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Search of human proteins with 148612890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148612890 serine-arginine repressor protein [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148612890 serine-arginine repressor protein [Homo sapiens] 532 e-151
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 241 4e-64
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 218 3e-57
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 214 6e-56
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 127 7e-30
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 121 7e-28
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 114 9e-26
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 95 5e-20
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 87 1e-17
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 85 6e-17
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 85 6e-17
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 82 4e-16
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 73 2e-13
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 71 8e-13
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 70 2e-12
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 69 3e-12
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 68 9e-12
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 68 9e-12
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 67 2e-11
gi|9558733 transformer-2 alpha [Homo sapiens] 66 3e-11
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 66 3e-11
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 65 5e-11
gi|52426743 cisplatin resistance-associated overexpressed protei... 64 2e-10
gi|19923485 cisplatin resistance-associated overexpressed protei... 64 2e-10
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 63 2e-10
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 63 2e-10
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 63 3e-10
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 63 3e-10
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 63 3e-10
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 62 5e-10
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 532 bits (1371), Expect = e-151
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT 120
VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT 120
Query: 121 RSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS 180
RSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS
Sbjct: 121 RSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS 180
Query: 181 RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT 240
RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT
Sbjct: 181 RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT 240
Query: 241 AKHSHFRSHSRSRSYRHKNSW 261
AKHSHFRSHSRSRSYRHKNSW
Sbjct: 241 AKHSHFRSHSRSRSYRHKNSW 261
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 241 bits (616), Expect = 4e-64
Identities = 151/276 (54%), Positives = 172/276 (62%), Gaps = 37/276 (13%)
Query: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
MSRY RPPNTSLF+RNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPS------DHRRSR 113
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE R+ S S +RRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 114 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN 173
S S R RSRS S+ N RR SYS SR PRRS +S +
Sbjct: 121 SRSYERRRSRSRSFDYNYRR------------SYSPRNSRPTGRPRRS----RSHSDNDR 164
Query: 174 FGSRGRSRSKSLQKRSKSIGKSQS-SSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYT 232
F R RS S RSKS +S+S S P+K+ + ++SRS H+ + S S Y
Sbjct: 165 FKHRNRSFS-----RSKSNSRSRSKSQPKKEMKAKSRSRS-ASHTKTRGTSKTDSKTHYK 218
Query: 233 N-------SETKVQTAKHSHFRSHSRSRSYRHKNSW 261
+ S K S RS SRSRS SW
Sbjct: 219 SGSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSW 254
Score = 37.4 bits (85), Expect = 0.013
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 95 QMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRS 154
+MK+K R + H ++R S+ +++ S R + S + R + S SQS+SRS
Sbjct: 190 EMKAKSRS--RSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSRSRS 247
Query: 155 KSLPRRSTSARQS 167
KS R TS + S
Sbjct: 248 KSRSRSWTSPKSS 260
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 218 bits (556), Expect = 3e-57
Identities = 119/184 (64%), Positives = 133/184 (72%), Gaps = 19/184 (10%)
Query: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
MSRY RPPNTSLF+RNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPS------DHRRSR 113
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE R+ S S +RRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 114 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN 173
S S R RSRS S+ N RR SYS SR PRRS S + P +
Sbjct: 121 SRSYERRRSRSRSFDYNYRR------------SYSPRNSRPTGRPRRSRSHSDNDRPNCS 168
Query: 174 FGSR 177
+ ++
Sbjct: 169 WNTQ 172
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 214 bits (545), Expect = 6e-56
Identities = 117/184 (63%), Positives = 133/184 (72%), Gaps = 20/184 (10%)
Query: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
MSRY RPPNTSLF+RNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPS------DHRRSR 113
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE R+ S S +RRSR
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 114 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN 173
S S R RSRS S+ N RRS S ++R PRRS S + P +
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYS-------------PRNRPTGRPRRSRSHSDNDRPNCS 167
Query: 174 FGSR 177
+ ++
Sbjct: 168 WNTQ 171
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 127 bits (320), Expect = 7e-30
Identities = 94/237 (39%), Positives = 131/237 (55%), Gaps = 36/237 (15%)
Query: 4 YTRPPN-----TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQF 58
Y RPP TSL + N+ T P+ LRR F +YG + DVYIP D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 59 EDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDH------RRS 112
D RDAEDA+ ++ + GR++ +Q A+ R P R P P + RRS
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR--PPDSHHSRRGP-PPRRYGGGGYGRRS 119
Query: 113 RSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRR 172
RSP +RR RSRS S R+R RS S R+S S+S+SR++S R ++ +R +R +
Sbjct: 120 RSP-RRRRRSRSRSRSRSRSRSRS-------RYSRSKSRSRTRSRSRSTSKSRSARRSKS 171
Query: 173 NFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPK 229
S RSRS RS+S +S+S P + S ++SRS +SP KSP+
Sbjct: 172 KSSSVSRSRS-----RSRSRSRSRSPPPVSKRESKSRSRS---------KSPPKSPE 214
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 121 bits (303), Expect = 7e-28
Identities = 97/265 (36%), Positives = 139/265 (52%), Gaps = 21/265 (7%)
Query: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
+L + N+ T P+ LRR F +YG + DVYIP + +T+ PRGFA+V+F D RDA+DA
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 71 LNRKWVCGRQIEIQFAQ-GDRKTPGQMKSKERHPC--------SPSDHRRSRSPSQR-RT 120
++ + GR++ +Q A+ G R P + + R S S RRSRSP +R R+
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
Query: 121 RSRSSSWGRNRRRSDSLKESRHRRFSYSQ---SKSRSKSLPRRSTSARQSRTPRRNFGSR 177
RSR S R+R RS + SR+ R YS+ S+SR P + R+SR ++ S
Sbjct: 135 RSRGPSCSRSRSRS-RYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSS 193
Query: 178 GRSRSK-SLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKS-PKGYTNSE 235
G S S+ S S+S KS SS+ + S+ S + S S++RS +S T S
Sbjct: 194 GYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP 253
Query: 236 TKVQTAKHSHFRSHSRSRSYRHKNS 260
+V K S SRSRS R S
Sbjct: 254 PRVSKRK-----SKSRSRSKRPPKS 273
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 114 bits (285), Expect = 9e-26
Identities = 92/237 (38%), Positives = 124/237 (52%), Gaps = 31/237 (13%)
Query: 1 MSRYTR-PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
MSRY R T +++ N+ +L R F YGP+ V+I R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 60 DVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSD----------- 108
D RDAEDA+ L+ K +CG ++ ++ + G + + R P P+D
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
Query: 109 ----HRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF-SYSQSKSRSKSLPR-RST 162
HR SR + R+RSRS S R RR S S SR RR S S +SRS SL R RS
Sbjct: 116 AYDCHRYSRR-RRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSA 174
Query: 163 SARQSRT----PRRNF--GSRGRSRSKSLQKRSKSIGKSQSSSPQKQTS-SGTKSRS 212
S R+SR+ R F SR RSRS+S+ + S KS+S SP++ S SG+ RS
Sbjct: 175 SLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRS 231
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 95.1 bits (235), Expect = 5e-20
