Search of human proteins with 148746211

Search of human proteins with 148746211

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
         (364 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...   743   0.0  
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]   242   4e-64
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...   197   9e-51
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi...   144   1e-34
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]    144   2e-34
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]   142   6e-34
gi|157426823 NK2 homeobox 4 [Homo sapiens]                            142   6e-34
gi|31377777 NK2 homeobox 8 [Homo sapiens]                             127   1e-29
gi|4502365 NK3 homeobox 2 [Homo sapiens]                              115   6e-26
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    96   5e-20
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       96   7e-20
gi|19923352 NK3 homeobox 1 [Homo sapiens]                              93   4e-19
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]      87   2e-17
gi|70608170 H6 family homeobox 2 [Homo sapiens]                        86   4e-17
gi|4758168 distal-less homeobox 2 [Homo sapiens]                       86   7e-17
gi|122937319 even-skipped homeobox 2 [Homo sapiens]                    86   7e-17
gi|27886557 msh homeobox 2 [Homo sapiens]                              84   2e-16
gi|118582284 msh homeobox 1 [Homo sapiens]                             82   6e-16
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             82   1e-15
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  82   1e-15
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  82   1e-15
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  82   1e-15
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     82   1e-15
gi|11386181 H2.0-like homeobox [Homo sapiens]                          79   6e-15
gi|4885187 distal-less homeobox 5 [Homo sapiens]                       79   8e-15
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]                  78   1e-14
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]                   78   1e-14
gi|19923391 homeobox D3 [Homo sapiens]                                 77   2e-14
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]            77   2e-14
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        77   2e-14

>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score =  743 bits (1919), Expect = 0.0
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE 60
           MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
Sbjct: 1   MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE 60

Query: 61  EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK 120
           EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK
Sbjct: 61  EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK 120

Query: 121 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH 180
           SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH
Sbjct: 121 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH 180

Query: 181 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT 240
           LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT
Sbjct: 181 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT 240

Query: 241 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGG 300
           PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGG
Sbjct: 241 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGG 300

Query: 301 GGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG 360
           GGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG
Sbjct: 301 GGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG 360

Query: 361 IRAW 364
           IRAW
Sbjct: 361 IRAW 364


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score =  242 bits (617), Expect = 4e-64
 Identities = 174/374 (46%), Positives = 205/374 (54%), Gaps = 61/374 (16%)

Query: 2   MLPSP-VTSTPFSVKDILNLEQQHQHFHGA-HLQADLEHHFHSAPCMLAAAEGTQFSDGG 59
           M PSP +T TPFSVKDILNLEQQ +    A  L A LE     + CMLAA +   ++  G
Sbjct: 1   MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA--G 58

Query: 60  EEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQ 119
            E           L  L A  G   S   P              P+ + +       R++
Sbjct: 59  PE------AAAPGLPELRAELGRAPS---PAKCASAFPAAPAFYPRAYSDPDPAKDPRAE 109

Query: 120 KS--CQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPE 177
           K   C L+K++E   +   A+ +ERP+ R RRKPRVLFSQAQV+ELERRFKQQRYLSAPE
Sbjct: 110 KKELCALQKAVEL--EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPE 167

Query: 178 REHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPP--RRVAVPVLVRDG 235
           R+ LAS LKLTSTQVKIWFQNRRYKCKRQRQD++LEL    PPPPP  RR+AVPVLVRDG
Sbjct: 168 RDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDG 227

Query: 236 KPCVTPSAQAYGAPYSVGASAYSYNSFPAY-GYGNSAAAAAAAAAAAAAAAAYSSSYGC- 293
           KPC+  SA  Y   Y VG + Y YN++PAY GYG                AA S  Y C 
Sbjct: 228 KPCLGDSA-PYAPAYGVGLNPYGYNAYPAYPGYG---------------GAACSPGYSCT 271

