Guide to the Human Genome
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Search of human proteins with 148922889

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148922889 scleraxis homolog B [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148922889 scleraxis homolog B [Homo sapiens]                       419   e-118
gi|186972126 scleraxis homolog A [Homo sapiens]                       419   e-118
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...   181   5e-46
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H...    79   3e-15
gi|116805332 musculin [Homo sapiens]                                   78   6e-15
gi|4507741 twist [Homo sapiens]                                        77   8e-15
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi...    74   1e-13
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    72   2e-13
gi|17981708 twist homolog 2 [Homo sapiens]                             69   3e-12
gi|38202237 transcription factor 21 [Homo sapiens]                     69   4e-12
gi|38202239 transcription factor 21 [Homo sapiens]                     69   4e-12
gi|21553337 atonal homolog 7 [Homo sapiens]                            67   8e-12
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9...    67   1e-11
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    67   1e-11
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    67   1e-11
gi|5031943 nescient helix loop helix 1 [Homo sapiens]                  67   1e-11
gi|68989258 neurogenin 3 [Homo sapiens]                                64   1e-10
gi|38455396 neurogenin 1 [Homo sapiens]                                63   1e-10
gi|31077092 neurogenin 2 [Homo sapiens]                                63   2e-10
gi|161484632 nescient helix loop helix 2 [Homo sapiens]                62   3e-10
gi|5031945 nescient helix loop helix 2 [Homo sapiens]                  62   3e-10
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    62   4e-10
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi...    62   4e-10
gi|4885075 atonal homolog 1 [Homo sapiens]                             61   6e-10
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]          60   1e-09
gi|98986461 neurogenic differentiation 2 [Homo sapiens]                59   4e-09
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]          58   6e-09
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]     57   1e-08
gi|121114306 neurogenic differentiation 1 [Homo sapiens]               56   2e-08
gi|27475985 neurogenic differentiation 6 [Homo sapiens]                55   3e-08

>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score =  419 bits (1077), Expect = e-118
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
           MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
Sbjct: 1   MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60

Query: 61  AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
           AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
Sbjct: 61  AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120

Query: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
           SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
Sbjct: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180

Query: 181 FCLSNQRKLSKDRDRKTAIRS 201
           FCLSNQRKLSKDRDRKTAIRS
Sbjct: 181 FCLSNQRKLSKDRDRKTAIRS 201


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score =  419 bits (1077), Expect = e-118
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
           MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
Sbjct: 1   MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60

Query: 61  AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
           AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
Sbjct: 61  AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120

Query: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
           SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
Sbjct: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180

Query: 181 FCLSNQRKLSKDRDRKTAIRS 201
           FCLSNQRKLSKDRDRKTAIRS
Sbjct: 181 FCLSNQRKLSKDRDRKTAIRS 201


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score =  181 bits (458), Expect = 5e-46
 Identities = 114/197 (57%), Positives = 125/197 (63%), Gaps = 20/197 (10%)

Query: 1   MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRR---AG 57
           M+FA LRP      LYP+V  LSEDE+  S+S  SD+          G + ARR     G
Sbjct: 1   MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQS----FGCCEGPEAARRGPGPGG 55

Query: 58  GRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETL 117
           GRRAGGGG  G P    RQR  ANARERDRT SVNTAFTALRTLIPTEP DRKLSKIETL
Sbjct: 56  GRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETL 114

Query: 118 RLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQ 177
           RLASSYI+HL NVLL G++  DGQPC      F AA +         P A DG   QP+ 
Sbjct: 115 RLASSYIAHLANVLLLGDSADDGQPC------FRAAGSAK----GAVPAAADG-GRQPRS 163

Query: 178 ICTFCLSNQRKLSKDRD 194
           ICTFCLSNQRK    RD
Sbjct: 164 ICTFCLSNQRKGGGRRD 180


>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
           sapiens]
          Length = 217

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 57  GGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIET 116
           GG   G G PG    R  ++R TAN +ER RT S+N+AF  LR  IP  PAD KLSKI+T
Sbjct: 81  GGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKT 140

Query: 117 LRLASSYISHLGNVLLAGEACGDGQ 141
           LRLA+SYI++L ++L   +  G+ +
Sbjct: 141 LRLATSYIAYLMDLLAKDDQNGEAE 165


>gi|116805332 musculin [Homo sapiens]
          Length = 206

 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 20/122 (16%)