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 18/171 (10%)
Query: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
M R + P + +++ N+ + +L R FG YGP+ V++ R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTP--GQMKSKERHPCSPSDHRRSRSPSQR 118
RDA DA+ L+ + +CG ++ ++ + G++++ G S R P D+RR P +R
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP--RDDYRRRSPPPRR 113
Query: 119 RT-------RSRSSSWGRNRRRSDSLKESRHRR--FSYSQSKSRSKSLPRR 160
R+ RSRS S R+RRR SL R+ + S+S+S+SRS+S R+
Sbjct: 114 RSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK 164
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 87.0 bits (214), Expect = 1e-17
Identities = 71/209 (33%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Query: 56 VQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSP 115
++F D + AL L+ + GR I + ++ K R + HRRS S
Sbjct: 151 IEFRSYSDMKRALDKLDGTEINGRNIRL------------IEDKPR-----TSHRRSYSG 193
Query: 116 SQRRTRSRSSSWGRNRR----RSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPR 171
S+ R+RSR S R+RR RS S+ +SR R S S+ +SRS+S R+S S +S+ P+
Sbjct: 194 SRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSK-PK 252
Query: 172 RNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGY 231
+ GS SRS+S + KS +S+S SP++ KS+S R S S + SP P
Sbjct: 253 SDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSR-SQSRSNSPLPVPPSK 311
Query: 232 TNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
S + S RS SRS+S S
Sbjct: 312 ARSVSPPPKRATSRSRSRSRSKSRSRSRS 340
Score = 83.6 bits (205), Expect = 2e-16
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 60/290 (20%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
++I ++ R +D++R F YG +++V + G+ +V+FED RDA+DA+Y L
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK--------NGYGFVEFEDSRDADDAVYEL 55
Query: 72 NRKWVCGRQIEIQFAQGDRK-----TPGQMKSKERHPCSPSDHRRSRSPSQR-------R 119
N K +CG ++ ++ A+G R+ + G + + R P R
Sbjct: 56 NGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVE 115
Query: 120 TRSRSSSW-----------------GRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRST 162
S SW R ++ + E R SYS K L
Sbjct: 116 NLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFR----SYSDMKRALDKLDGTEI 171
Query: 163 SARQSR--------TPRRNF-GSRGRSRS---------KSLQKRSKSIGKSQSSSPQKQT 204
+ R R + RR++ GSR RSRS +S + RS+SI KS+S S + ++
Sbjct: 172 NGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRS-RSRS 230
Query: 205 SSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
++SRS GR S S ++S KS +G + ++ RS SRSRS
Sbjct: 231 KGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRS 280
Score = 33.1 bits (74), Expect = 0.25
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 27/103 (26%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQ---RRTRSRSSSWGRN-----RRRSDSLKESR 141
RK+ + KSK + H RSRS + R+RSRS S N + +S S +SR
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSR 300
Query: 142 H-------------------RRFSYSQSKSRSKSLPRRSTSAR 165
R S S+S+SRSKS R +S+R
Sbjct: 301 SNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSR 343
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 85.1 bits (209), Expect = 6e-17
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 41/272 (15%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
+FI + A R +D+ R F YG I D+ + RGF +V+FED RDA+DA+Y L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 NRKWVCGRQIEIQFAQG-DRKTPGQMKSKERHPC-SPSDHRRSRSPSQRRTR------SR 123
+ K +C ++ I+ A+ R G+ + +R P + RR+ P + R S
Sbjct: 58 DGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS 117
Query: 124 SSSW----GRNRRRSDSLKESRHRR---------FSYSQSKSRSKSLPRRSTSARQSRT- 169
SW R+ + HR SY K+ + L + + R+ +
Sbjct: 118 RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLI 177
Query: 170 --PRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR---HSDSIARSP 224
+R+ SR RSRS++ RS S +S+S S +++ S ++SRS R S S++RSP
Sbjct: 178 EGSKRHSRSRSRSRSRT---RSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
Query: 225 C--KSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
KS K ++S +K A RS SRSRS
Sbjct: 235 VPEKSQKRGSSSRSK-SPASVDRQRSRSRSRS 265
Score = 58.5 bits (140), Expect = 6e-09
Identities = 53/164 (32%), Positives = 76/164 (46%), Gaps = 42/164 (25%)
Query: 56 VQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSP 115
V+F D ++A+ L+ K + GR+I++ ++ +RH SRS
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL------------IEGSKRH---------SRSR 187
Query: 116 SQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFG 175
S+ R+R+RSSS R+R RS S K SYS+S+SRS+S R
Sbjct: 188 SRSRSRTRSSSRSRSRSRSRSRK-------SYSRSRSRSRSRSRSK-------------- 226
Query: 176 SRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDS 219
SR SRS +K K S+S SP ++SRS R DS
Sbjct: 227 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDS 270
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 85.1 bits (209), Expect = 6e-17
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 41/272 (15%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
+FI + A R +D+ R F YG I D+ + RGF +V+FED RDA+DA+Y L
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
Query: 72 NRKWVCGRQIEIQFAQG-DRKTPGQMKSKERHPC-SPSDHRRSRSPSQRRTR------SR 123
+ K +C ++ I+ A+ R G+ + +R P + RR+ P + R S
Sbjct: 58 DGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS 117
Query: 124 SSSW----GRNRRRSDSLKESRHRR---------FSYSQSKSRSKSLPRRSTSARQSRT- 169
SW R+ + HR SY K+ + L + + R+ +
Sbjct: 118 RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLI 177
Query: 170 --PRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR---HSDSIARSP 224
+R+ SR RSRS++ RS S +S+S S +++ S ++SRS R S S++RSP
Sbjct: 178 EGSKRHSRSRSRSRSRT---RSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
Query: 225 C--KSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
KS K ++S +K A RS SRSRS
Sbjct: 235 VPEKSQKRGSSSRSK-SPASVDRQRSRSRSRS 265
Score = 58.5 bits (140), Expect = 6e-09
Identities = 53/164 (32%), Positives = 76/164 (46%), Gaps = 42/164 (25%)
Query: 56 VQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSP 115
V+F D ++A+ L+ K + GR+I++ ++ +RH SRS
Sbjct: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL------------IEGSKRH---------SRSR 187
Query: 116 SQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFG 175
S+ R+R+RSSS R+R RS S K SYS+S+SRS+S R
Sbjct: 188 SRSRSRTRSSSRSRSRSRSRSRK-------SYSRSRSRSRSRSRSK-------------- 226
Query: 176 SRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDS 219
SR SRS +K K S+S SP ++SRS R DS
Sbjct: 227 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDS 270
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 82.4 bits (202), Expect = 4e-16
Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 43/276 (15%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
++I ++ R D+ R F YG I++V + G+ +V+F+D+RDA+DA+Y L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK--------NGYGFVEFDDLRDADDAVYEL 55
Query: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTR------SRSS 125
N K +CG ++ ++ A+G R+ + + S + P++ R S
Sbjct: 56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRC 115
Query: 126 SW----GRNRRRSDSLKESRHRR---------FSYSQSKSRSKSLPRRSTSARQSR---- 168
SW R+ + H+ SYS K + L + R+ R
Sbjct: 116 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
Query: 169 ----TPRRNFG-----SRGRSRSK-SLQKRSKS-IGKSQSSSPQKQTSSGTKSRSHGRHS 217
RR++ SR RSRS+ S + RS+S KS S + ++ SG++SRS R S
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR-S 234
Query: 218 DSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSR 253
S +RS K K + S+ K ++ HS +S S+S+
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSK 270
Score = 77.4 bits (189), Expect = 1e-14
Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 3 RYTRPPNTS--LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
+Y P T L + N++ +DL+ + G + D + R + ++F
Sbjct: 95 KYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA----DAHKGR-KNEGVIEFVS 149
Query: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT 120
D + AL L+ V GR+I + PG + + RSRS R++
Sbjct: 150 YSDMKRALEKLDGTEVNGRKIRLV-----EDKPGSRRRRSYSRSRSHSRSRSRSRHSRKS 204
Query: 121 RSRS----SSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFG- 175
RSRS SS ++R RS S SR + S SQS+SRSK RS S +SR+ + G
Sbjct: 205 RSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGK 264
Query: 176 SRGRSRSKSLQK--RSKSIGKSQSSSPQKQTS-SGTKSRSHGRHSDSIARSPCKSPKGYT 232
SR +S+ ++ +K + ++GK +S SP + S S ++SRS R + R +
Sbjct: 265 SRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQE 324
Query: 233 NSETKVQTAKHSHFRSHSRSRS 254
S + ++ S S SRSRS
Sbjct: 325 KSLRQSRSRSRSKGGSRSRSRS 346