Query: 294 -AYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVN--VSNLGGFGSGGSAQPLHQGTAAG 350
            AYPAG            +  QPA +AA    FVN  V +L    S G  Q         
Sbjct: 272 AAYPAG-----------PSPAQPATAAANNN-FVNFGVGDLNAVQSPGIPQ--------- 310

Query: 351 AACAQGTLQGIRAW 364
           +     TL GIRAW
Sbjct: 311 SNSGVSTLHGIRAW 324


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score =  197 bits (502), Expect = 9e-51
 Identities = 124/243 (51%), Positives = 139/243 (57%), Gaps = 53/243 (21%)

Query: 125 KKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS 184
           ++ +  +GD      SE+PK R RRKPRVLFSQAQV  LERRFKQQRYLSAPEREHLAS+
Sbjct: 27  ERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASA 86

Query: 185 LKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPS-- 242
           L+LTSTQVKIWFQNRRYKCKRQRQDKSLEL  H  P  PRRVAVPVLVRDGKPC+ P   
Sbjct: 87  LQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGH--PLTPRRVAVPVLVRDGKPCLGPGPG 144

Query: 243 AQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGG 302
           A A+ +PYS   S YS      YG                + A Y + YG  Y     G 
Sbjct: 145 APAFPSPYSAAVSPYS-----CYG--------------GYSGAPYGAGYGTCYAGAPSGP 185

Query: 303 GGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGG-SAQPLHQGTAAGAACAQGTLQGI 361
              T  A+                      GFG GG +A P  QG  A       TLQG+
Sbjct: 186 APHTPLAS---------------------AGFGHGGQNATP--QGHLA------ATLQGV 216

Query: 362 RAW 364
           RAW
Sbjct: 217 RAW 219


>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
           sapiens]
          Length = 401

 Score =  144 bits (363), Expect = 1e-34
 Identities = 130/369 (35%), Positives = 165/369 (44%), Gaps = 46/369 (12%)

Query: 1   MMLPSPVTSTPFSVKDILN-LEQQHQH--FHGAHLQADLEHHFH--SAPCMLAAAEGTQF 55
           +M  SP  +TPFSV DIL+ LE+ ++     G  L A L  +    +AP   A  +    
Sbjct: 30  IMSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG 89

Query: 56  SDGGEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYV---HTVLRDSCSEPKEHEEEPE 112
             G                S +A  G+ +  L     +      +R+S S P  +   P+
Sbjct: 90  HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPD 149

Query: 113 -----VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRS-RRKPRVLFSQAQVFELERR 166
                + R     S      +   G      ++  P P + RRK RVLFSQAQV+ELERR
Sbjct: 150 PRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERR 209

Query: 167 FKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE------------- 213
           FKQQ+YLSAPEREHLAS + LT TQVKIWFQN RYK KRQ +DK+ +             
Sbjct: 210 FKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGG 269

Query: 214 ------LGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGY 267
                     A    PRRVAVPVLV+DGKPC              GA A    S   +  
Sbjct: 270 GGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC------------QAGAPAPGAASLQGHAQ 317

Query: 268 GNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVN 327
             +   A AA AAAAA +  S   G     G   G  G S    A   A  AA  G   +
Sbjct: 318 QQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQS-PDLAHHAASPAALQGQVSS 376

Query: 328 VSNLGGFGS 336
           +S+L   GS
Sbjct: 377 LSHLNSSGS 385


>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
          Length = 371

 Score =  144 bits (362), Expect = 2e-34
 Identities = 130/368 (35%), Positives = 164/368 (44%), Gaps = 46/368 (12%)

Query: 2   MLPSPVTSTPFSVKDILN-LEQQHQH--FHGAHLQADLEHHFH--SAPCMLAAAEGTQFS 56
           M  SP  +TPFSV DIL+ LE+ ++     G  L A L  +    +AP   A  +     
Sbjct: 1   MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 60

Query: 57  DGGEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYV---HTVLRDSCSEPKEHEEEPE- 112
            G                S +A  G+ +  L     +      +R+S S P  +   P+ 
Sbjct: 61  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 120

