGYPLLVQ 420
KKVKLNHSLDKGTLYIVEQIPTYVEYSEQTDVLRKGYWPSYNVPFHEKIYNWSGYPLLVQ
Sbjct: 361 KKVKLNHSLDKGTLYIVEQIPTYVEYSEQTDVLRKGYWPSYNVPFHEKIYNWSGYPLLVQ 420
Query: 421 KLGLDYSYDLAPRAKIFRRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPCNTICCREDLN 480
KLGLDYSYDLAPRAKIFRRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPCNTICCREDLN
Sbjct: 421 KLGLDYSYDLAPRAKIFRRDQGKVTDTASMKYIMRYNNYKKDPYSRGDPCNTICCREDLN 480
Query: 481 SPNPSPGGCYDTKVADIYLASQYTSYAISGPTVQGGLPVFRWDRFNKTLHQGMPEVYNFD 540
SPNPSPGGCYDTKVADIYLASQYTSYAISGPTVQGGLPVFRWDRFNKTLHQGMPEVYNFD
Sbjct: 481 SPNPSPGGCYDTKVADIYLASQYTSYAISGPTVQGGLPVFRWDRFNKTLHQGMPEVYNFD 540
Query: 541 FITMKPILKLDIK 553
FITMKPILKLDIK
Sbjct: 541 FITMKPILKLDIK 553
>gi|229093316 phospholipase B domain containing 2 isoform 1
precursor [Homo sapiens]
Length = 589
Score = 257 bits (657), Expect = 2e-68
Identities = 194/571 (33%), Positives = 283/571 (49%), Gaps = 63/571 (11%)
Query: 18 LLLLLLLLPLLLVTAEP-PKPAGVYYATAYWMPAEKTV---------QVKNVMDKNGDAY 67
L+L LL+ P L A P P G + PA ++ Q+ V ++ DA
Sbjct: 25 LVLALLVGPFLSGLAGAIPAPGGRWARDGQVPPASRSRSVLLDVSAGQLLMVDGRHPDAV 84
Query: 68 GFYN--NSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTNLYPQL 125
+ N N+++ TGW LE+ S ++ + + AG +E ++ + H+ N
Sbjct: 85 AWANLTNAIRETGWAFLELGT---SGQYNDSLQAYAAGVVEAAVSEELIYMHWMNTVVNY 141
Query: 126 IT----KPSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVGAKKRAI 181
+ ++++ F+E +W ++ ++ +W + Q+ GL + R
Sbjct: 142 CGPFEYEVGYCERLKSFLEANLEWMQEEMESNPDSPYWHQVRLTLLQLKGLEDSYEGRVS 201
Query: 182 LEGTKPMTLFQIQFL--NSVGDLLDLIPSLSPTKNGSLKVFKRWDMGHCSALIKVLPGFE 239
K T+ + FL GDL DL +L+ TK + G CSALIK+LPG
Sbjct: 202 FPAGK-FTIKPLGFLLLQLSGDLEDLELALNKTK-----IKPSLGSGSCSALIKLLPGQS 255
Query: 240 NILFAHSSWYTYAAMLRIYK-HW---------DFNVIDKDTSSSRLSFSSYPGFLESLDD 289
++L AH++W Y MLR+ K +W D+ ++ ++L FSSYPG + S DD
Sbjct: 256 DLLVAHNTWNNYQHMLRVIKKYWLQFREGPWGDYPLVP----GNKLVFSSYPGTIFSCDD 311
Query: 290 FYILSSGLILLQTTNSVFNKTLLKQVIPE-TLLSWQRVRVANMMADSGKRWADIFSKYNS 348
FYIL SGL+ L+TT N L K V P +L W R VAN +A G WADIF ++NS
Sbjct: 312 FYILGSGLVTLETTIGNKNPALWKYVRPRGCVLEWVRNIVANRLASDGATWADIFKRFNS 371
Query: 349 GTYNNQYMVLDLKK-VKLNHSLDKGTLYIVEQIPTYVEYSEQTDVL-RKGYWPSYNVPFH 406
GTYNNQ+M++D K + S L I+EQIP V +++T L +K YW SYN+P
Sbjct: 372 GTYNNQWMIVDYKAFIPGGPSPGSRVLTILEQIPGMVVVADKTSELYQKTYWASYNIPSF 431
Query: 407 EKIYNWSGYPLLVQKLGLDYSYDLAPRAKIFRRDQGKVTDTASMKYIMRYNNYKKDPYSR 466
E ++N SG LV + G +SYD +PRA+IFRR+Q V D SM +MRYN++ DP S
Sbjct: 432 ETVFNASGLQALVAQYGDWFSYDGSPRAQIFRRNQSLVQDMDSMVRLMRYNDFLHDPLSL 491
Query: 467 GDPC-------NTICCREDLNSPNPS---------PGGCYDTKVADIYLASQYTSYAISG 510
C N I R DLN N S G D KV + LA + A SG
Sbjct: 492 CKACNPQPNGENAISARSDLNPANGSYPFQALRQRSHGGIDVKVTSMSLARILSLLAASG 551
Query: 511 PTVQGGLPVFRWDR--FNKTLHQGMPEVYNF 539
PT +P F+W F+ LH G P+++ F
Sbjct: 552 PT-WDQVPPFQWSTSPFSGLLHMGQPDLWKF 581
>gi|229091322 phospholipase B domain containing 2 isoform 2
precursor [Homo sapiens]
Length = 557
Score = 223 bits (567), Expect = 5e-58
Identities = 178/569 (31%), Positives = 266/569 (46%), Gaps = 91/569 (15%)
Query: 18 LLLLLLLLPLLLVTAEP-PKPAGVYYATAYWMPAEKTV---------QVKNVMDKNGDAY 67
L+L LL+ P L A P P G + PA ++ Q+ V ++ DA
Sbjct: 25 LVLALLVGPFLSGLAGAIPAPGGRWARDGQVPPASRSRSVLLDVSAGQLLMVDGRHPDAV 84