Score = 68.2 bits (165), Expect = 7e-12
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 91 KTPGQMKSKERHPCSPSDHR------------RSRSPSQRRTRSRSSSWGRNRRRSDSLK 138
++P + KSK + + R RS+ S R++RSRS S G +R RS S
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRS 348
Query: 139 ESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSS 198
+S+ +R +S+ S+S RS S +S R+ R S +K+ + +SQS
Sbjct: 349 KSKDKRKGRKRSREESRS---RSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSR 405
Query: 199 SPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHS----HFRSHSRSRS 254
SP + S K R H + S +S TN ET+ ++ +S + S SRSRS
Sbjct: 406 SPSRSVS---KEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRS 462
Score = 65.9 bits (159), Expect = 3e-11
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 16/195 (8%)
Query: 79 RQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLK 138
R E + + R + + +S+E+ RS+ S+ R+RSRS S + + R S +
Sbjct: 303 RSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSRE 362
Query: 139 ESRHRRFSYSQSK-------------SRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSL 185
ESR R S S+S+ SK + T QSR+P R+ S+ R +KS
Sbjct: 363 ESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSV-SKEREHAKSE 421
Query: 186 QKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSH 245
+ + G+S+++ ++T S +SRS+ + ++ K + + ++ ++ S
Sbjct: 422 SSQREGRGESENAGTNQETRS--RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSA 479
Query: 246 FRSHSRSRSYRHKNS 260
RS SRSRS H S
Sbjct: 480 SRSPSRSRSRSHSRS 494
Score = 60.1 bits (144), Expect = 2e-09
Identities = 62/196 (31%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 97 KSKERHPC-SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKE---------------- 139
KS+ R S S +SRSPS+ ++RSRS S G++R +S E
Sbjct: 231 KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS 290
Query: 140 -SRHRRFSYSQSKSRSKSLPRRSTSARQSRTPR--------RNFGSR----------GRS 180
SRH+ S+SKSRS+S RR ++ R R SR RS
Sbjct: 291 PSRHK----SKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRS 346
Query: 181 RSKSLQKR-SKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTN-SETKV 238
RSKS KR + + +S S + S +SR G DS A S K K T+ S+++
Sbjct: 347 RSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRS 406
Query: 239 QTAKHSHFRSHSRSRS 254
+ S R H++S S
Sbjct: 407 PSRSVSKEREHAKSES 422
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 73.2 bits (178), Expect = 2e-13
Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 26/171 (15%)
Query: 98 SKERH------PCSPSDHRRSRSPSQRRT--RSRSSSWGRNRRRSDSLKESRHRRFSYSQ 149
SKER P DHRRSRSPS+ R +SRSSS R+ RRS S + R RR S S
Sbjct: 480 SKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSP 539
Query: 150 SKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTK 209
+K R +S R + R+ R R R R R +S K + ++Q+ S ++
Sbjct: 540 NKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERE----------RRQSRSSSE 589
Query: 210 SRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
R H R +RSP K GY S + + + +H RS + S+ H S
Sbjct: 590 ERDHSR-----SRSPNKQ-SGY--SRPRASSKEKAHSRSRTPSKEGNHSQS 632
Score = 68.2 bits (165), Expect = 7e-12
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 98 SKERHPCSPSDHRRSRSPSQRRTR--SRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSK 155
SKER DHRRSRSPS+ R R SRS + R+R +S S E R R S S SK R +
Sbjct: 516 SKER------DHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDR 569
Query: 156 SLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR 215
R + R+ R R + R SRS+S K+S + ++SS +K S G
Sbjct: 570 RRWRSPSKERERRQSRSSSEERDHSRSRSPNKQS-GYSRPRASSKEKAHSRSRTPSKEGN 628
Query: 216 HSDSIARS----PCKS--PKGYTNSETKVQTAKHSHFRSHSRSRSY 255
HS S S P +S P+ + +T+ S R+ S++ S+
Sbjct: 629 HSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSH 674
Score = 67.8 bits (164), Expect = 9e-12
Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 86 AQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRS--RSSSWGRNRRRSDSLKESRHR 143
+Q + G+ +++ R P H SR+PS+ R+ S RSSS R+ R S S ++ R
Sbjct: 330 SQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGR 389
Query: 144 RFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQK- 202
S S +K R S R AR R + +R RSRS+S K S+S SP K
Sbjct: 390 SQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDC---SRSRSPYKA 446
Query: 203 ----QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
++ S K+R H R +RSP K+ + + S + + HS S S+ R +R
Sbjct: 447 RDRSRSRSPNKARDHSR-----SRSPNKA-RDRSRSRSPSKERDHSQLGSPSKERDHRRS 500
Query: 259 NS 260
S
Sbjct: 501 RS 502
Score = 67.8 bits (164), Expect = 9e-12
Identities = 59/161 (36%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRS---DSLKESRHRRFSYSQSKSR 153
+S+ R P DH RSRSP++ R RSRS S + R S KE HRR S S SK R
Sbjct: 449 RSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRR-SRSPSKER 507
Query: 154 SKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSH 213
R S+ R R R R R +S+S +K +SQS SP ++ +SRS
Sbjct: 508 QCRQSRSSSKERDHRRSRSPSKERQRRQSRS---PNKERDRSQSRSPSEEREH-RQSRSP 563
Query: 214 GRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
+ D R +SP + + Q+ S R HSRSRS
Sbjct: 564 SKERD---RRRWRSP---SKERERRQSRSSSEERDHSRSRS 598
Score = 66.6 bits (161), Expect = 2e-11
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSS--WGRNRRRSDSLKESRHRRFSY 147
RK G +S+ P DH RSRSP++ R RSRS S R+R RS S ++R S
Sbjct: 384 RKESG--RSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSR 441
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKR---------SKSIGKSQSS 198
S K+R +S R AR R +R RSRS+S K SK +S
Sbjct: 442 SPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSR 501
Query: 199 SPQK-----QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSR 253
SP K Q+ S +K R H R + + + Q+ S R H +SR
Sbjct: 502 SPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSR 561
Query: 254 S 254
S
Sbjct: 562 S 562
Score = 62.0 bits (149), Expect = 5e-10
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 16/144 (11%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRS--RSSSWGRNRRRSDSLKESRHRRFSYSQSKSRS 154
+S+ R P +HR+SRSPS+ R R RS S R RR+S S E R S S +K
Sbjct: 545 RSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSG 604
Query: 155 KSLPRRSTSAR---QSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQ----KQTSSG 207
S PR S+ + +SRTP + G+ +SR+ SK SQS+ P+ K++ +
Sbjct: 605 YSRPRASSKEKAHSRSRTPSKE-GNHSQSRTS-----SKESDPSQSTVPRSPDWKRSPTR 658
Query: 208 TKSRSHGR-HSDSIARSPCKSPKG 230
T S S R S + + SP P G
Sbjct: 659 TSSLSQNRTPSKTSSHSPSTFPSG 682
Score = 60.8 bits (146), Expect = 1e-09
Identities = 65/174 (37%), Positives = 81/174 (46%), Gaps = 40/174 (22%)
Query: 85 FAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSR--SSSWGRN--RRRSDSLKES 140
+ Q ++ Q S+ R P RRSRS SQ+RT SR S SW RN R RS + K
Sbjct: 269 YNQASTRSRPQSHSQSRSP------RRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGI 322
Query: 141 RHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSP 200
+ +SQS+S SK S QSRTPRR GRS + S R+ S +S S S
Sbjct: 323 LSQMGRHSQSRSHSKG-----KSQNQSRTPRR-----GRSHNWS---RNPSKERSHSHS- 368
Query: 201 QKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
S +K R H R S S + +S G N + R HSRSRS
Sbjct: 369 ----RSSSKERDH-RGSSSPRKESGRSQSGSPNKQ-----------RDHSRSRS 406
Score = 57.4 bits (137), Expect = 1e-08
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 95 QMKSKERHPCSPSDHRRSRSPSQRR--TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKS 152
+ + + R P D +SRSPS+ R +SRS S R+RRR S + R RR S S S+
Sbjct: 531 RQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEE 590
Query: 153 RSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
R S R PR + + SRS++ K +S++SS + S T R
Sbjct: 591 RDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNH-SQSRTSSKESDPSQSTVPR- 648
Query: 213 HGRHSDSIARSPCKSPKGYTNSETKVQTAKHS 244
S RSP ++ + + T +T+ HS
Sbjct: 649 ----SPDWKRSPTRT-SSLSQNRTPSKTSSHS 675
Score = 56.6 bits (135), Expect = 2e-08
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 23/192 (11%)
Query: 78 GRQIEIQFAQGDRK--TPGQMKSKERHPC-SPSDHRRSRSPSQRRTRSRSSSWG----RN 130
GR E+ K TP + SKE+ SPS R+ +S Q SR S+ +
Sbjct: 205 GRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSS 264
Query: 131 RRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSK 190
R +S + +R R S+SQS+S PRRS S Q RT SR RS S KR+
Sbjct: 265 RVKSYNQASTRSRPQSHSQSRS-----PRRSRSGSQKRTH-----SRVRSHS---WKRNH 311
Query: 191 SIGKSQSSSP-QKQTSSGTKSRSHGR-HSDSIARSPCKSPKGYTNSETKVQTAKHSHFRS 248
S +S++ Q ++SRSH + S + +R+P + + + S + HSH RS
Sbjct: 312 SRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRG-RSHNWSRNPSKERSHSHSRS 370
Query: 249 HSRSRSYRHKNS 260
