Guide to the Human Genome
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Name: NIPA2 Sequence: fasta or formatted (360aa) NCBI GI: 57013274
Description:

non imprinted in Prader-Willi/Angelman syndrome 2 isoform a

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt mRNA [360aa] non imprinted in Prader-Willi/Angelman syndrome 2 isoform a
alt prot [341aa] non imprinted in Prader-Willi/Angelman syndrome 2 isoform b
alt mRNA [360aa] non imprinted in Prader-Willi/Angelman syndrome 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         27           2
 C cysteine            1.7          6           1
 D aspartate           2.2          8           2
 E glutamate           4.4         16           3
 F phenylalanine       6.1         22           2
 G glycine             9.2         33           2
 H histidine           2.2          8           1
 I isoleucine          8.3         30           2
 K lysine              4.4         16           3
 L leucine            13.3         48           3
 M methionine          2.5          9           1
 N asparagine          4.7         17           3
 P proline             2.8         10           1
 Q glutamine           1.7          6           1
 R arginine            3.1         11           2
 S serine              8.3         30           3
 T threonine           5.0         18           2
 V valine              8.3         30           2
 W tryptophan          1.4          5           2
 Y tyrosine            2.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   non imprinted in Prader-Willi/Angelman syndrome 2 is... 
NIPA2                 1.000   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 1.000   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.917   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPAL1                0.650   NIPA-like domain containing 1 
NIPAL4                0.569   ichthyin protein 
NIPA1                 0.359   non-imprinted in Prader-Willi/Angelman syndrome 1 is...
NIPA1                 0.296   non-imprinted in Prader-Willi/Angelman syndrome 1 i...
NIPAL2                0.181   NIPA-like domain containing 2 
NIPAL3                0.139   NIPA-like domain containing 3 
TMEM22                0.010   transmembrane protein 22 
TMEM22                0.010   transmembrane protein 22 
TMEM22                0.010   transmembrane protein 22 
LOC100289996          0.010   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.010   PREDICTED: hypothetical protein XP_002343076 
KIDINS220             0.009   kinase D-interacting substrate of 220 kDa 
OR8D4                 0.009   olfactory receptor, family 8, subfamily D, member 4 ...
C20orf185             0.007   antimicrobial peptide RYA3 
TM9SF1                0.007   transmembrane 9 superfamily member 1 isoform b [Homo...
TM9SF1                0.007   transmembrane 9 superfamily member 1 isoform a [Homo...
ND4                   0.007   NADH dehydrogenase subunit 4 
ND4                   0.007   NADH dehydrogenase subunit 4 
GPR180                0.007   G protein-coupled receptor 180 precursor 
OR13C4                0.006   olfactory receptor, family 13, subfamily C, member 4...
SLC35F1               0.006   solute carrier family 35, member F1 
SLC35E4               0.006   solute carrier family 35, member E4 
LIFR                  0.004   leukemia inhibitory factor receptor precursor 
LIFR                  0.004   leukemia inhibitory factor receptor precursor [Homo...
NME3                  0.004   nucleoside diphosphate kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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