Query: 68 GFYN--NSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTNLYPQL 125
+ N N+++ TGW LE+ S ++ + + AG +E ++ + H+ N
Sbjct: 85 AWANLTNAIRETGWAFLELGT---SGQYNDSLQAYAAGVVEAAVSEELIYMHWMNTVVNY 141
Query: 126 IT----KPSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVGAKKRAI 181
+ ++++ F+E +W ++ ++ +W + Q+ GL + R
Sbjct: 142 CGPFEYEVGYCERLKSFLEANLEWMQEEMESNPDSPYWHQVRLTLLQLKGLEDSYEGRVS 201
Query: 182 LEGTKPMTLFQIQFL--NSVGDLLDLIPSLSPTKNGSLKVFKRWDMGHCSALIKVLPGFE 239
K T+ + FL GDL DL +L+ TK + G CSALIK+LPG
Sbjct: 202 FPAGK-FTIKPLGFLLLQLSGDLEDLELALNKTK-----IKPSLGSGSCSALIKLLPGQS 255
Query: 240 NILFAHSSWYTYAAMLRIYK-HW---------DFNVIDKDTSSSRLSFSSYPGFLESLDD 289
++L AH++W Y MLR+ K +W D+ ++ ++L FSSYPG + S DD
Sbjct: 256 DLLVAHNTWNNYQHMLRVIKKYWLQFREGPWGDYPLVP----GNKLVFSSYPGTIFSCDD 311
Query: 290 FYILSSGLILLQTTNSVFNKTLLKQVIPE-TLLSWQRVRVANMMADSGKRWADIFSKYNS 348
FYIL SGL+ L+TT N L K V P +L W R VAN +A G WADIF ++NS
Sbjct: 312 FYILGSGLVTLETTIGNKNPALWKYVRPRGCVLEWVRNIVANRLASDGATWADIFKRFNS 371
Query: 349 GTYNNQYMVLDLKKVKLNHSLDKGTLYIVEQIPTYVEYSEQTDVLRKGYWPSYNVPFHEK 408
GT G + + + + +++ +K YW SYN+P E
Sbjct: 372 GT---------------------GMVVVAD---------KTSELYQKTYWASYNIPSFET 401
Query: 409 IYNWSGYPLLVQKLGLDYSYDLAPRAKIFRRDQGKVTDTASMKYIMRYNNYKKDPYSRGD 468
++N SG LV + G +SYD +PRA+IFRR+Q V D SM +MRYN++ DP S
Sbjct: 402 VFNASGLQALVAQYGDWFSYDGSPRAQIFRRNQSLVQDMDSMVRLMRYNDFLHDPLSLCK 461
Query: 469 PC-------NTICCREDLNSPNPS---------PGGCYDTKVADIYLASQYTSYAISGPT 512
C N I R DLN N S G D KV + LA + A SGPT
Sbjct: 462 ACNPQPNGENAISARSDLNPANGSYPFQALRQRSHGGIDVKVTSMSLARILSLLAASGPT 521
Query: 513 VQGGLPVFRWDR--FNKTLHQGMPEVYNF 539
+P F+W F+ LH G P+++ F
Sbjct: 522 -WDQVPPFQWSTSPFSGLLHMGQPDLWKF 549
>gi|79749430 FRAS1-related extracellular matrix protein 2
precursor [Homo sapiens]
Length = 3169
Score = 36.2 bits (82), Expect = 0.081
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 9 RPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGV-------YYATAYWMPAEKTVQVKN 58
+PG P PPP LLLLLLL L LV+ P +PA A A +PAE+ + + N
Sbjct: 21 QPG-PPPPPRLLLLLLLLLSLVSRVPAQPAAFGRALLSPGLAGAAGVPAEEAIVLAN 76
>gi|40255245 G protein-coupled receptor 51 [Homo sapiens]
Length = 941
Score = 35.4 bits (80), Expect = 0.14
Identities = 19/29 (65%), Positives = 19/29 (65%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTA 32
G PG P P PP LLLLLLLPLLL A
Sbjct: 8 GQPGPPPPPPPPPARLLLLLLLPLLLPLA 36
>gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo
sapiens]
Length = 607
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 6 PGGRPGL--PQPPPLLLLLLLLPLL----LVTAEPPKPAGVYYATA 45
PG R GL P PPPLLLLL LLPLL A P+P + A+A
Sbjct: 16 PGAR-GLRAPPPPPLLLLLALLPLLPAPGAAAAPAPRPPELQSASA 60
>gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo
sapiens]
Length = 610
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 6 PGGRPGL--PQPPPLLLLLLLLPLL----LVTAEPPKPAGVYYATA 45
PG R GL P PPPLLLLL LLPLL A P+P + A+A
Sbjct: 16 PGAR-GLRAPPPPPLLLLLALLPLLPAPGAAAAPAPRPPELQSASA 60
>gi|63025220 ring finger protein 215 [Homo sapiens]
Length = 377
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 5 GPGGRPGLPQPPP--------LLLLLLLLPLLLVTAEP 34
GP RP L PPP LLLLL LLPL L A P
Sbjct: 2 GPAARPALRSPPPPPPPPPSPLLLLLPLLPLWLGLAGP 39
>gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Homo
sapiens]
Length = 808