S+ R +R +S
Sbjct: 371 SSKERDHRGSSS 382
Score = 56.6 bits (135), Expect = 2e-08
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRT--RSRSSSWGRNRRRSDSLKESRHRRFSY 147
R G + RH S S H + +S +Q RT R RS +W RN S+ R S+
Sbjct: 317 RTRKGILSQMGRHSQSRS-HSKGKSQNQSRTPRRGRSHNWSRN--------PSKER--SH 365
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKR-SKSIGKSQSSSPQKQTSS 206
S S+S SK R +S+ + + R GS + R S + +K+ +S+S SP K
Sbjct: 366 SHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYK-ARD 424
Query: 207 GTKSRSHGRHSD-SIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
++SRS + D S +RSP K+ + + S + + HS RS +++R S
Sbjct: 425 RSRSRSPNKARDCSRSRSPYKA-RDRSRSRSPNKARDHSRSRSPNKARDRSRSRS 478
Score = 53.5 bits (127), Expect = 2e-07
Identities = 67/211 (31%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 91 KTPGQM--KSKERHPCSPSDHRRSRSPSQRRTRSR--SSSWGRNRRRSDSLKE----SRH 142
K+ GQM S+E+ R +S +Q TRSR S S R+ RRS S + SR
Sbjct: 243 KSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRV 302
Query: 143 RRFSYSQSKSRSKSLPR-----------------RSTSARQSRTPRRNFG---------- 175
R S+ ++ SR++S R + S QSRTPRR
Sbjct: 303 RSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKE 362
Query: 176 ---SRGRSRSKSLQKRS-----KSIGKSQSSSPQKQTSSGTKSRSHGRHSD-SIARSPCK 226
S RS SK R K G+SQS SP KQ ++SRS + D S +RSP K
Sbjct: 363 RSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDH-SRSRSPNKARDRSRSRSPYK 421
Query: 227 S-PKGYTNSETKVQTAKHSH--FRSHSRSRS 254
+ + + S K + S +++ RSRS
Sbjct: 422 ARDRSRSRSPNKARDCSRSRSPYKARDRSRS 452
Score = 50.8 bits (120), Expect = 1e-06
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 92 TPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGR----NRRRSDSLKES------- 140
TPG++++ H P R R+P+ ++ SR S+GR NR RSDS +
Sbjct: 141 TPGRIRT---HGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYR 197
Query: 141 --------RHRRFSYSQSKSRSKS---LPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRS 189
R + + S ++ ++ +P + S S + R S G+ + R
Sbjct: 198 PPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQ---MIIPSRE 254
Query: 190 KSIGKSQSSSPQKQ-TSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRS 248
KS ++ SS K + T+SR S S +RSP +S G + T + HS R+
Sbjct: 255 KSYSPTEMSSRVKSYNQASTRSRP---QSHSQSRSPRRSRSG-SQKRTHSRVRSHSWKRN 310
Query: 249 HSRSRSYRHK 258
HSR+RS K
Sbjct: 311 HSRARSRTRK 320
Score = 30.8 bits (68), Expect = 1.2
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 107 SDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRR-----------FSYSQSKSRSK 155
S +RS PS S SS + + SLK ++ S + S S
Sbjct: 2 SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61
Query: 156 SLPRRSTSARQSRTPRRNFGSRGRSRSK-----SLQKRSKSIGKSQSSSPQKQTSSGTKS 210
S +STS +++ + R + SR RS+++ S R+ K+ ++ + ++
Sbjct: 62 SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRG 121
Query: 211 RSHGRH-SDSIARSPCKS------------PKGYTNSETKVQTAKHSHFRSHSRSRSYRH 257
R+ GR S S RSP ++ P + T K S +S+ R R+
Sbjct: 122 RTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNR 181
Query: 258 KNS 260
+ S
Sbjct: 182 ERS 184
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 71.2 bits (173), Expect = 8e-13
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 25/177 (14%)
Query: 91 KTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHR-RFSYSQ 149
+TP + +S+ R P RSR+P++RR+R+RS R+R RS + + R R R +
Sbjct: 597 RTPTRRRSRSRTPARRG-RSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 150 SKSRSKSLPRRSTSARQSRTPRRNFG--------SRGRSRSKSLQK---RSKSI---GKS 195
+SRS++ RR S +SRTP R G RGRSRS++ ++ RS+S+ G+S
Sbjct: 656 GRSRSRTPARRGRS--RSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRS 713
Query: 196 QSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRS 252
S +PQ++ SG+ S + S RS +NS +++ ++ S RS S S
Sbjct: 714 HSRTPQRRGRSGSSSERKNKSRTSQRRS-------RSNSSPEMKKSRISSRRSRSLS 763
Score = 68.6 bits (166), Expect = 5e-12
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 91 KTPGQM-KSKERHPCSPSDHRRSRSPSQRRTRSRSSSW-GRNRRRSDSLKESRHRRFSYS 148
+TP + +S+ R P RSR+P++RR+RSR+ + GR+R R+ + + SR R S
Sbjct: 576 RTPARRGRSRSRTPARRRS--RSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTR--SPV 631
Query: 149 QSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGT 208
+ +SRS+S RRS +R SRTP R RGRSRS++ +R G+S+S +P ++ S +
Sbjct: 632 RRRSRSRSPARRSGRSR-SRTPAR----RGRSRSRTPARR----GRSRSRTPARR-SGRS 681
Query: 209 KSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
+SR+ R S +R+P +G + S + V+ RSHSR+ R ++
Sbjct: 682 RSRTPARRGRSRSRTP---RRGRSRSRSLVRRG-----RSHSRTPQRRGRS 724
Score = 63.9 bits (154), Expect = 1e-10
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 88 GDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSS-WGRNR---RRSDSLKESRHR 143
G ++P K +P+ SRS S + RSRS+ WGR+R RR S R
Sbjct: 482 GRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP- 540
Query: 144 RFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQ 203
S+SR+ RS SAR+ R+ R+ +RGRSRS++ +R G+S+S +P ++
Sbjct: 541 ----GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARR----GRSRSRTPARR 592
Query: 204 TS-SGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
S S T +R R +R+P + + + + + ++ S R SRSRS
Sbjct: 593 RSRSRTPTRRRSR-----SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRS 639
Score = 62.4 bits (150), Expect = 4e-10
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 36/193 (18%)
Query: 97 KSKERHPCSPSDHRRSRSPS------------QRRTRSRSSSWGRNRRRSDSLKESRHRR 144
+S +R S S RR RS S QRR RSRS+ GR+ RS + + R
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 145 FSYSQSKSRSKSLPRRSTSAR-------QSRTPRRNFGSRGRSRSKS-LQKRSKSIG--- 193
+ +SRS++ RR + +R +SRTP R RGRSRS++ ++RS++
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR----RGRSRSRTPARRRSRTRSPVR 632
Query: 194 -KSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRS---- 248
+S+S SP ++ S ++SR+ R S +R+P + +G + S T + + S R+
Sbjct: 633 RRSRSRSPARR-SGRSRSRTPARRGRSRSRTPAR--RGRSRSRTPARRSGRSRSRTPARR 689
Query: 249 -HSRSRSYRHKNS 260
SRSR+ R S
Sbjct: 690 GRSRSRTPRRGRS 702
Score = 58.5 bits (140), Expect = 6e-09
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 91 KTPGQM-KSKERHPCSPSDHRRSRSPSQR-RTRSRSSSWGRNRRRS--------DSLKES 140
+TP + +S+ R P S RSR+P++R R+RSR+ GR+R RS +
Sbjct: 661 RTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQR 720
Query: 141 RHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRG-------RSRSKSLQKRSKSIG 193
R R S S+ K++S++ RRS S + SR RS++KS +S+
Sbjct: 721 RGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLS 780
Query: 194 KSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRS 252
S QK + +SRS + +R+P + + ++ K Q +K +SHS S
Sbjct: 781 GSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPK-QKSKTPSRQSHSSS 838
Score = 58.2 bits (139), Expect = 7e-09
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 25/197 (12%)
Query: 73 RKWVCGRQIEIQFAQGDRKTPGQMKSK--ERHPCSPSDHR---RSRSPSQR-RTRSRSSS 126
++W R + + + PG +S+ +R S S R SRSP+ R R+RSR+ +
Sbjct: 520 QRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPA 579
Query: 127 W-GRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGS-----RGRS 180
GR+R R+ + + SR R + ++ +SRS++ RR S +SRTP R R RS
Sbjct: 580 RRGRSRSRTPARRRSRSR--TPTRRRSRSRTPARRGRS--RSRTPARRRSRTRSPVRRRS 635
Query: 181 RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT 240
RS+S +RS G+S+S +P ++ S +SR+ R S +R+P + G + S T +
Sbjct: 636 RSRSPARRS---GRSRSRTPARRGRS--RSRTPARRGRSRSRTPARR-SGRSRSRTPARR 689
Query: 241 AK---HSHFRSHSRSRS 254
+ + R SRSRS
Sbjct: 690 GRSRSRTPRRGRSRSRS 706
Score = 58.2 bits (139), Expect = 7e-09
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRS--PSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSY 147
R +P K + R SP+ HRRSRS P R RSRS + +RRRS S RR
Sbjct: 1855 RTSPAPWK-RSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRR--- 1910
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKS------IGKSQSSSP- 200
S+SR+ + RR + +R RR R RSR+ + ++RS+S +S+S +P
Sbjct: 1911 --SRSRASPVSRRRSRSRTPPVTRR----RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPP 1964
Query: 201 ------QKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRS 252
+ +TS T+ RS R S R T ++ +T+ + RS SR+
Sbjct: 1965 VTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRT 2022
Score = 57.4 bits (137), Expect = 1e-08
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 87 QGDRKTPGQMKSKERHP-------CSPSDHRRSRSPSQRRTRSRSSS-WGRNR-----RR 133
+G R +P + K+K R P SP R++R RR+RS SSS R+R RR
Sbjct: 1670 RGSRSSP-EPKTKSRTPPRRRSSRSSPELTRKARL--SRRSRSASSSPETRSRTPPRHRR 1726
Query: 134 SDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSI- 192
S S+ S S + RS S PR T++R+ R+P RSRS+S ++++++
