Guide to the Human Genome
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Name: NIPAL2 Sequence: fasta or formatted (368aa) NCBI GI: 13376097
Description:

NIPA-like domain containing 2

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         32           2
 C cysteine            1.1          4           1
 D aspartate           2.2          8           1
 E glutamate           2.4          9           1
 F phenylalanine       7.6         28           2
 G glycine             7.3         27           2
 H histidine           1.6          6           1
 I isoleucine          9.2         34           2
 K lysine              3.3         12           1
 L leucine            12.2         45           2
 M methionine          2.4          9           1
 N asparagine          4.3         16           1
 P proline             3.5         13           1
 Q glutamine           4.1         15           2
 R arginine            3.0         11           2
 S serine              6.0         22           1
 T threonine           7.3         27           3
 V valine              7.6         28           2
 W tryptophan          1.4          5           2
 Y tyrosine            4.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NIPA-like domain containing 2 
NIPAL3                0.405   NIPA-like domain containing 3 
NIPAL1                0.183   NIPA-like domain containing 1 
NIPAL4                0.178   ichthyin protein 
NIPA2                 0.176   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.176   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.176   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.149   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA1                 0.109   non-imprinted in Prader-Willi/Angelman syndrome 1 is...
NIPA1                 0.087   non-imprinted in Prader-Willi/Angelman syndrome 1 i...
TRPM8                 0.010   transient receptor potential cation channel, subfam...
PTGER2                0.010   prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom...
MARVELD2              0.009   MARVEL domain containing 2 isoform 1 
MARVELD2              0.009   MARVEL domain containing 2 isoform beta 
CD244                 0.009   CD244 natural killer cell receptor 2B4 
SLC19A3               0.009   solute carrier family 19, member 3 
CHRND                 0.007   nicotinic acetylcholine receptor delta polypeptide pr...
UBR4                  0.007   retinoblastoma-associated factor 600 
MFSD2                 0.007   major facilitator superfamily domain containing 2 i...
MFSD2                 0.007   major facilitator superfamily domain containing 2 is...
SLC22A23              0.007   solute carrier family 22, member 23 isoform a [Homo...
SDK1                  0.006   sidekick 1 
SLC9A11               0.006   solute carrier family 9, member 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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