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Search of human proteins with 149192824
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149192824 hypothetical protein LOC346653 isoform a [Homo
sapiens]
(309 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149192824 hypothetical protein LOC346653 isoform a [Homo sapi... 629 e-180
gi|193083150 hypothetical protein LOC346653 isoform b [Homo sapi... 602 e-172
gi|14211935 testes development-related NYD-SP18 [Homo sapiens] 268 6e-72
gi|222418633 family with sequence similarity 71, member B [Homo ... 76 3e-14
gi|23503301 hypothetical protein LOC196472 [Homo sapiens] 67 3e-11
gi|23957696 hypothetical protein LOC149647 [Homo sapiens] 65 8e-11
gi|89363024 hypothetical protein LOC161142 [Homo sapiens] 60 2e-09
gi|76253859 hypothetical protein LOC112703 [Homo sapiens] 59 4e-09
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 58 9e-09
gi|134142826 pericentriolar material 1 [Homo sapiens] 33 0.42
gi|11321634 CD2-associated protein [Homo sapiens] 32 0.55
gi|33598950 podocalyxin-like isoform 2 precursor [Homo sapiens] 31 1.6
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 31 1.6
gi|91982772 mucin 17 [Homo sapiens] 30 2.1
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 30 3.5
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 30 3.5
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 30 3.5
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 30 3.5
gi|83367077 mucin 16 [Homo sapiens] 29 4.6
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 29 4.6
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 29 4.6
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 29 6.0
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 29 6.0
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens] 29 6.0
gi|13376810 enhancer of polycomb 1 [Homo sapiens] 29 6.0
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 29 6.0
gi|5803221 WD repeat-containing protein 3 [Homo sapiens] 28 7.9
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 28 7.9
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6... 28 7.9
>gi|149192824 hypothetical protein LOC346653 isoform a [Homo
sapiens]
Length = 309
Score = 629 bits (1622), Expect = e-180
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQ 60
MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQ
Sbjct: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQ 60
Query: 61 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 120
VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL
Sbjct: 61 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 120
Query: 121 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 180
SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI
Sbjct: 121 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 180
Query: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 240
TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ
Sbjct: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 240
Query: 241 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 300
LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS
Sbjct: 241 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 300
Query: 301 YLGEHFLGA 309
YLGEHFLGA
Sbjct: 301 YLGEHFLGA 309
>gi|193083150 hypothetical protein LOC346653 isoform b [Homo
sapiens]
Length = 300
Score = 602 bits (1552), Expect = e-172
Identities = 300/309 (97%), Positives = 300/309 (97%), Gaps = 9/309 (2%)
Query: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQ 60
MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQ
Sbjct: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQ--------- 51