Query: 113 ----VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRS-RRKPRVLFSQAQVFELERRF 167
               + R     S      +   G      ++  P P + RRK RVLFSQAQV+ELERRF
Sbjct: 121 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 180

Query: 168 KQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE-------------- 213
           KQQ+YLSAPEREHLAS + LT TQVKIWFQN RYK KRQ +DK+ +              
Sbjct: 181 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 240

Query: 214 -----LGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYG 268
                    A    PRRVAVPVLV+DGKPC              GA A    S   +   
Sbjct: 241 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPC------------QAGAPAPGAASLQGHAQQ 288

Query: 269 NSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNV 328
            +   A AA AAAAA +  S   G     G   G  G S    A   A  AA  G   ++
Sbjct: 289 QAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQS-PDLAHHAASPAALQGQVSSL 347

Query: 329 SNLGGFGS 336
           S+L   GS
Sbjct: 348 SHLNSSGS 355


>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
          Length = 273

 Score =  142 bits (357), Expect = 6e-34
 Identities = 111/284 (39%), Positives = 138/284 (48%), Gaps = 50/284 (17%)

Query: 8   TSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGEE------ 61
           T T FSVKDIL+L   +    G+  +   E +    P   A   G    D  +       
Sbjct: 6   TKTGFSVKDILDLPDTNDE-EGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNP 64

Query: 62  --DEEDEGEKLSYLNSLAAADG-----HGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV 114
             D  D      Y   LA+ +G     HG +   P        +DS S+  E   +    
Sbjct: 65  FYDSSDN----PYTRWLASTEGLQYSLHGLAAGAPP-------QDSSSKSPEPSADESPD 113

Query: 115 RDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLS 174
            D+           ET G    A +        +RK RVLFS+AQ +ELERRF+QQRYLS
Sbjct: 114 NDK-----------ETPGGGGDAGK--------KRKRRVLFSKAQTYELERRFRQQRYLS 154

Query: 175 APEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRD 234
           APEREHLAS ++LT TQVKIWFQN RYK KR R +K +E+    P P PRRVAVPVLVRD
Sbjct: 155 APEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEV---TPLPSPRRVAVPVLVRD 211

Query: 235 GKPCVTPSAQAYGA---PYSVGASAYSYNSFPAYGYGNSAAAAA 275
           GKPC    AQ   A      +  SAYS  S     Y    ++A+
Sbjct: 212 GKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSAS 255


>gi|157426823 NK2 homeobox 4 [Homo sapiens]
          Length = 354

 Score =  142 bits (357), Expect = 6e-34
 Identities = 92/167 (55%), Positives = 104/167 (62%), Gaps = 21/167 (12%)

Query: 129 ETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLT 188
           ++ G   AA  +  P    RRK RVLFSQAQV+ELERRFKQQ+YLSAPEREHLAS + LT
Sbjct: 174 KSLGPLHAAAAAAAP----RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLT 229

Query: 189 STQVKIWFQNRRYKCKRQRQDKSLE-------LGAHAPPPP-PRRVAVPVLVRDGKPC-- 238
            TQVKIWFQN RYK KRQ +DK+ +       LG   PPPP PRRVAVPVLV+DGKPC  
Sbjct: 230 PTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQN 289

Query: 239 --VTPSAQAYG----APYSVGASAYSYNSFPA-YGYGNSAAAAAAAA 278
              TP+    G    AP           S PA +G G   AA  AAA
Sbjct: 290 GASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAA 336



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 242 SAQAYGAP----YSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGC---- 293
           +A AY AP     S  A+        A    N+AAAAAAAAAAAAAAA Y    G     
Sbjct: 44  AAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFP 103

Query: 294 -----AYPAGGGGGGGGTSAATTAMQPACSAA--GGGPFVNVSNLGGF-GSGGSAQPLHQ 345
                +Y  GG G  G   A T  M+   +    G  P    S++  F G          
Sbjct: 104 HGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGM 163