Sbjct: 1727 SPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTR 1786
Query: 193 -----GKSQSSSPQKQTSSGTKSRSHGRHSDS--IARSPCKSPKGYTNSET---KVQTAK 242
G SQS+S ++Q S + R S +RSP + T+S + +T
Sbjct: 1787 RRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPP 1846
Query: 243 HSHFRSHSRSRSYRHKNS 260
S RS SR+ K S
Sbjct: 1847 TSRKRSRSRTSPAPWKRS 1864
Score = 55.1 bits (131), Expect = 6e-08
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 90 RKTPGQMKSKER-HPCSPSDHRRSRSPSQRRTRSRSSSW---GRNRRRSDSLK-ESRHRR 144
R+ SK R H + D S +PS+R RSRS + GR+R R+ + + SR R
Sbjct: 451 REISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRS 510
Query: 145 FSYSQSKSRSKSLPRRSTSAR-QSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQ 203
+ +S+S + RS R +SR+P+R SR R+ + + RS G+S S SP
Sbjct: 511 PQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPA-- 568
Query: 204 TSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
T ++SR+ R S +R+P + S ++ T + RS SR+ + R ++
Sbjct: 569 TRGRSRSRTPARRGRSRSRTPARR-----RSRSRTPTRR----RSRSRTPARRGRS 615
Score = 55.1 bits (131), Expect = 6e-08
Identities = 58/193 (30%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 86 AQGDRKTPGQMKSKERHPCSPSDHRRS----------RSPSQRRTRSRSSSWGRNRRRSD 135
A+ R++ S E +P HRRS +S S RR RS SS + R
Sbjct: 1701 ARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRG 1760
Query: 136 SLKESRHRRFSYSQSKSR---SKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSI 192
+ R S+S+SR +++ RR S T RR SR RSR + +R +
Sbjct: 1761 RSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSR---VTRRRRGG 1817
Query: 193 GKSQSSSPQKQTSSGTKSRSHGRHS----DSIARSPCK-SPKGYTNSETKVQTAKHSHFR 247
S SP +Q SS T SR S S RS + SP + S ++ A H R
Sbjct: 1818 SGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSR 1877
Query: 248 SHSRSRSYRHKNS 260
S + S R S
Sbjct: 1878 SRTPLISRRRSRS 1890
Score = 53.9 bits (128), Expect = 1e-07
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 91 KTPGQM-KSKERHPCSPSDHRRSRSPSQRRTRSRS---SSWGRNRRRSDSLKESRHRRFS 146
+TP + +S+ R P RSR+P++R RSRS + GR+R R+ SR R
Sbjct: 650 RTPARRGRSRSRTPARRG-RSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSL- 707
Query: 147 YSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSS 206
+ +S S++ RR S S ++ S+ RSRS S + KS S+ S S
Sbjct: 708 VRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRS 767
Query: 207 GTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
KSR R S S SPC K T + +S + R R +S
Sbjct: 768 KAKSRLSLRRSLS-GSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSS 820
Score = 53.1 bits (126), Expect = 2e-07
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 30/151 (19%)
Query: 91 KTPGQMKSKER--------HPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKES-- 140
+TP + +S+ R H +P RS S S+R+ +SR+S S +K+S
Sbjct: 695 RTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRI 754
Query: 141 ---RHRRFSYSQSKSRSKSLPRRSTSA------RQSRTPRRNFGSRGRSRSKSLQKRSKS 191
R R S +SK++S+ RRS S ++S+TP R RSRS S Q ++KS
Sbjct: 755 SSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPR------RSRSGSSQPKAKS 808
Query: 192 -----IGKSQSSSPQKQTSSGTKSRSHGRHS 217
+S SS P KQ S +SH S
Sbjct: 809 RTPPRRSRSSSSPPPKQKSKTPSRQSHSSSS 839
Score = 52.0 bits (123), Expect = 5e-07
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 102 HPCSPSDHRRSRSPSQRR-TRSRSSSWGRNRRRSDS----LKESRHRR--FSYSQSKSRS 154
H SP+ SR+ S+RR RSR+ R R RS + K SR R ++ +S+SR+
Sbjct: 1821 HSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRT 1880
Query: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQS-SSPQKQTSSGTKSRSH 213
+ RR + +R S RR R RSR+ ++RS+S S + +T T+ RS
Sbjct: 1881 PLISRRRSRSRTSPVSRR----RSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSR 1936
Query: 214 GRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
R + RS ++P T ++ +T + RS SR+ + S
Sbjct: 1937 SRTPTTRRRSRSRTPP-VTRRRSRSRTPPVTRRRSRSRTSPITRRRS 1982
Score = 51.2 bits (121), Expect = 9e-07
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 22/170 (12%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156
+S+ R P RSR+P R RSRS + RRRS S RR +S+SR+
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR----RSRSRTSP 2000
Query: 157 LPRRSTSARQSRTPRRNFGSRGRSRS-KSLQKRSKS------IGKSQSSSP---QKQTSS 206
+ RR + +R S RR R RSR+ ++++RS+S +S+S SP ++++ S
Sbjct: 2001 VTRRRSRSRTSPVTRR----RSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRS 2056
Query: 207 GTKSRSHGRHSDSIARSP--CKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
T + G+ S+ RSP + +S + ++A R+HS SR+
Sbjct: 2057 RTPRTARGKR--SLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRT 2104
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 24/184 (13%)
Query: 92 TPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF-SYSQS 150
+P K SP + + +P R S SS +NR + ++ H S
Sbjct: 424 SPQPTKVSRHASSSPESPKPAPAPGSHREIS-SSPTSKNRSHGRAKRDKSHSHTPSRRMG 482
Query: 151 KSRSKSLPRRSTSARQSRTPRRNFGSRGRS----RSKSLQKRSKSIG---KSQSSSPQK- 202
+SRS + +R S +SRTP + SR RS RS+S Q+ +S + +S SPQ+
Sbjct: 483 RSRSPATAKRGRS--RSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 540
Query: 203 ------------QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHS 250
++ S + RSH R + RS ++P S ++ + S R+ +
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Query: 251 RSRS 254
R RS
Sbjct: 601 RRRS 604
Score = 49.7 bits (117), Expect = 3e-06
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
Query: 87 QGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFS 146
+G +TP + + R SP+ +RSRS + T RS R+R S + SR R
Sbjct: 1839 RGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRS----RSRTPLISRRRSRSRTSP 1894
Query: 147 YSQSKSRSKSLPRRSTSARQSRT-PRRNFGSRGRSRSKS---LQKRSKSIGKSQSSSPQK 202
S+ +SRS+ TS + R+ R + SR RSRS++ ++RS+S + +
Sbjct: 1895 VSRRRSRSR------TSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRS 1948
Query: 203 QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
+T T+ RS R R T ++ +T+ + RS SR+ + S
Sbjct: 1949 RTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRS 2006
Score = 47.8 bits (112), Expect = 1e-05
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 67 ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSS 126
A + ++ +V G + Q + K P K S RS +P Q++ + +
Sbjct: 137 AAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKD- 195
Query: 127 WGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQ 186
RRS+S R R+ S + K RS+S ++ + +R + R RS+S
Sbjct: 196 ---RGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTT 252
Query: 187 KRSKSIGKSQSSSPQKQTSSGTKSRSHGR------HSDSIA-RSP 224
KS +S+S +SS T SRS R H+ ++A RSP
Sbjct: 253 PAPKSRRAHRSTSADSASSSDT-SRSRSRSAAAKTHTTALAGRSP 296
Score = 47.8 bits (112), Expect = 1e-05
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
DR P KS E+ P S S SP + +SS + + + + HR S S
Sbjct: 402 DRSPP---KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPA--PGSHREISSS 456
Query: 149 Q-SKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSG 207
SK+RS +R S S TP R G RSRS + KR G+S+S +P K+ S
Sbjct: 457 PTSKNRSHGRAKRDKS--HSHTPSRRMG---RSRSPATAKR----GRSRSRTPTKRGHSR 507
Query: 208 TKSRS--HGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
++S R + RS +G + S + ++ + + RSRS R S
Sbjct: 508 SRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 562
Score = 47.0 bits (110), Expect = 2e-05
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
D K + + SP ++R+P ++R+RS SS ++ R L R R S
Sbjct: 1546 DVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSR---LSPRRSRSGSSP 1602
Query: 149 QSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGT 208
+ K + ++ PR + + S P+ ++L +RS+S S+ P + SS T
Sbjct: 1603 EVKDKPRAAPRAQSGSDSSPEPK-------APAPRALPRRSRSGSSSKGRGPSPEGSSST 1655
Query: 209 KSR-SHGRHSDSIARSPCKSPKGYTNSET 236
+S H S + R SP+ T S T
Sbjct: 1656 ESSPEHPPKSRTARRGSRSSPEPKTKSRT 1684
Score = 45.8 bits (107), Expect = 4e-05
Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 80 QIEIQFAQGDRKTPGQMKS-KERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLK 138
Q E+ + TP ++ +E P P+ +R R S + S SSS + S S
Sbjct: 2571 QPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSS 2630
Query: 139 ESRHRRFSYSQSKSRSKS----------LPRRST------SARQSRTPRRNFGSRGRSRS 182
S S S S S S S LP+ ++ R+SR+PR+ S SRS
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRS 2690
Query: 183 KSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNS 234
S + Q S +Q+SS + G+ DS RSP + T S
Sbjct: 2691 LSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDS--RSPSHKRRRETPS 2740
Score = 45.1 bits (105), Expect = 6e-05
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 78 GRQIEIQFAQGDRKTPGQMK-------SKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRN 130
