Guide to the Human Genome
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Name: PLBD1 Sequence: fasta or formatted (553aa) NCBI GI: 110227598
Description:

phospholipase B domain containing 1

Referenced in:

Lipid Metabolism
Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         25           2
 C cysteine            0.9          5           2
 D aspartate           6.0         33           2
 E glutamate           3.1         17           1
 F phenylalanine       4.0         22           1
 G glycine             6.9         38           2
 H histidine           1.6          9           1
 I isoleucine          5.4         30           2
 K lysine              7.6         42           2
 L leucine            10.7         59           8
 M methionine          3.3         18           2
 N asparagine          5.1         28           2
 P proline             6.1         34           3
 Q glutamine           3.6         20           1
 R arginine            3.8         21           2
 S serine              6.9         38           3
 T threonine           6.1         34           2
 V valine              5.4         30           1
 W tryptophan          2.2         12           1
 Y tyrosine            6.9         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase B domain containing 1 
PLBD2                 0.207   phospholipase B domain containing 2 isoform 1 precu...
PLBD2                 0.176   phospholipase B domain containing 2 isoform 2 precu...
FREM2                 0.010   FRAS1-related extracellular matrix protein 2 precurs...
GABBR2                0.009   G protein-coupled receptor 51 
RYK                   0.009   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.009   RYK receptor-like tyrosine kinase isoform 1 
RNF215                0.006   ring finger protein 215 
TAP1                  0.006   transporter 1, ATP-binding cassette, sub-family B [Ho...
ASTN2                 0.006   astrotactin 2 isoform c 
ASTN2                 0.006   astrotactin 2 isoform b 
ASTN2                 0.006   astrotactin 2 isoform a 
HOXA4                 0.005   homeobox A4 
ADAM23                0.005   ADAM metallopeptidase domain 23 preproprotein 
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform e ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform c ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform f ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform d ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.004   paired basic amino acid cleaving system 4 isoform b ...
ADAMTS8               0.004   ADAM metallopeptidase with thrombospondin type 1 mo...
C4orf48               0.004   hypothetical protein LOC401115 
SEMA4B                0.004   semaphorin 4B precursor 
SEMA4B                0.004   semaphorin 4B precursor 
IL20RA                0.004   interleukin 20 receptor, alpha 
CACNA2D2              0.004   calcium channel, voltage-dependent, alpha 2/delta su...
CACNA2D2              0.004   calcium channel, voltage-dependent, alpha 2/delta su...
NOTCH4                0.004   notch4 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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