Query: 346 GTAAGAACAQGTLQGIRA 363
           G+  G A A  +L  + A
Sbjct: 164 GSLTGIADAAKSLGPLHA 181



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 29/118 (24%)

Query: 247 GAPYSVGASAYSYNSFPAYGYGNSAAAAAAA------------AAAAAAAAAYSSSYGCA 294
           GAP  +GA   +  ++ A   G S+ AA  A            AAAAAAAAA +++    
Sbjct: 33  GAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAA---- 88

Query: 295 YPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAA 352
                       +AAT  M P  S    G   +  N GG G+ G       G   GAA
Sbjct: 89  ------------AAATYHMPPGVSQFPHGAMGSYCN-GGLGNMGELPAYTDGMRGGAA 133



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 5  SPVTSTPFSVKDILN-LEQQHQHFHGA 30
          SP  +TPFSV DIL+ +E+ ++ F GA
Sbjct: 4  SPKHTTPFSVSDILSPIEETYKKFSGA 30


>gi|31377777 NK2 homeobox 8 [Homo sapiens]
          Length = 239

 Score =  127 bits (320), Expect = 1e-29
 Identities = 87/206 (42%), Positives = 108/206 (52%), Gaps = 27/206 (13%)

Query: 103 EPKEHEEEPEVV---RDRSQKSCQLKKSLETAGDCKAAEESERPKP-----RSRRKPRVL 154
           EP+  + +P       +R       + SLET+    +   S RP         R+K RVL
Sbjct: 31  EPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGSDAEKRKKRRVL 90

Query: 155 FSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR------- 207
           FS+AQ  ELERRF+QQRYLSAPERE LAS L+LT TQVKIWFQN RYK KR R       
Sbjct: 91  FSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAES 150

Query: 208 QDKSLELGAHAPPPPPRRVAVPVLVRDGKPC---------VTPSAQAYGAPYSVGASAYS 258
            D +     HA P   RRV VPVLVRDG+PC            + +  GAP    A+A  
Sbjct: 151 PDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAP---PAAACP 207

Query: 259 YNSFPAYGYGNSAAAAAAAAAAAAAA 284
              +PA+G G++     A    A+ A
Sbjct: 208 LPGYPAFGPGSALGLFPAYQHLASPA 233


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score =  115 bits (288), Expect = 6e-26
 Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 131 AGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTST 190
           AG  +  EE   PKPR +R  R  FS AQVFELERRF  QRYLS PER  LA+SLKLT T
Sbjct: 190 AGVAEEEEEPAAPKPRKKRS-RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTET 248

Query: 191 QVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPY 250
           QVKIWFQNRRYK KR++    L   A    P  ++VAV VLVRD +    P         
Sbjct: 249 QVKIWFQNRRYKTKRRQMAADLLASA----PAAKKVAVKVLVRDDQRQYLPGEVLRPPSL 304

Query: 251 SVGASAYSYNSFPAYGYGNSAAAAAA 276
                +Y Y  +   G+  S  AAAA
Sbjct: 305 LPLQPSYYYPYYCLPGWALSTCAAAA 330


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 2/136 (1%)

Query: 148 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 207
           ++K R +FS++QVF+LE  F  +RYLS+ ER  LA+SL+LT TQVKIWFQNRR K KRQ 
Sbjct: 203 KKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL 262

Query: 208 QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGY 267
               LE  + +PP   R V VPVL  +  P    +      P+ +  +A +    P  G+
Sbjct: 263 A-AELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPP-PLLGF 320

Query: 268 GNSAAAAAAAAAAAAA 283
             + A   AA  AAA+
Sbjct: 321 SGALAYPLAAFPAAAS 336


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 95.5 bits (236), Expect = 7e-20
 Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 102 SEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKP-RVLFSQAQV 160
           S+ +E ++E E     +  S     +   A D K   ES   KP  R+K  R +FS++QV
Sbjct: 180 SDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQV 239

Query: 161 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP 220
           F+LE  F  +RYLS+ ER  LA+SL LT TQVKIWFQNRR K KRQ     LE    +  
Sbjct: 240 FQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA-AELEAANLSHA 298