Query: 30  SDSSGSDEKPCRVHAARCGLQGARRRAGGRR-----AGGGGPGGRPG---REP------- 74
           SD+S ++E+       RC L  A    G +R     AGGGG GG  G   ++P       
Sbjct: 42  SDNSSAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSA 101

Query: 75  -----RQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGN 129
                 QR+ ANARER R   ++ AF+ L+T +P  P D KLSK++TLRLASSYI+HL  
Sbjct: 102 AECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQ 161

Query: 130 VL 131
           +L
Sbjct: 162 LL 163


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 51/108 (47%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 29  GSDSSGSDEKPCR-VHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDR 87
           G D  GS  +  R   +A CG  G     GG  +GGG P      +  QR  AN RER R
Sbjct: 62  GGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQT-QRVMANVRERQR 120

Query: 88  TNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
           T S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI  L  VL + E
Sbjct: 121 TQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 167


>gi|29126247 basic helix-loop-helix family, member a15 [Homo
           sapiens]
          Length = 189

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 32  SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSV 91
           + G   +P R  AAR   +G RRR G       GPGGR     ++R  +N RER R + +
Sbjct: 38  AKGLRSRPARA-AARAPGEGRRRRPGP-----SGPGGRRDSSIQRRLESNERERQRMHKL 91

Query: 92  NTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
           N AF ALR +IP   AD+KLSKIETL LA +YI  L   +L
Sbjct: 92  NNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATIL 132


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 11/95 (11%)

Query: 56  AGGRRAGGGGPGGRPGREP-----------RQRHTANARERDRTNSVNTAFTALRTLIPT 104
           A    A   GP  RPG+ P           R++ +   +ER RT S+N+AF  LR  IP 
Sbjct: 64  AAAAAATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELRECIPN 123

Query: 105 EPADRKLSKIETLRLASSYISHLGNVLLAGEACGD 139
            PAD KLSKI+TLRLA+SYI++L +VL      GD
Sbjct: 124 VPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGD 158


>gi|17981708 twist homolog 2 [Homo sapiens]
          Length = 160

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 20  SPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAG---GRRAGGGGPGGRPGREPR- 75
           SP+S  +  G+     + +P R    R   + +        G+R   G P  +   E + 
Sbjct: 7   SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQS 66

Query: 76  QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
           QR  AN RER RT S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI  L  VL + E
Sbjct: 67  QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 125


>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 26  EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
           E+  +  +GS +K       R GL G RR+A  +++   G   + G++  QR+ ANARER
Sbjct: 39  EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89

Query: 86  DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
            R   ++ AF+ L+T +P  P D KLSK++TLRLASSYI+HL  +L
Sbjct: 90  ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 26  EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
           E+  +  +GS +K       R GL G RR+A  +++   G   + G++  QR+ ANARER
Sbjct: 39  EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89

Query: 86  DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
            R   ++ AF+ L+T +P  P D KLSK++TLRLASSYI+HL  +L
Sbjct: 90  ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135


>gi|21553337 atonal homolog 7 [Homo sapiens]
          Length = 152

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 38  KPCRVHAARCGLQGARRRAGGRRAGGGGPG-GRPGREPRQRHTANARERDRTNSVNTAFT 96
           K C+      G + A   AGG    G   G GR     R+R  ANARER R   +NTAF 
Sbjct: 2   KSCKPSGPPAGARVAPPCAGGTECAGTCAGAGRLESAARRRLAANARERRRMQGLNTAFD 61

Query: 97  ALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACG 138
            LR ++P    D+KLSK ETL++A SYI  L  +L   E  G
Sbjct: 62  RLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFG 103


>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 203

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 23  SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
           +ED        G D      + A C    A   AG RRA       RP R   +R  AN 
Sbjct: 20  AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72

Query: 83  RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
           RER R    N AF ALR  +  +   ++LSKI TLR A   I+ L  VL A  A    CG
Sbjct: 73  RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132

Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
             + CH   A       G+ PPPP  P     +  +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 23  SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
           +ED        G D      + A C    A   AG RRA       RP R   +R  AN 
Sbjct: 20  AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72

Query: 83  RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
           RER R    N AF ALR  +  +   ++LSKI TLR A   I+ L  VL A  A    CG
Sbjct: 73  RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132

Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
             + CH   A       G+ PPPP  P     +  +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 23  SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
           +ED        G D      + A C    A   AG RRA       RP R   +R  AN 
Sbjct: 20  AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72

Query: 83  RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
           RER R    N AF ALR  +  +   ++LSKI TLR A   I+ L  VL A  A    CG
Sbjct: 73  RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132

Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
             + CH   A       G+ PPPP  P     +  +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168


>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
          Length = 133

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 47/102 (46%), Positives = 53/102 (51%), Gaps = 26/102 (25%)

Query: 56  AGGRRAGGGGPGG---------RPGR---------EPRQRHTANA--------RERDRTN 89
           AG   AG GGPGG          PGR         E R+R  A A        RER R  
Sbjct: 30  AGPDGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVE 89

Query: 90  SVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
           + N AF  LR L+PT P D+KLSKIE LRLA  YIS+L +VL
Sbjct: 90  AFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 131


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 23  SEDEDRGSDSSGSDEKPCRVHAARC---GLQGARRRAGGRRAGGGGPGGRPGREPRQRHT 79
           SEDE     S+       R + A     G +GA R+   RR G   P        ++R  
Sbjct: 25  SEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR 84

Query: 80  ---ANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE- 135
              AN RER+R +++N+A  ALR ++PT P D KL+KIETLR A +YI  L   L   + 
Sbjct: 85  RKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADH 144

Query: 136 ----------ACGD-----GQPCHSGPAFFHAARAGSPPP 160
                      CG+     G P   G  +   ++AGS  P
Sbjct: 145 SLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSP 184


>gi|38455396 neurogenin 1 [Homo sapiens]
          Length = 237

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 45/188 (23%)

Query: 19  VSPLSEDEDRGSDSSG--SDEKPCRVHAARCGLQG----ARRRAGGRRAGGGGPGGRPGR 72
           +S L      GSD SG  +DE+ C          G    ARR A         PG +   
Sbjct: 9   ISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASEVPGAQDDE 68

Query: 73  EPRQRHT---------------------ANARERDRTNSVNTAFTALRTLIPTEPADRKL 111
           + R+R                       AN RER+R +++N A  ALR+++P+ P D KL
Sbjct: 69  QERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKL 128

Query: 112 SKIETLRLASSYISHLGNVL-LAGEACGDGQPCHSGPAFFHAARAGSPPP------PPPP 164
           +KIETLR A +YI  L   L LA +    G            AR    PP      P PP
Sbjct: 129 TKIETLRFAYNYIWALAETLRLADQGLPGG-----------GARERLLPPQCVPCLPGPP 177

Query: 165 PPARDGEN 172
            PA D E+
Sbjct: 178 SPASDAES 185


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 52/160 (32%), Positives = 65/160 (40%), Gaps = 43/160 (26%)

Query: 32  SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGG----------------------R 69
           SS +DE+         G  G  RR  G  AG G  GG                      R
Sbjct: 34  SSSADEE----EEEEPGASGGARRQRGAEAGQGARGGVAAGAEGCRPARLLGLVHDCKRR 89

Query: 70  PGR-----------------EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLS 112
           P R                 +  +R  AN RER+R +++N A  ALR ++PT P D KL+
Sbjct: 90  PSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLT 149

Query: 113 KIETLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHA 152
           KIETLR A +YI  L   L   + CG G     G  F  A
Sbjct: 150 KIETLRFAHNYIWALTETLRLADHCGGGGGGLPGALFSEA 189


>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 19  VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
           VS L   E+   D  G        H  +   +  RRR   RRA             + R 
Sbjct: 35  VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80

Query: 79  TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
               RER R  + N AF  LR L+PT P D+KLSKIE LRLA  YIS+L +VL
Sbjct: 81  AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133


>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 19  VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
           VS L   E+   D  G        H  +   +  RRR   RRA             + R 
Sbjct: 35  VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80

Query: 79  TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
               RER R  + N AF  LR L+PT P D+KLSKIE LRLA  YIS+L +VL
Sbjct: 81  AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 48  GLQGARRRAGGRRAGGGGPGGRPGREPRQ-RHTANARERDRTNSVNTAFTALRTLIPTEP 106
           GL GA   A  RR        R   E +Q R  AN RER R  S+N AF  LR+ IPT P
Sbjct: 140 GLSGAAAAAARRRRRV-----RSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLP 194