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 134 KVQDFMEKQDKWTRKNIKE---YKTDSFWRHTGYVMAQIDGLYVGAK---KRAILEGTK- 186
+ Q F EK + N KE Y +S+ ++ ++ LY+G + A+ G
Sbjct: 446 EAQKFREKLQEIKTLNQKEAVAYAVNSWTTSISGMLLKVGILYIGGQLVTSGAVSSGNLV 505
Query: 187 PMTLFQIQFLNSVGDLLDLIPSLSPTKNGSLKVFKRWD 224
L+Q+QF +V LL + P + S K+F+ D
Sbjct: 506 TFVLYQMQFTQAVEVLLSIYPRVQKAVGSSEKIFEYLD 543
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 32.0 bits (71), Expect = 1.5
Identities = 23/40 (57%), Positives = 23/40 (57%), Gaps = 11/40 (27%)
Query: 5 GPG----GRPGL---PQPPPLLLLLLLLPLLLVTAEPPKP 37
GPG GRP L P PPPLL LLLL LLL PP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLL----PPPP 46
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 32.0 bits (71), Expect = 1.5
Identities = 23/40 (57%), Positives = 23/40 (57%), Gaps = 11/40 (27%)
Query: 5 GPG----GRPGL---PQPPPLLLLLLLLPLLLVTAEPPKP 37
GPG GRP L P PPPLL LLLL LLL PP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLL----PPPP 46
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 32.0 bits (71), Expect = 1.5
Identities = 23/40 (57%), Positives = 23/40 (57%), Gaps = 11/40 (27%)
Query: 5 GPG----GRPGL---PQPPPLLLLLLLLPLLLVTAEPPKP 37
GPG GRP L P PPPLL LLLL LLL PP P
Sbjct: 11 GPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLL----PPPP 46
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 31.2 bits (69), Expect = 2.6
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 4 GGPGGRPGLPQP--PPLLLLLLLLPLLLVTAEPPKPAGVYYA 43
GGPGG PG QP PP L L P L +P YYA
Sbjct: 34 GGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYA 75
>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
sapiens]
Length = 832
Score = 30.8 bits (68), Expect = 3.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 6 PGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYW-MPAEKTVQV----KNVM 60
P P P LLL+LLLLP L ++ P + +W AEK + V N +
Sbjct: 34 PASAPARTPPCRLLLVLLLLPPLAASSRPRAWGAAAPSAPHWNETAEKNLGVLADEDNTL 93
Query: 61 DKNGDAYGFYNNSVK 75
+N + Y+N+++
Sbjct: 94 QQNSSSNISYSNAMQ 108
>gi|20336188 paired basic amino acid cleaving system 4 isoform e
preproprotein [Homo sapiens]
Length = 623
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|20336186 paired basic amino acid cleaving system 4 isoform c
preproprotein [Homo sapiens]
Length = 487
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|27894285 paired basic amino acid cleaving system 4 isoform f
preproprotein [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|20336190 paired basic amino acid cleaving system 4 isoform d
preproprotein [Homo sapiens]
Length = 652
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|20336184 paired basic amino acid cleaving system 4 isoform h
preproprotein [Homo sapiens]
Length = 962
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|20336182 paired basic amino acid cleaving system 4 isoform g
preproprotein [Homo sapiens]
Length = 975
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|4505577 paired basic amino acid cleaving system 4 isoform a
preproprotein [Homo sapiens]
Length = 969
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|20336180 paired basic amino acid cleaving system 4 isoform b
preproprotein [Homo sapiens]
Length = 956