Query: 221 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSV 252
              R V VP+L  +       +A A GAP  V
Sbjct: 299 AAQRIVRVPILYHENSAAEGAAAAAAGAPVPV 330



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 219 PPPPPRRVAVPVLVRD--GKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAA 276
           PPPPP     P  +++        P  +    P ++ A A             SAAAAAA
Sbjct: 20  PPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPA-------------SAAAAAA 66

Query: 277 AAAAAAAAAAYSSSYGCA 294
           AAAAAAA  A   + G A
Sbjct: 67  AAAAAAAKGALEGAAGFA 84


>gi|19923352 NK3 homeobox 1 [Homo sapiens]
          Length = 234

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 62/165 (37%), Positives = 81/165 (49%), Gaps = 27/165 (16%)

Query: 104 PKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFEL 163
           P+E E   E   +R   S  L     +    +  +  ++P+ RSR      FS  QV EL
Sbjct: 84  PEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSR----AAFSHTQVIEL 139

Query: 164 ERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSL-ELGAHAPPPP 222
           ER+F  Q+YLSAPER HLA +LKLT TQVKIWFQNRRYK KR++    L +L  H+  P 
Sbjct: 140 ERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPA 199

Query: 223 PRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGY 267
            +  A                      +S  +    YNS+P Y Y
Sbjct: 200 LKEEA----------------------FSRASLVSVYNSYPYYPY 222


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 81/227 (35%), Positives = 106/227 (46%), Gaps = 20/227 (8%)

Query: 141 ERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRR 200
           +RPK     + R  F+  Q++ LE  F++ +Y+   ER  LA  L L+ TQVK+WFQNRR
Sbjct: 98  DRPK-----RTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRR 152

Query: 201 YKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGA--SAYS 258
            K K+  Q K  EL +          +V  L+  G+    P   A   P + GA  SA  
Sbjct: 153 TKQKKD-QGKDSELRS-VVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALR 210

Query: 259 YNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACS 318
             S PA G G +A +AAAAAAAA   A  +S     +P   GG  G   A    +     
Sbjct: 211 GPSLPALGAGAAAGSAAAAAAAAPGPAGAAS----PHPPAVGGAPGPGPAGPGGLHAGAP 266

Query: 319 AAGGGPF--VNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQGIRA 363
           AAG   F     S LG   S  S+ PL   T AG+    G LQ + A
Sbjct: 267 AAGHSLFSLPVPSLLGSVASRLSSAPL---TMAGSLA--GNLQELSA 308


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 70/232 (30%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 50  AEGTQFSDGGEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGY-------VHTVLRDSCS 102
           A     S   EE+E D+G K     +    D HG     P+ +       + T      S
Sbjct: 42  ARKRSLSVSSEEEEPDDGWKAP---ACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGS 98

Query: 103 EPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEE-----SERPKPRSRRKPRVLFSQ 157
            P   E  P +    S    + ++ L        +E      +ER    +++K R +FS+
Sbjct: 99  GPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSR 158

Query: 158 AQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAH 217
           +QV++LE  F  +RYLS+ ER  LASSL+LT TQVK WFQNRR K KRQ     LE    
Sbjct: 159 SQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQ-LSAELEAANM 217

Query: 218 APPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGN 269
           A       V++P++ RD      P  ++   P  +     + ++ P Y   N
Sbjct: 218 AHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYN 269


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 66/184 (35%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
           KP+  RKPR ++S  Q+  L+RRF++ +YL+ PER  LA+SL LT TQVKIWFQNRR K 
Sbjct: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207

Query: 204 KRQRQDKSL----ELGAHAPPP---PPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA 256
           K+  +   +      GA A PP   PP  V+ P     G P         G P S G+ A
Sbjct: 208 KKMWKSGEIPSEQHPGASASPPCASPP--VSAPASWDFGVP---QRMAGGGGPGSGGSGA 262