Query: 107 ADRKLSKIETLRLASSYISHLGNVLLA------GEACGDGQPCHSG 146
            +++LSK++TLRLA  YI+ L  ++ A      G A G G P   G
Sbjct: 195 YEKRLSKVDTLRLAIGYINFLSELVQADLPLRGGGAGGCGGPGGGG 240


>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
           sapiens]
          Length = 280

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 48/126 (38%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 67  GGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISH 126
           G +P +  R+  T N+RER R  +VN AF  LR L+PT P DRKLSK E LRLA  YI  
Sbjct: 143 GHQPQKVARRVFT-NSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGF 201

Query: 127 LGNVL---LAGEACGDGQP--------------CHSGPAFFHAARAGSPPPPPPPPPARD 169
           L  +L    A  A G   P                 G      A A S P PP  P    
Sbjct: 202 LVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPDGSP 261

Query: 170 GENTQP 175
           G   +P
Sbjct: 262 GGAARP 267


>gi|4885075 atonal homolog 1 [Homo sapiens]
          Length = 354

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 29  GSDSSGSDEKPCRVHAARCGLQGAR--RRAGGRRAGGGGPGGRPGREPRQRHTANARERD 86
           G  SS     P +V    C L+G       G  R          G + ++R  ANARER 
Sbjct: 111 GGASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQKQRRLAANARERR 170

Query: 87  RTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACGDGQPCHSG 146
           R + +N AF  LR +IP+   D+KLSK ETL++A  YI+ L  +L               
Sbjct: 171 RMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL--------------- 215

Query: 147 PAFFHAARAGSPPPPPP 163
                    G  PPPPP
Sbjct: 216 ----QTPSGGEQPPPPP 228


>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
          Length = 108

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query: 81  NARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
           N RER R  +VN+AF  LR LIPT P D+KLSK ETLRLA  YI+ L  VL
Sbjct: 8   NTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58


>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
          Length = 382

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 24  EDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANAR 83
           E+E+   +  G DE        R   +G ++R   +         R  R   +R  ANAR
Sbjct: 82  EEEEEEEEEEGLDE----AEGERPKKRGPKKRKMTK--------ARLERSKLRRQKANAR 129

Query: 84  ERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
           ER+R + +N A   LR ++P     +KLSKIETLRLA +YI  L  +L +G+
Sbjct: 130 ERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 181


>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
          Length = 331

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 31/56 (55%), Positives = 37/56 (66%)

Query: 76  QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
           +R   N+RER R  +VN AF  LR LIPT P D+KLSK E LRLA  YI+ L  +L
Sbjct: 188 RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLL 243


>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
          Length = 271

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 62/179 (34%), Positives = 71/179 (39%), Gaps = 30/179 (16%)

Query: 6   LRPAPPGR------------YLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGAR 53
           LRP  PG             Y  P  S  S      S SS S   P    AAR   +   
Sbjct: 18  LRPQRPGDLQLGASLYELVGYRQPPSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPA 77

Query: 54  RRAGGRRAGGGGPGG--RPGREPRQ----RHTANARERDRTNSVNTAFTALRTLIPTEPA 107
              G     G  PGG  RP  +  Q    R   N+RER R   +N A  ALR +I    A
Sbjct: 78  EPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSA 137

Query: 108 -------DRKLSKIETLRLASSYISHLGNVLL-AGEACGDGQPCHSGPAFFHAARAGSP 158
                   RKLSKI TL LA +YI  LG+ L     A G+G    +GPA      AG P
Sbjct: 138 AHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEG----AGPAAPRLLLAGLP 192


>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
          Length = 356

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 76  QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
           +R  ANARER+R + +N A   LR ++P     +KLSKIETLRLA +YI  L  +L +G+
Sbjct: 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 161

Query: 136 A 136
           +
Sbjct: 162 S 162


>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
          Length = 337

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 76  QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
           +R  ANARER+R + +N A   LR ++P     +KLSKIETLRLA +YI  L  +L  G+
Sbjct: 95  RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,632,405
Number of Sequences: 37866
Number of extensions: 745796
Number of successful extensions: 17931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 11463
Number of HSP's gapped (non-prelim): 4530
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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