Query: 61 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 120
VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL
Sbjct: 52 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 111
Query: 121 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 180
SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI
Sbjct: 112 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 171
Query: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 240
TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ
Sbjct: 172 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 231
Query: 241 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 300
LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS
Sbjct: 232 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 291
Query: 301 YLGEHFLGA 309
YLGEHFLGA
Sbjct: 292 YLGEHFLGA 300
>gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
Length = 344
Score = 268 bits (684), Expect = 6e-72
Identities = 151/290 (52%), Positives = 189/290 (65%), Gaps = 13/290 (4%)
Query: 3 KIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVT 62
+ RGL P EP PG LGVE GLLC+++HSPEFNLF +SVVFESNFIQ V
Sbjct: 35 EFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQ---------VK 85
Query: 63 KPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSR 122
+ NWRDV + S T+ LGVTSSVP LPLPN+LLMA+V W QG TW+ P AP I L R
Sbjct: 86 RGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKR 145
Query: 123 LLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITT 182
+LPL++VEL++ D QRIL++RTVTEKIYYLKLH HPE VF FW+RLV+ILQKGLSITT
Sbjct: 146 ILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITT 205
Query: 183 KDPRIKFTHCLVPK-MPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG--KP 239
KDPRI THCLVPK + S ++ L + QPSE L+ L + S + SQ+
Sbjct: 206 KDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQ 265
Query: 240 QLTADRNNDTAIEIDNCSSYKIPSPVAS-PINLNIPMRAALSHSLWEQED 288
Q + +E + SS K S S P ++ RA+ ++ WE+E+
Sbjct: 266 QNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWEREN 315
>gi|222418633 family with sequence similarity 71, member B [Homo
sapiens]
Length = 605
Score = 76.3 bits (186), Expect = 3e-14
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 17/155 (10%)
Query: 29 QLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSSVPSL 88
QL + E+N+F + +FESNFIQ + K G DV V +G+ + P L
Sbjct: 31 QLYNRGEYNIFKYAPMFESNFIQ---------INKKGEVIDVHNRVRMVTVGIVCTSPIL 81
Query: 89 PLPNVLLMANVTWPQGPFTTWST----PGDAPV--INLSRLLPLKYVELRIYDRLQRILR 142
PLP+V+++A T W G PV + L+RLLPLK+V++ I+D ++ LR
Sbjct: 82 PLPDVMVLAQPTKICEQHVRWGRFAKGRGRRPVKTLELTRLLPLKFVKISIHDHEKQQLR 141
Query: 143 VRTVTEKIYYLKL--HEKHPEIVFQFWVRLVKILQ 175
++ T + +YL+L E +F +W +LV +L+
Sbjct: 142 LKLATGRTFYLQLCPSSDTREDLFCYWEKLVYLLR 176
>gi|23503301 hypothetical protein LOC196472 [Homo sapiens]
Length = 241
Score = 66.6 bits (161), Expect = 3e-11
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 25 GLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSS 84
G L + ++ E+ +F + +FES+FIQ ++K G DV + V +G+ +
Sbjct: 26 GKLQRQLYKGEYTIFRYAPMFESDFIQ---------ISKRGEVIDVHNRARMVTMGIVRT 76
Query: 85 VPSLPLPNVLLMANVTWPQ-----GPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQR 139
P L LP+V+L+A GP T A ++ L+RLLPL +V++ I++ +++
Sbjct: 77 SPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKK 136
Query: 140 ILRVRTVTEKIYYLKL--HEKHPEIVFQFWVRLVKILQ 175
L ++ T + +YL+L E +F W LV IL+
Sbjct: 137 QLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILR 174
>gi|23957696 hypothetical protein LOC149647 [Homo sapiens]
Length = 594
Score = 65.1 bits (157), Expect = 8e-11
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 25 GLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSS 84