Query: 257 YSYNSFPAYG----------YGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGT 306
            S  S P+            Y  ++ +A+   A A       +     +    GGGG   
Sbjct: 263 GSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPV 322

Query: 307 SAAT 310
           SA T
Sbjct: 323 SAGT 326



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 296 PAGGGGGGGGTSAATTAMQ--------PACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGT 347
           P+GGG G GG S++++++         P  +A     + N  +  G G GG +   H G+
Sbjct: 30  PSGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGS 89



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 268 GNSAAAAAA----AAAAAAAAAAYSSSY--GCAYPAGGGGGGGGTSAATTAMQPACSAAG 321
           GNS+++++      +     + A  SSY     +PAGGGGGGG   A   + Q   S   
Sbjct: 39  GNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLN 98

Query: 322 GGPF 325
             P+
Sbjct: 99  NVPY 102


>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
          Length = 476

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 80/259 (30%), Positives = 107/259 (41%), Gaps = 50/259 (19%)

Query: 149 RKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQ 208
           R+ R  F++ Q+  LE+ F ++ Y+S P R  LA++L L  T +K+WFQNRR K KRQR 
Sbjct: 189 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 248

Query: 209 DKS----------LELGAHA------PPPPPRRVAVPVLVRDGKPCVTPSAQAYGA---- 248
             S            +  HA      P P    V +      G      +A A GA    
Sbjct: 249 AMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAA 308

Query: 249 -------------------PYSVGASAYSYN-----SFPAYGYGNSAAAAAAAAAAAAAA 284
                              PYS      S+        PA   G ++AA+AAAAAAAAAA
Sbjct: 309 SSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAA 368

Query: 285 AAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLH 344
           AA S++   A P+GG       S  ++    A +AA      +    GG G GG      
Sbjct: 369 AASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG----- 423

Query: 345 QGTAAGAACAQGTLQGIRA 363
            G   GA    G+  G  A
Sbjct: 424 -GGGGGAGAGGGSDFGCSA 441



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 242 SAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGG 301
           SA A GAP S G++  S  S          ++ +AAAAAAAAAAA  S  G     GGGG
Sbjct: 372 SAAAAGAPPSGGSAPCSCLS--------CHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG 423

Query: 302 GGGGTSAATTAMQPACSAA 320
           GGGG + A       CSAA
Sbjct: 424 GGGGGAGAGGGSDFGCSAA 442



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 239 VTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAG 298
           V     A  +P  +GA+    N+   Y    SAA    +A+ +   + +  S G    A 
Sbjct: 118 VEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAA 177

Query: 299 GGGGGGG 305
            GG G G
Sbjct: 178 LGGSGSG 184


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 8/109 (7%)

Query: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
           K ++ RKPR  F+ +Q+  LER+F+Q++YLS  ER   +SSL LT TQVKIWFQNRR K 
Sbjct: 138 KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKA 197

Query: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTP--SAQAYGAPY 250
           KR ++ +  +L   A P  P   ++P       P  +P  +A  YGA Y
Sbjct: 198 KRLQEAELEKLKMAAKPMLPSSFSLPF------PISSPLQAASIYGASY 240


>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 59/145 (40%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
           K ++ RKPR  F+ AQ+  LER+F+Q++YLS  ER   +SSL LT TQVKIWFQNRR K 
Sbjct: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227

Query: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFP 263
           KR ++ +  +L   A P  P     P       P   P+A A  A    GAS Y      
Sbjct: 228 KRLQEAELEKLKMAAKPMLP-----PAAFGLSFPLGGPAAVAAAA----GASLYG----- 273

Query: 264 AYGYGNSAAAAAAAAAAAAAAAAYS 288
           A G    AA   A      A   YS
Sbjct: 274 ASGPFQRAALPVAPVGLYTAHVGYS 298



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 27/97 (27%)

Query: 272 AAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNL 331
           A AA   +         S++G   PAGGG G   ++AA TA        G  P V+ S L
Sbjct: 2   APAADMTSLPLGVKVEDSAFG--KPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLL 59

