Guide to the Human Genome
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Name: NIPAL3 Sequence: fasta or formatted (406aa) NCBI GI: 10092687
Description:

NIPA-like domain containing 3

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         38           2
 C cysteine            1.5          6           1
 D aspartate           2.5         10           1
 E glutamate           4.2         17           2
 F phenylalanine       5.7         23           1
 G glycine             6.2         25           1
 H histidine           2.2          9           1
 I isoleucine          7.4         30           2
 K lysine              4.9         20           2
 L leucine            13.3         54           3
 M methionine          3.9         16           1
 N asparagine          3.2         13           2
 P proline             4.2         17           2
 Q glutamine           2.7         11           2
 R arginine            2.2          9           2
 S serine              8.4         34           4
 T threonine           4.2         17           2
 V valine              8.4         34           2
 W tryptophan          1.0          4           2
 Y tyrosine            4.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NIPA-like domain containing 3 
NIPAL2                0.369   NIPA-like domain containing 2 
NIPAL1                0.130   NIPA-like domain containing 1 
NIPAL4                0.130   ichthyin protein 
NIPA2                 0.123   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.123   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.123   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA1                 0.106   non-imprinted in Prader-Willi/Angelman syndrome 1 is...
NIPA2                 0.100   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA1                 0.089   non-imprinted in Prader-Willi/Angelman syndrome 1 i...
GPR128                0.009   G protein-coupled receptor 128 
MS4A8B                0.009   membrane-spanning 4-domains, subfamily A, member 8B ...
MPDU1                 0.006   mannose-P-dolichol utilization defect 1 
ITPR3                 0.006   inositol 1,4,5-triphosphate receptor, type 3 
SLC46A2               0.005   solute carrier family 46, member 2 
RNF145                0.005   ring finger protein 145 
KCNQ4                 0.005   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ4                 0.005   potassium voltage-gated channel KQT-like protein 4 i...
SLC17A4               0.005   solute carrier family 17 (sodium phosphate), member 4...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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