G L + ++ E+++F + +FES+FIQ +TK G DV V +G+ +
Sbjct: 26 GKLQRQLYKGEYDIFKYAPIFESDFIQ---------ITKRGEVIDVHNRVRMVTMGIART 76
Query: 85 VPSLPLPNVLLMANVTW------PQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQ 138
P LPLP+V+L+A G T A + L+RLLPL++V + + D +
Sbjct: 77 SPILPLPDVMLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLRFVRISVQDHEK 136
Query: 139 RILRVRTVTEKIYYLKLHE--KHPEIVFQFWVRLVKILQ 175
+ LR++ T + YL+L + +F +W +L+ +L+
Sbjct: 137 QQLRLKFATGRSCYLQLCPALDTRDDLFAYWEKLIYLLR 175
>gi|89363024 hypothetical protein LOC161142 [Homo sapiens]
Length = 422
Score = 60.1 bits (144), Expect = 2e-09
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 27 LCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSSVP 86
L ++ E+ F + + ESNFIQ + + NW V +G+ S
Sbjct: 29 LQNMLDGGEYAPFVSPPMLESNFIQVNRRGESIYLHNRANW---------VTVGICFSSS 79
Query: 87 SLPLPNVLLMANVTW-----PQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRIL 141
+ +PNV+L+A++T + F + T A + L+R LPL++V L ++D L
Sbjct: 80 THKIPNVMLLAHLTPGAQKDTETLFKSLLTSPPAEKLVLTRFLPLQFVTLSVHDAENMSL 139
Query: 142 RVRTVTEKIYYLKL--HEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTHCLVPKMPT 199
+V+ V+ + YYL+L + +F WV L+ +L + + +K + + T
Sbjct: 140 KVKLVSGRAYYLQLCTSAYKQDTLFSQWVALISLLNQEKAKVSKVSEVSSLSGI-----T 194
Query: 200 NSTETT 205
NST+ T
Sbjct: 195 NSTDIT 200
>gi|76253859 hypothetical protein LOC112703 [Homo sapiens]
Length = 231
Score = 59.3 bits (142), Expect = 4e-09
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 29/147 (19%)
Query: 27 LCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSSVP 86
L + + S EF+ F + +FESNF+Q VT+ G E + V +GV +S P
Sbjct: 96 LQRYLQSGEFDQFRDFPIFESNFVQ---------VTRLG------EVANEVTMGVAASSP 140
Query: 87 SLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTV 146
+L LP++LL+A G + L L PLK+V+L ++D+ + L V+
Sbjct: 141 ALELPDLLLLAGPAKENGH------------LQLFGLFPLKFVQLFVHDKSRCQLEVKLN 188
Query: 147 TEKIYYLKLHE--KHPEIVFQFWVRLV 171
T + +YL+L K + F WVRL+
Sbjct: 189 TSRTFYLQLRAPLKTRDREFGQWVRLL 215
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 58.2 bits (139), Expect = 9e-09
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 44 VFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQ 103
+FESNF+Q VT G V + + +GV +S+P L LP++LL+ +
Sbjct: 43 MFESNFVQ---------VTHQGGPVFVNHRTNRLAMGVAASLPGLVLPDILLIGQPAEDR 93
Query: 104 GPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIV 163
D + L+R++PL V L ++D L++R V+ + YYL L E+
Sbjct: 94 ----------DCSGLVLTRMIPLDLVHLCVHDLSAWRLKLRLVSGRQYYLALDAPDNEVG 143
Query: 164 FQF--WVRLVKILQK 176
F F WVRL+ +LQ+
Sbjct: 144 FLFHCWVRLINLLQE 158
>gi|134142826 pericentriolar material 1 [Homo sapiens]
Length = 2024
Score = 32.7 bits (73), Expect = 0.42
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 193 LVPKMP-TNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLS 236
LVP++ S + TPE+SL SP P+++ E SG+ SQ S
Sbjct: 1914 LVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKS 1958
>gi|11321634 CD2-associated protein [Homo sapiens]
Length = 639
Score = 32.3 bits (72), Expect = 0.55
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 44 VFESNFIQTHVPEADFQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQ 103
+F SNF++ + +VT G + + S TV+ G TS +PSL + +VT P+
Sbjct: 156 LFPSNFVK------ELEVTDDGETHEAQDDSETVLAGPTSPIPSLGNVSETASGSVTQPK 209
>gi|33598950 podocalyxin-like isoform 2 precursor [Homo sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT-AIEI 253
P N+T+TT ++S ++P P+ + ++A + S S ++ A T +
Sbjct: 28 PSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSS 87
Query: 254 DNCSSYKIPSPVASPINLNI 273
D+ + + V+ P+N +
Sbjct: 88 DSPGTTTLAQQVSGPVNTTV 107