Query: 332 -------------------------GGFGSGGSAQPL 343
                                    G   +GGSAQPL
Sbjct: 60  PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPL 96


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193
           P+PR RR         + R  F+  Q+  LE +F+  RYLS  ER +LA SL LT TQVK
Sbjct: 149 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 208

Query: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251
           IWFQNRR K K+Q    D + ++G  AP P             G         + G+P  
Sbjct: 209 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 255

Query: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284
            G  A  + +FP+Y   N    +AA+    AAA
Sbjct: 256 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 288


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193
           P+PR RR         + R  F+  Q+  LE +F+  RYLS  ER +LA SL LT TQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230

Query: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251
           IWFQNRR K K+Q    D + ++G  AP P             G         + G+P  
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 277

Query: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284
            G  A  + +FP+Y   N    +AA+    AAA
Sbjct: 278 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 310


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193
           P+PR RR         + R  F+  Q+  LE +F+  RYLS  ER +LA SL LT TQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230

Query: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251
           IWFQNRR K K+Q    D + ++G  AP P             G         + G+P  
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 277

Query: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284
            G  A  + +FP+Y   N    +AA+    AAA
Sbjct: 278 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 310


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193
           P+PR RR         + R  F+  Q+  LE +F+  RYLS  ER +LA SL LT TQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230

Query: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251
           IWFQNRR K K+Q    D + ++G  AP P             G         + G+P  
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 277

Query: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284
            G  A  + +FP+Y   N    +AA+    AAA
Sbjct: 278 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 310


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 65/202 (32%), Positives = 86/202 (42%), Gaps = 22/202 (10%)

Query: 146 RSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKR 205
           R +R+ R  F+ AQ+ ELER F +  Y     RE LA  + LT  +V++WFQNRR K ++
Sbjct: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155

Query: 206 QRQDKSLELGA-------------------HAPPPPPRRVAVPVLVRDGKPCVTPSAQAY 246
           Q +  +    A                    A    P     P    +  P    +    
Sbjct: 156 QERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGG 215

Query: 247 GAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGT 306
           G P   GA   +    P    G   AAAAAAAAAAAAAAA +++ G    AGG G G   
Sbjct: 216 GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP 275

Query: 307 SAATTAMQPACSAAGGGPFVNV 328
                   P    + GGPF +V
Sbjct: 276 GPGPITSIP---DSLGGPFASV 294


>gi|11386181 H2.0-like homeobox [Homo sapiens]
          Length = 488

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 25/225 (11%)

Query: 146 RSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKR 205
           R R   R +FS  Q   LE+RF+ Q+Y++ P+R+ LA+ L LT  QVK+WFQNRR K + 
Sbjct: 274 RKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRH 333

Query: 206 QRQ-----DKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYN 260
            ++     DK  E G       P          DG+      +++ G   S  + + S +
Sbjct: 334 SKEAQAQKDKDKEAGEKPSGGAP--------AADGEQDERSPSRSEGEAESESSDSESLD 385

Query: 261 SFPA-----YGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQP 315
             P+      G   S        A    A   +SS G    +GGGG     S+A++    
Sbjct: 386 MAPSDTERTEGSERSLHQTTVIKAPVTGALITASSAGSGGSSGGGGNSFSFSSASSLSSS 445

Query: 316 ACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG 360
           + SA         S+LGG G      P  Q TA+ A  +    QG
Sbjct: 446 STSAG------CASSLGG-GGASELLPATQPTASSAPKSPEPAQG 483


>gi|4885187 distal-less homeobox 5 [Homo sapiens]
          Length = 289

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 20/146 (13%)

Query: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
           KP+  RKPR ++S  Q+  L+RRF++ +YL+ PER  LA+SL LT TQVKIWFQN+R K 
Sbjct: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 192

Query: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSY---- 259
           K     K ++ G   P   P          D   C +P + A   P     S   +    
Sbjct: 193 K-----KIMKNGEMPPEHSPSS-------SDPMACNSPQSPAVWEPQGSSRSLSHHPHAH 240