Score = 30.4 bits (67), Expect = 4.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 GGPGGRPGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQVKNVMDKN 63
GGPG RP P+P LLLL L +A PP+P VY T +W A + + D+
Sbjct: 37 GGPGFRPLAPRPWRWLLLLAL--PAACSAPPPRP--VY--TNHW--AVQVLGGPAEADRV 88
Query: 64 GDAYGFYN 71
A+G+ N
Sbjct: 89 AAAHGYLN 96
>gi|153792351 ADAM metallopeptidase with thrombospondin type 1
motif, 8 preproprotein [Homo sapiens]
Length = 889
Score = 30.4 bits (67), Expect = 4.4
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 10 PGLPQPPPLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMP 49
P P+ PPLLLLLLLL L L P +PA A+ +P
Sbjct: 5 PAAPRWPPLLLLLLLL-LPLARGAPARPAAGGQASELVVP 43
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 30.0 bits (66), Expect = 5.8
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 10 PGLPQPPPLLLLLLLLPLLLVTAEPPKPAG 39
P P PPPLLLLLL L LL A +PAG
Sbjct: 54 PMSPPPPPLLLLLLSLALLGARAR-AEPAG 82
>gi|39777610 semaphorin 4B precursor [Homo sapiens]
Length = 837
Score = 30.0 bits (66), Expect = 5.8
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 12 LPQPPPLLLLLLLLPLLLVTAEPPKP 37
LP PPLLLLLLLL LL +PP P
Sbjct: 19 LPPRPPLLLLLLLLLLL----QPPPP 40
>gi|39777608 semaphorin 4B precursor [Homo sapiens]
Length = 837
Score = 30.0 bits (66), Expect = 5.8
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 12 LPQPPPLLLLLLLLPLLLVTAEPPKP 37
LP PPLLLLLLLL LL +PP P
Sbjct: 19 LPPRPPLLLLLLLLLLL----QPPPP 40
>gi|31083156 interleukin 20 receptor, alpha [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 5.8
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 8 GRPGL-PQP-PPLLLLLLLLP----LLLVTAEPPKPAGVYYAT------AYWMPAEKTVQ 55
GRP L P P PPLLLLLL P + V+ PKPA + + + W P E
Sbjct: 5 GRPALRPLPLPPLLLLLLAAPWGRAVPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQG 64
Query: 56 VK 57
VK
Sbjct: 65 VK 66
>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform b [Homo sapiens]
Length = 1143
Score = 29.6 bits (65), Expect = 7.5
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 5 GPGGRPGLPQPP-PLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQ 55
GPG R PP PL LLL LLPLL A+AY P + T+Q
Sbjct: 30 GPGTRRPTSGPPRPLWLLLPLLPLLAAPG----------ASAYSFPQQHTMQ 71
>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform a [Homo sapiens]
Length = 1145
Score = 29.6 bits (65), Expect = 7.5
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 5 GPGGRPGLPQPP-PLLLLLLLLPLLLVTAEPPKPAGVYYATAYWMPAEKTVQ 55
GPG R PP PL LLL LLPLL A+AY P + T+Q
Sbjct: 30 GPGTRRPTSGPPRPLWLLLPLLPLLAAPG----------ASAYSFPQQHTMQ 71
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 29.3 bits (64), Expect = 9.8
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 14 QPPPLLLLLLLLPLLLVTAEPPK 36
QPP LLLLLLLL LL V+ P+
Sbjct: 2 QPPSLLLLLLLLLLLCVSVVRPR 24
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,576,962
Number of Sequences: 37866
Number of extensions: 1074062
Number of successful extensions: 3700
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3607
Number of HSP's gapped (non-prelim): 63
length of query: 553
length of database: 18,247,518
effective HSP length: 107
effective length of query: 446
effective length of database: 14,195,856
effective search space: 6331351776
effective search space used: 6331351776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.