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT-AIEI 253
P N+T+TT ++S ++P P+ + ++A + S S ++ A T +
Sbjct: 28 PSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSS 87
Query: 254 DNCSSYKIPSPVASPINLNI 273
D+ + + V+ P+N +
Sbjct: 88 DSPGTTTLAQQVSGPVNTTV 107
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 30.4 bits (67), Expect = 2.1
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSE---PLVLLAAEQTSGSFSQLSG 237
T P + + + +NST T PE L PSE PL ++ TS + S+
Sbjct: 3595 TPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPSEVSTPLTIMPVSTTSVTISEAGT 3654
Query: 238 KPQLTADRNNDTAIEIDNCSSYKIPSPVASPI 269
L D + SS P PI
Sbjct: 3655 ASTLPVDTSTPVITSTQVSSSPVTPEGTTMPI 3686
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 29.6 bits (65), Expect = 3.5
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENS-----LLSSPQPSEPLVLLAAEQTSGSFSQL 235
+T + ++ + L+ PT T T E S SPQ + PL + TSG SQ
Sbjct: 348 STLEGQLNESMFLLSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKI----TSGHLSQQ 403
Query: 236 SGKPQLTADRNNDTAIE----IDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNE 291
+ Q+ D+ + IDN K P L++P + + +DWN+
Sbjct: 404 DLESQMRELIYTDSDLVVTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWND 463
Query: 292 HLLQV 296
L QV
Sbjct: 464 FLQQV 468
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 3.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNND----TA 250
P++ T T T P L+S+P S + G SQ + + +TAD+ +
Sbjct: 453 PRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSP 512
Query: 251 IEIDNCSSYKIPSP 264
+ SS + PSP
Sbjct: 513 RSLQRSSSQRSPSP 526
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 29.6 bits (65), Expect = 3.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNND----TA 250
P++ T T T P L+S+P S + G SQ + + +TAD+ +
Sbjct: 350 PRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSP 409
Query: 251 IEIDNCSSYKIPSP 264
+ SS + PSP
Sbjct: 410 RSLQRSSSQRSPSP 423
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 29.6 bits (65), Expect = 3.5
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 129 VELRIYDRLQRILRVRTVTEKIYYL--------KLHEKHPEIVFQFWVRLVKILQKGLSI 180
++L+++ ++++ VRT+T IYY K+HEK + +++ S
Sbjct: 237 MDLKVHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFT------LIDGIRVATGSYSF 290
Query: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG-KP 239
T D ++ ++ ++ L + +P P LL+ Q+S F L+ KP
Sbjct: 291 TWTDGKLNSSNLVILSGQVVEHFDLEFRILYAQSKPISP-KLLSHFQSSNKFDHLTNRKP 349
Query: 240 Q 240
Q
Sbjct: 350 Q 350
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.3 bits (64), Expect = 4.6
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 193 LVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIE 252
++P PT + T L+S P EPLVL +EQT+ + + + T ++
Sbjct: 1420 VIPTSPTIGSSTLE----LTSDVPGEPLVLAPSEQTTITLPMATWLSTSLTEEMASTDLD 1475
Query: 253 IDNCSS----YKIPSPVASP 268
I + SS + I P+++P
Sbjct: 1476 ISSPSSPMSTFAIFPPMSTP 1495
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 29.3 bits (64), Expect = 4.6
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 198 PTNSTETTPENSLLSSPQPSEP--LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDN 255
P+ STE E + + P PSEP L T F+ + P ++ E D+
Sbjct: 882 PSQSTEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPTPSSGPQPGSENGPEPDS 941
Query: 256 CSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIA 299
S+ P P P AA + L Q W L VH A
Sbjct: 942 SSTRPEPEPSGDPTGAG--SSAAPTMWLGAQNGW----LYVHSA 979
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 4.6
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 198 PTNSTETTPENSLLSSPQPSEP--LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDN 255
P+ STE E + + P PSEP L T F+ + P ++ E D+