Query: 260 ----NSFPAYGYGNSAAAAAAAAAAA 281
               N  PA  Y  ++A+   +AA++
Sbjct: 241 PPTSNQSPASSYLENSASWYTSAASS 266


>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
          Length = 291

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 145 PRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCK 204
           P  R+KPR  FS+ Q+ ELE+RF +Q+YL++ ER  LA SLK+T  QVK WFQNRR K +
Sbjct: 163 PPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWR 222

Query: 205 RQRQDK 210
           RQ  ++
Sbjct: 223 RQTAEE 228


>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
          Length = 284

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 36/66 (54%), Positives = 49/66 (74%)

Query: 145 PRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCK 204
           P  R+KPR  FS++QV ELERRF +Q+YL++ ER  LA +L++T  QVK WFQNRR K +
Sbjct: 154 PPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWR 213

Query: 205 RQRQDK 210
           RQ  ++
Sbjct: 214 RQTAEE 219


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 118 SQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPE 177
           S+++ + K S  TAG+  + E+   P P S+R  R  ++ AQ+ ELE+ F   RYL  P 
Sbjct: 167 SRQNSKQKNSCATAGE--SCEDKSPPGPASKRV-RTAYTSAQLVELEKEFHFNRYLCRPR 223

Query: 178 REHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPP---PPRRVAVPVLVRD 234
           R  +A+ L LT  Q+KIWFQNRR K K+ ++ K +     +  P   PP   A   +   
Sbjct: 224 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYS 283

Query: 235 GKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCA 294
           G+    P   AY AP      A++ +    YG    AA  A  ++       Y++     
Sbjct: 284 GQLPPVPGL-AYDAP---SPPAFAKSQPNMYGL---AAYTAPLSSCLPQQKRYAAPEFEP 336

Query: 295 YPAGGGGGG 303
           +P    GGG
Sbjct: 337 HPMASNGGG 345


>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
          Length = 240

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 30/170 (17%)

Query: 104 PKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFEL 163
           P EH +E E   ++ + S +             +E   +   +  RKPR ++S  Q+  L
Sbjct: 85  PAEHPQELEADSEKPRLSPE------------PSERRPQAPAKKLRKPRTIYSSLQLQHL 132

Query: 164 ERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPP 223
            +RF+  +YL+ PER  LA+ L LT TQVKIWFQN+R K K+  +  S   G      P 
Sbjct: 133 NQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNS---GGQEGDFPG 189

Query: 224 RRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAA 273
           R  +V        PC  P    +  P +         + P  GYGNS  A
Sbjct: 190 RTFSV-------SPCSPPLPSLWDLPKA--------GTLPTSGYGNSFGA 224


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 64/192 (33%), Positives = 88/192 (45%), Gaps = 37/192 (19%)

Query: 104 PKEHEEEPEVVRDRSQKSCQLKKSLETA--GDCKAAEESERPKPRSR--RKPRVLFSQAQ 159
           PK  +E+ +   D+ + S    K   T   GD +     E P  R++  RK R  FS  Q
Sbjct: 184 PKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQ 243

Query: 160 VFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAP 219
           + +LER F++Q+YLS  +R  LA++L LT TQVK W+QNRR K KRQ             
Sbjct: 244 LNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ------------- 290

Query: 220 PPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAA 279
                 V + +L   G          Y A   +  S Y Y       + +   +  +  A
Sbjct: 291 ----TAVGLELLAEAGN---------YSALQRMFPSPYFY-------HPSLLGSMDSTTA 330

Query: 280 AAAAAAAYSSSY 291
           AAAAAA YSS Y
Sbjct: 331 AAAAAAMYSSMY 342


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,800,673
Number of Sequences: 37866
Number of extensions: 911874
Number of successful extensions: 15424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 355
Number of HSP's that attempted gapping in prelim test: 7840
Number of HSP's gapped (non-prelim): 3937
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.