GR+ E + +RK + K SK+R SP+ + +S ++R RSRS++
Sbjct: 197 GRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPK 256
Query: 131 RRRSDSLKESRHRRFSYSQSKSRSKSLPRRS-TSARQSRTPRRNFGSRGR--------SR 181
RR+ S S S+SRS+S ++ T+A R+P G RG
Sbjct: 257 SRRAHR-STSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGT 315
Query: 182 SKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARS 223
+ + + S Q SSP + K +S R S S RS
Sbjct: 316 TSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERS 357
Score = 44.7 bits (104), Expect = 8e-05
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 4/161 (2%)
Query: 98 SKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSL 157
S E P S + R SRS + +T+SR+ R+ R S L +R R S + S
Sbjct: 1658 SPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPEL--TRKARLSRRSRSASSSPE 1715
Query: 158 PRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHS 217
R T R R+P + S ++RS S +++++S ++ S K R R
Sbjct: 1716 TRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTS-RRGRSPSPKPRGLQRSR 1774
Query: 218 DSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
R ++ + S + T++ RS SRSR R +
Sbjct: 1775 SRSRREKTRTTRRRDRSGSSQSTSRRRQ-RSRSRSRVTRRR 1814
Score = 44.3 bits (103), Expect = 1e-04
Identities = 60/177 (33%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 97 KSKERHPCSPSDH----RRSRSPSQR--------RTRSRSS-SWGRNRRRSDSLKESRHR 143
K+ R SPS +RSRS S+R R RS SS S R R+RS S R
Sbjct: 1754 KTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRR 1813
Query: 144 RFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRS-KSLQKRSKSIGKSQSSSPQK 202
R S SRS P R S+R S R RGRSR+ + +KRS+S S +P K
Sbjct: 1814 RRGGSGYHSRS---PARQESSRTSSRRR-----RGRSRTPPTSRKRSRS---RTSPAPWK 1862
Query: 203 QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
++ S +H R S +R+P S + ++ +T+ S RS SR+ R ++
Sbjct: 1863 RSRSRASPATHRR---SRSRTPLISRR-----RSRSRTSPVSRRRSRSRTSVTRRRS 1911
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 115 PSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRR-------------- 160
P++ R S SSS + S S S S S S SLP +
Sbjct: 2526 PAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPA 2585
Query: 161 -STSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDS 219
+ R+ R P R R RS S S S S SSS +SS + S S S S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKR-RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Query: 220 IARSPCKSPKG 230
+ SP + G
Sbjct: 2645 SSSSPSPAKPG 2655
Score = 38.5 bits (88), Expect = 0.006
Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 118 RRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSR 177
RR+RS SSS GR S S + +S++ R S S+ + +T R R
Sbjct: 1634 RRSRSGSSSKGRGPSPEGSSSTE-----SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRR 1688
Query: 178 GRSRSK-SLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIA-------------RS 223
SRS L ++++ +S+S+S +T S T R R S S++ R
Sbjct: 1689 RSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRH--RRSPSVSSPEPAEKSRSSRRRR 1746
Query: 224 PCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
SP+ T S + SRSRS R K
Sbjct: 1747 SASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREK 1781
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 2 SRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDV 61
SR PP T R T P RR R PI TRR R +
Sbjct: 1946 SRSRTPPVTR---RRSRSRTPPVTRRRSRSRTSPI----------TRR-RSRSRTSPVTR 1991
Query: 62 RDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQM--KSKERHPCSPSDHRRSRSP--SQ 117
R + + R+ R + + +TP + +S+ R P P RSRSP +
Sbjct: 1992 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 2051
Query: 118 RRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS-LPRRSTSARQSRTP 170
RR+RSR+ R +R + RR + S RS+S P + + SRTP
Sbjct: 2052 RRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTP 2105
Score = 36.6 bits (83), Expect = 0.023
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 88 GDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSY 147
G +TPGQ P H+ + ++ R R++ +G + D RR
Sbjct: 107 GKEETPGQ------RPAVTETHQLAELNEKKNERLRAA-FGISDSYVDGSSFDPQRRAR- 158
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIG-KSQSSSPQKQTSS 206
++K + P+ + R+S + SR + + +K+ K G +S+SSSP+++
Sbjct: 159 -EAKQPAPEPPKPYSLVRESSS------SRSPTPKQKKKKKKKDRGRRSESSSPRRERKK 211
Query: 207 GTKSRSHGRHSDSIARS-PCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYR 256
+K + H S+S R +PK S+ K + S + R++R
Sbjct: 212 SSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHR 262
Score = 36.6 bits (83), Expect = 0.023
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 97 KSKERHPCSPSDHRRSRSPS-QRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSK 155
++ RH CS S R +S + R++ SRSSS + + ++ R R S S S S S+
Sbjct: 884 RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSS---PQPKVKAIISPRQRSHSGSSSPSPSR 940
Query: 156 SLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGT------- 208
R + +S +P N SR R S S K + +P +Q+ SG+
Sbjct: 941 VTSRTTPRRSRSVSPCSNVESRLLPR-YSHSGSSSPDTKVKPETPPRQSHSGSISPYPKV 999
Query: 209 KSRSHGRHSDSIARSPCKSPK 229
K+++ S S ++SPC K
Sbjct: 1000 KAQTPPGPSLSGSKSPCPQEK 1020
Score = 35.0 bits (79), Expect = 0.066
Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSA 164
SP + +S +P QRR+ SS + R+ S RH S + +S + PR+S S
Sbjct: 857 SPQANEQSVTP-QRRSCFESSPDPELKSRTPS----RHSCSGSSPPRVKSSTPPRQSPSR 911
Query: 165 RQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARS- 223
S P+ + R +S S S SP + TS T RS S S
Sbjct: 912 SSSPQPK---------VKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESR 962
Query: 224 --PCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
P S G ++ +TKV+ +SHS S S
Sbjct: 963 LLPRYSHSGSSSPDTKVKPETPPR-QSHSGSIS 994
Score = 34.7 bits (78), Expect = 0.086
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 24/173 (13%)
Query: 98 SKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSL 157
S+ER + S + P RSRS S R S SRH S S S K +
Sbjct: 1415 SRERSSSASSPEMKDGLPRTPSRRSRSGS--SPGLRDGSGTPSRH---SLSGSSPGMKDI 1469
Query: 158 PRRSTSAR-------------QSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQK-- 202
PR + R Q+ PR S +K L + + G S+SS QK
Sbjct: 1470 PRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSG-SESSVDQKTV 1528
Query: 203 -QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
+T G +SRS S + P SP+ + S++ + + RSRS
Sbjct: 1529 ARTPLGQRSRSGS--SQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRS 1579
Score = 32.7 bits (73), Expect = 0.33
Identities = 39/154 (25%), Positives = 51/154 (33%), Gaps = 18/154 (11%)
Query: 98 SKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSL 157
+KER S S S S S + S SSS G + S+ + + S +
Sbjct: 2527 AKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPT--- 2583
Query: 158 PRRSTSARQSRTPRRNFGSRGR---------------SRSKSLQKRSKSIGKSQSSSPQK 202
P + R+ R P R R S S S S S S SSS
Sbjct: 2584 PAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643
Query: 203 QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSET 236
+SS G + SP K P G S +
Sbjct: 2644 SSSSSPSPAKPGPQALPKPASPKKPPPGERRSRS 2677
Score = 28.5 bits (62), Expect = 6.2
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 189 SKSIGKSQSSSPQKQTSS-----GTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTA-- 241
S + +S S SP Q+ S G +SRS ++ +RSP + +G ++ +++
Sbjct: 1073 SPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPMLKSGMS 1132
Query: 242 -KHSHFRSHSRSRSYRHKNS 260
+ S F+S S S NS
Sbjct: 1133 PEQSRFQSDSSSYPTVDSNS 1152
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 69.7 bits (169), Expect = 2e-12
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 38/273 (13%)
Query: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
+LF+ V T LRREF YGPI +++ + +PRG+A++++E RD A +
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 71 LNRKWVCGRQIEIQFAQG-------DRKTPG------------QMKSKERHPCSPSDHRR 111
+ K + GR++ + +G R+ G ++ R S D R
Sbjct: 164 ADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERP 223
Query: 112 SRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS-----QSKSRSKSLPRRSTS-AR 165
SP R R R R R RS + R RR S S +S+SR K RRS ++
Sbjct: 224 GPSPLPHRDRDRDRERER-RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSK 282
Query: 166 QSRTPRRNFGSRGRSRSKSLQKRSKSI--GKSQSSSPQKQTSSGTKSRSHGRHSDSIARS 223
R+ SR R R++ ++R + + G + P + + G
Sbjct: 283 DKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE-------- 334
Query: 224 PCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYR 256
P G E K + RSH R R
Sbjct: 335 --LGPDGPDGPEEKGRDRDRERRRSHRSERERR 365