Sbjct: 888 PSQSTEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPTPSSGPQPGSENGPEPDS 947
Query: 256 CSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIA 299
S+ P P P AA + L Q W L VH A
Sbjct: 948 SSTRPEPEPSGDPTGAG--SSAAPTMWLGAQNGW----LYVHSA 985
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 28.9 bits (63), Expect = 6.0
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 254
P++P +++ ++ SL+ LL ++ TSG+F S Q + + I
Sbjct: 1012 PRLPISASHSSKTRSLVGG--------LLQSKFTSGAFLSPSVSVQECRTPRAASLMNIP 1063
Query: 255 NCSSYKIPSPVASPINLNIP 274
+ SS+ +P P+ S + P
Sbjct: 1064 STSSWSVPPPLTSVFTMPSP 1083
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 28.9 bits (63), Expect = 6.0
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 254
P++P +++ ++ SL+ LL ++ TSG+F S Q + + I
Sbjct: 1012 PRLPISASHSSKTRSLVGG--------LLQSKFTSGAFLSPSVSVQECRTPRAASLMNIP 1063
Query: 255 NCSSYKIPSPVASPINLNIP 274
+ SS+ +P P+ S + P
Sbjct: 1064 STSSWSVPPPLTSVFTMPSP 1083
>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
Length = 960
Score = 28.9 bits (63), Expect = 6.0
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 132 RIYDRLQRILRVRTVT-EKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFT 190
R+ RLQ ++ T+ EK ++ K E+ + WV+ K+ Q +T +P+ +
Sbjct: 609 RLEARLQGMVTETTMKWEKECERRVAAKQLEMQNKLWVKDEKLKQLKAIVT--EPKTE-- 664
Query: 191 HCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTA 250
P+ P+ + SP P A+ ++G QL +PQL N+ ++
Sbjct: 665 ---KPERPSRERDREKVTQRSVSPSPVPLSSNYIAQISNGQ--QLMSQPQLHRRSNSCSS 719
Query: 251 IEIDNCSS---YKIPS 263
I + +C S KIP+
Sbjct: 720 ISVASCISEWEQKIPT 735
>gi|13376810 enhancer of polycomb 1 [Homo sapiens]
Length = 836
Score = 28.9 bits (63), Expect = 6.0
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 202 TETTPENSLLSSPQPSEPLVLLAAE--QTSGSFSQLSGKPQLTADRNNDTAIEIDNCSSY 259
+ TTP + +SP + +L + QTS S S LS Q+TA + T + I N
Sbjct: 700 SSTTPTALVHTSPSTAGSALLQPSNITQTSSSHSALS--HQVTAANSATTQVLIGNNIRL 757
Query: 260 KIPSPVASPINLNIPMRA 277
+PS VA+ +N P+ A
Sbjct: 758 TVPSSVAT-VNSIAPINA 774
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 28.9 bits (63), Expect = 6.0
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 195 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 254
PKM T P NS L+ P P++ + + GS++ + G LT+D +
Sbjct: 448 PKMDEKIAFTIP-NSPLALPADLVPILGDQSNEKGGSYNSVVGAAPLTSDPPTPPS---- 502
Query: 255 NCSSYKIPSPVASPINLNIPMRAALS 280
+ S+K P SPI++ + LS
Sbjct: 503 STPSFKPPVTRESPISMCVDSPPPLS 528
>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
Length = 943
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 129 VELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEI--VFQFWVRLVKILQKGLSITTKDP 185
VE+ + D +QR+ ++T + + +H H E+ VF LV++ S+ T P
Sbjct: 345 VEMSLQDEIQRVTNIKTSAKIKSFDLIHSPHGELKAVFLLQNNLVELYSLNPSLPTPQP 403
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 194 VPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEI 253
+P +P P SL + P+P P A+ S S +P L A N++ ++
Sbjct: 588 MPALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDS 647
Query: 254 D 254
D
Sbjct: 648 D 648
>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
isoform a [Homo sapiens]
Length = 1047
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 196 KMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEI 253
++ T S +T N L + Q + P + L+AE T+ LS + LTA DT EI
Sbjct: 172 ELDTASRKTQRVNKTLPAGQKNLPEIPLSAEVTTEESFYLSIQKDLTALLTGDTQAEI 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,704,811
Number of Sequences: 37866
Number of extensions: 675937
Number of successful extensions: 2102
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 48
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.