Guide to the Human Genome
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Name: UBR1 Sequence: fasta or formatted (1749aa) NCBI GI: 28372497
Description:

ubiquitin protein ligase E3 component n-recognin 1

Referenced in:

Ubiquitin and Related Protein Modifications
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2        108           2
 C cysteine            3.4         59           2
 D aspartate           4.5         78           2
 E glutamate           8.6        150           3
 F phenylalanine       4.1         71           2
 G glycine             4.5         78           3
 H histidine           3.3         58           2
 I isoleucine          6.2        109           2
 K lysine              5.6         98           2
 L leucine            11.2        196           3
 M methionine          3.0         53           2
 N asparagine          3.4         60           2
 P proline             4.4         77           6
 Q glutamine           5.2         91           2
 R arginine            4.6         81           2
 S serine              6.7        118           3
 T threonine           4.3         76           2
 V valine              5.9        103           2
 W tryptophan          1.3         23           2
 Y tyrosine            3.5         62           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3 component n-recognin 1 [... 
UBR2                  0.460   ubiquitin protein ligase E3 component n-recognin 2 [...
UBR3                  0.029   E3 ubiquitin-protein ligase UBR3 
JAK2                  0.004   Janus kinase 2 
USPL1                 0.003   ubiquitin specific peptidase like 1 
EEA1                  0.003   early endosome antigen 1, 162kD 
ZNF470                0.003   zinc finger protein 470 
DLGAP4                0.003   disks large-associated protein 4 isoform c 
DLGAP4                0.003   disks large-associated protein 4 isoform b 
DLGAP4                0.003   disks large-associated protein 4 isoform a 
IKIP                  0.003   IKK interacting protein isoform 1 
LOC730429             0.002   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.002   PREDICTED: similar to ubiquitin protein ligase E3 c...
ZNF99                 0.002   zinc finger protein 99 
C14orf135             0.002   hepatitis C virus F protein-binding protein 2 [Homo...
TMCO5A                0.002   transmembrane and coiled-coil domains 5A 
TNNT3                 0.002   troponin T3, skeletal, fast isoform 2 
TNNT3                 0.002   troponin T3, skeletal, fast isoform 3 
TNNT3                 0.002   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.002   troponin T3, skeletal, fast isoform 4 
UBR5                  0.002   ubiquitin protein ligase E3 component n-recognin 5 [...
ZBTB7C                0.002   zinc finger and BTB domain containing 7C 
HTT                   0.002   huntingtin 
MYH10                 0.002   myosin, heavy polypeptide 10, non-muscle 
KIAA1598              0.002   shootin1 isoform a 
KIAA1598              0.002   shootin1 isoform b 
ZNF253                0.002   zinc finger protein 253 
AP3D1                 0.002   adaptor-related protein complex 3, delta 1 subunit ...
ZNF583                0.002   zinc finger protein 583 
ZNF583                0.002   zinc finger protein 583 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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