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 69.3 bits (168), Expect = 3e-12
Identities = 61/181 (33%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 2 SRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDV 61
+R PN L + ++ T DLR F +YGPI DV I D +RR RGFA+V FE+V
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 62 RDAEDALYNLNRKWVCGRQIEIQFAQGDR---KTPGQMKSKERHPCSPS----DHRRSRS 114
DA++A N + GR+I + F+ R TPG + + S D R
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRG 229
Query: 115 PSQRRTRSRS---SSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPR 171
R SRS G R+ ++ +RR S S SR RS S +S +PR
Sbjct: 230 YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRG---GYRSRSRSRSYSPR 286
Query: 172 R 172
R
Sbjct: 287 R 287
Score = 47.0 bits (110), Expect = 2e-05
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 167 SRTPRRNFG---SRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARS 223
S + +N+G SR SRS S KS + + S K+ S ++S+S R S+S +RS
Sbjct: 2 SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSR-SESRSRS 60
Query: 224 PCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
S + YT S ++ ++ + S RS+SR RH +S
Sbjct: 61 RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHS 97
Score = 47.0 bits (110), Expect = 2e-05
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQ 149
R TP + +SKE D RRSRS S+ R+ SRS S R+ RR + SR R S+
Sbjct: 31 RHTPARSRSKE-------DSRRSRSKSRSRSESRSRS-RRSSRRHYTRSRSRSRSHRRSR 82
Query: 150 SKSRSKSLPRR-STSARQSRTPRRNFGSR 177
S+S S+ RR S S T RR+ G+R
Sbjct: 83 SRSYSRDYRRRHSHSHSPMSTRRRHVGNR 111
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 122 SRSSSWGRNRRRSDSLKESRH---RRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRG 178
S ++G RS S S H + ++ ++SRSK RRS S +SR+ R SR
Sbjct: 4 SGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESR---SRS 60
Query: 179 RSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIAR 222
R S+ RS+S +S S + S + R HS R
Sbjct: 61 RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTR 104
Score = 37.0 bits (84), Expect = 0.017
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 112 SRSPSQRRTRSRSSSWGRNRRRSDSLKESRHR----RFSYSQSKSRSKSLPRRSTSARQS 167
S S Q S S R+ S K +RH R +SRSKS R + +R
Sbjct: 2 SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSR 61
Query: 168 RTPRRNFGSRGRSRSKSLQK-RSKSIGKSQSSSPQKQTSSGTKSRSH 213
R+ RR++ +R RSRS+S ++ RS+S + S + R H
Sbjct: 62 RSSRRHY-TRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRH 107
Score = 36.6 bits (83), Expect = 0.023
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGR-NRRRSDSLKESRHR-----RFSYSQSKSRSKSLP 158
S S H +S RSRS R +R +S S ESR R R Y++S+SRS+S
Sbjct: 20 SGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRS-H 78
Query: 159 RRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSP 200
RRS S SR RR R + R + +G + P
Sbjct: 79 RRSRSRSYSRDYRR----RHSHSHSPMSTRRRHVGNRANPDP 116
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 67.8 bits (164), Expect = 9e-12
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 90 RKTPGQMKSKERHPCSPS-DHR---RSRSPSQRR---TRSRSSSWGRNRRRSDSLKES-R 141
RK + +S+ R S S HR RSRS S+RR +RSRS S GR + K S +
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1896
Query: 142 HRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQS---S 198
HR S + + RS S R T +SRTP R R RS + S ++RS+S+G+ +S S
Sbjct: 1897 HRSKSRERKRKRSSSRDNRKTVRARSRTPSR----RSRSHTPSRRRRSRSVGRRRSFSIS 1952
Query: 199 SPQKQTSSGTKSRSHGRHSDSIA-RSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
++ + +SR+ R S + + RS S + T S ++ RS R RS+
Sbjct: 1953 PSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSF 2010
Score = 67.0 bits (162), Expect = 2e-11
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
++K ++S+ + S S+H+ + S+ R+R+R S RS + SR RR S
Sbjct: 1815 EKKRDSSLRSRSKRSKS-SEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRS 1873
Query: 149 QSKSRSKSLPRRSTS-ARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSG 207
S+SRSKS RRS S ++ R+P+ SR R R +S + ++ +++S +P +++ S
Sbjct: 1874 -SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSH 1932
Query: 208 TKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYR 256
T SR R S S+ R S S T + ++ RS + SR R
Sbjct: 1933 TPSRR--RRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSR 1979
Score = 56.6 bits (135), Expect = 2e-08
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 96 MKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR-- 153
+K K+ H S + R + +++ R SS +RS S + +R S S+S++R
Sbjct: 1794 VKVKDTHEKSKKNKNRDKGEKEKK---RDSSLRSRSKRSKSSEHKSRKRTSESRSRARKR 1850
Query: 154 -SKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
SKS RS + +SR+ RR SR RS+S+ + SK + +S + ++ + RS
Sbjct: 1851 SSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKE-KRKRSPKHRSKSRERKRKRS 1909
Query: 213 HGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
R + R+ ++P + S T ++ RS R RS+
Sbjct: 1910 SSRDNRKTVRARSRTPSRRSRSHT---PSRRRRSRSVGRRRSF 1949
Score = 55.5 bits (132), Expect = 5e-08
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSA 164
+PS RS +PS+RR RSRS RRRS S+ SR R +S++ S+ R T +
Sbjct: 1924 TPSRRSRSHTPSRRR-RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSR---RSRTPS 1975
Query: 165 RQSRTP-RRNFGSRGRSRSKSLQKRSKSI--GKSQSSSPQKQTSSGTK-----SRSHGRH 216
R+SRTP RR+ RSR+ S ++RS+S+ +S S SP + S T SRS R
Sbjct: 1976 RRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRR 2035
Query: 217 SDSIARSPCKSPKGYTN 233
S + +SPK T+
Sbjct: 2036 KRSRSSERGRSPKRLTD 2052
Score = 52.4 bits (124), Expect = 4e-07
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQR---RTRSRSSSWGRNRR---RSDSLKESRHR 143
R+ + +SK R S S +R RSP R R R R S R+ R R+ S SR
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929
Query: 144 RFSYSQSKSRSKSLPRRST----SARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSS 199
R + RS+S+ RR + +R+SRTP R RSR+ S + R+ S S
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR------RSRTPSRRSRTPSRRSRTPSR 1983
Query: 200 PQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
+ S +++ S R S S+ R + ++ S +++ ++ R SRS R ++
Sbjct: 1984 RSRTPSRRSRTPSRRRRSRSVVRR-----RSFSISPVRLRRSRTPLRRRFSRSPIRRKRS 2038
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 79 RQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQR-RTRSRSSSWGRNRRRSDSL 137
R I ++ R + ++ R +PS RRSR+PS+R RT SR S RRRS S+
Sbjct: 1947 RSFSISPSRRSRTPSRRSRTPSRRSRTPS--RRSRTPSRRSRTPSRRSRTPSRRRRSRSV 2004
Query: 138 KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ 196
R R FS S + R P R R SR+P R SR R +S KR + K+Q
Sbjct: 2005 --VRRRSFSISPVRLRRSRTPLR---RRFSRSPIRRKRSRSSERGRS-PKRLTDLDKAQ 2057
Score = 44.3 bits (103), Expect = 1e-04
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 101 RHPCSPSDHRRSRSPSQR-RTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR-SKSLP 158
R S S RRSR+PS+R RT SR S R R+ S + R S + S+ R S+S+
Sbjct: 1946 RRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Query: 159 RRSTSA------RQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQT 204
RR + + R+SRTP R R SRS +KRS+S + SP++ T
Sbjct: 2006 RRRSFSISPVRLRRSRTPLR----RRFSRSPIRRKRSRS--SERGRSPKRLT 2051
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 33/144 (22%)
Query: 117 QRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGS 176
++ ++++ G ++ DS SR +R S+ KSR ++ RS + ++S
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRS--------- 1851
Query: 177 RGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSET 236
SKS RS++ +S+S S +++ SS ++S+S GR S S E
Sbjct: 1852 -----SKSKSHRSQT--RSRSRSRRRRRSSRSRSKSRGRRSVS--------------KEK 1890
Query: 237 KVQTAKHSHFRSHSRSRSYRHKNS 260
+ ++ KH RS SR R + +S
Sbjct: 1891 RKRSPKH---RSKSRERKRKRSSS 1911
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 67.8 bits (164), Expect = 9e-12
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 90 RKTPGQMKSKERHPCSPS-DHR---RSRSPSQRR---TRSRSSSWGRNRRRSDSLKES-R 141
RK + +S+ R S S HR RSRS S+RR +RSRS S GR + K S +
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1896
Query: 142 HRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQS---S 198
HR S + + RS S R T +SRTP R R RS + S ++RS+S+G+ +S S
Sbjct: 1897 HRSKSRERKRKRSSSRDNRKTVRARSRTPSR----RSRSHTPSRRRRSRSVGRRRSFSIS 1952
Query: 199 SPQKQTSSGTKSRSHGRHSDSIA-RSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
++ + +SR+ R S + + RS S + T S ++ RS R RS+
Sbjct: 1953 PSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSF 2010
Score = 67.0 bits (162), Expect = 2e-11
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
++K ++S+ + S S+H+ + S+ R+R+R S RS + SR RR S
Sbjct: 1815 EKKRDSSLRSRSKRSKS-SEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRS 1873
Query: 149 QSKSRSKSLPRRSTS-ARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSG 207
S+SRSKS RRS S ++ R+P+ SR R R +S + ++ +++S +P +++ S
Sbjct: 1874 -SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSH 1932
Query: 208 TKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYR 256
T SR R S S+ R S S T + ++ RS + SR R
Sbjct: 1933 TPSRR--RRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSR 1979
Score = 56.6 bits (135), Expect = 2e-08
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 96 MKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR-- 153
+K K+ H S + R + +++ R SS +RS S + +R S S+S++R
Sbjct: 1794 VKVKDTHEKSKKNKNRDKGEKEKK---RDSSLRSRSKRSKSSEHKSRKRTSESRSRARKR 1850
Query: 154 -SKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
SKS RS + +SR+ RR SR RS+S+ + SK + +S + ++ + RS
Sbjct: 1851 SSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKE-KRKRSPKHRSKSRERKRKRS 1909
Query: 213 HGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
R + R+ ++P + S T ++ RS R RS+
Sbjct: 1910 SSRDNRKTVRARSRTPSRRSRSHT---PSRRRRSRSVGRRRSF 1949
Score = 55.5 bits (132), Expect = 5e-08
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSA 164
+PS RS +PS+RR RSRS RRRS S+ SR R +S++ S+ R T +
Sbjct: 1924 TPSRRSRSHTPSRRR-RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSR---RSRTPS 1975
Query: 165 RQSRTP-RRNFGSRGRSRSKSLQKRSKSI--GKSQSSSPQKQTSSGTK-----SRSHGRH 216
R+SRTP RR+ RSR+ S ++RS+S+ +S S SP + S T SRS R
Sbjct: 1976 RRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRR 2035
Query: 217 SDSIARSPCKSPKGYTN 233
S + +SPK T+
Sbjct: 2036 KRSRSSERGRSPKRLTD 2052
Score = 52.4 bits (124), Expect = 4e-07
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQR---RTRSRSSSWGRNRR---RSDSLKESRHR 143
R+ + +SK R S S +R RSP R R R R S R+ R R+ S SR
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929
Query: 144 RFSYSQSKSRSKSLPRRST----SARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSS 199
R + RS+S+ RR + +R+SRTP R RSR+ S + R+ S S
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR------RSRTPSRRSRTPSRRSRTPSR 1983
Query: 200 PQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
+ S +++ S R S S+ R + ++ S +++ ++ R SRS R ++
Sbjct: 1984 RSRTPSRRSRTPSRRRRSRSVVRR-----RSFSISPVRLRRSRTPLRRRFSRSPIRRKRS 2038
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 79 RQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQR-RTRSRSSSWGRNRRRSDSL 137
R I ++ R + ++ R +PS RRSR+PS+R RT SR S RRRS S+
Sbjct: 1947 RSFSISPSRRSRTPSRRSRTPSRRSRTPS--RRSRTPSRRSRTPSRRSRTPSRRRRSRSV 2004
Query: 138 KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ 196
R R FS S + R P R R SR+P R SR R +S KR + K+Q
Sbjct: 2005 --VRRRSFSISPVRLRRSRTPLR---RRFSRSPIRRKRSRSSERGRS-PKRLTDLDKAQ 2057
Score = 44.3 bits (103), Expect = 1e-04
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 101 RHPCSPSDHRRSRSPSQR-RTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR-SKSLP 158
R S S RRSR+PS+R RT SR S R R+ S + R S + S+ R S+S+
Sbjct: 1946 RRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVV 2005
Query: 159 RRSTSA------RQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQT 204
RR + + R+SRTP R R SRS +KRS+S + SP++ T
Sbjct: 2006 RRRSFSISPVRLRRSRTPLR----RRFSRSPIRRKRSRS--SERGRSPKRLT 2051
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 33/144 (22%)
Query: 117 QRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGS 176
++ ++++ G ++ DS SR +R S+ KSR ++ RS + ++S
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRS--------- 1851
Query: 177 RGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSET 236
SKS RS++ +S+S S +++ SS ++S+S GR S S E
Sbjct: 1852 -----SKSKSHRSQT--RSRSRSRRRRRSSRSRSKSRGRRSVS--------------KEK 1890
Query: 237 KVQTAKHSHFRSHSRSRSYRHKNS 260
+ ++ KH RS SR R + +S
Sbjct: 1891 RKRSPKH---RSKSRERKRKRSSS 1911
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 67.0 bits (162), Expect = 2e-11
Identities = 59/169 (34%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 93 PGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKS 152
P + + K RH S S RR R+PS R R R+R RS RR S+S+S+S
Sbjct: 239 PDKKEEKRRHSRSRSRSRRRRTPSSSRHR-------RSRSRS--------RRRSHSKSRS 283
Query: 153 RSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
R RRS S R+ R+ R G R RS SK+ K+ + K +S +P K S+ +SRS
Sbjct: 284 R-----RRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRS 338
Query: 213 -----HGRHSDSIARSPCK--SPKGYTNSETKVQTAKHSHFRSHSRSRS 254
R S S RSP K SPK + + K + + RS
Sbjct: 339 ASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERS 387
Score = 65.1 bits (157), Expect = 6e-11
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 21/174 (12%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESR---HRRFS 146
R + + +S+ R S S HRRSRS S+RR+ S+S R+RRRS S + R R
Sbjct: 247 RHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKS----RSRRRSKSPRRRRSHSRERGR 302
Query: 147 YSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSS 206
S+S S+++ + ++S+TP +++ + RSRS S ++R + +S + SP+K S
Sbjct: 303 RSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRR-SRSGTRSPKKPRSP 361
Query: 207 GTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSH-FRSHSRSRSYRHKN 259
K ++RSP SP+ + + K + + S R S S+ + K+
Sbjct: 362 KRK----------LSRSP--SPRRHKKEKKKDKDKERSRDERERSTSKKKKSKD 403
Score = 43.1 bits (100), Expect = 2e-04
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156
K K+R P + +R RSRS+S R RRRS S S + S + SRS S
Sbjct: 318 KEKKRSKTPPKSYSTAR-------RSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPS 370
Query: 157 LPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTK 209
R ++ + R+ R RS SK + + K + + S K T+
Sbjct: 371 PRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTR 423
Score = 41.2 bits (95), Expect = 0.001
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQ 149
+K + K + P S S RRSRS S+ R R RS S R+ ++ S K R+ S S
Sbjct: 314 KKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPK----RKLSRSP 369
Query: 150 SKSRSKSLPRRSTSARQSRTPRRNFGSR---GRSRSKSLQKRSKS 191
S R K ++ +SR R S+ + + K +++S+S
Sbjct: 370 SPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSES 414
Score = 34.7 bits (78), Expect = 0.086
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 154 SKSLPRRSTSARQSRTPRRNFGSRGRSR-------SKSLQKRSKSIGKSQSSSPQKQTSS 206
++SL + + RR+ SR RSR S+ + RS+S +S S S ++ S
Sbjct: 229 AQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSK 288
Query: 207 GTK-----SRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHF-RSHSRSRSYRHKNS 260
+ SR GR S S +++ K + +K +S RS S SR R + S
Sbjct: 289 SPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRS 348
Score = 31.2 bits (69), Expect = 0.95
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 182 SKSLQKRSKSIGKSQSS-SPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT 240
SK +++ K + ++QS S + + R H R R S + S ++ +
Sbjct: 216 SKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRR 275
Query: 241 AKHSHFRSHSRSRSYRHKNS 260
HS RS RS+S R + S
Sbjct: 276 RSHSKSRSRRRSKSPRRRRS 295
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 66.2 bits (160), Expect = 3e-11
Identities = 60/176 (34%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 2 SRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDV 61
SR PNT L + ++ T DLR F RYGP+ V + D T R RGFA+V FE +
Sbjct: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
Query: 62 RDAEDALYNLNRKWVCGRQIEIQFA---QGDRKTPGQMKSKERHP----------CSPSD 108
D+++A+ N + GR+I + ++ + TPG + H
Sbjct: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
Query: 109 HRRSRSPSQR---RTRSRSSSWG-RNRRRSDSLKESRHRRFSYSQSKSRSKSLPRR 160
RR S R R R + R RRRS S SR+R S+S+SRS S PRR
Sbjct: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYR----SRSRSRSYS-PRR 281
Score = 45.1 bits (105), Expect = 6e-05
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 111 RSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTP 170
RS+S S T +R S R+ RS S S S+SKSRS+S RR + R +R+
Sbjct: 15 RSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS--RRHSHRRYTRSR 72
Query: 171 RRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSH 213
+ R RSRS+S + +S+S SP T SR++
Sbjct: 73 SHSHSHRRRSRSRSYTPEYRR-RRSRSHSPMSNRRRHTGSRAN 114
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 25/114 (21%)
Query: 92 TPGQMKSKERH----PCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSY 147
TP ++KS+ R P S H S S S+ ++RSRS RR S HRR Y
Sbjct: 24 TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS------RRHS-------HRR--Y 68
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKS-LQKRSKSIGKSQSSSP 200
++S+S S S RRS S +S TP R RSRS S + R + G + P
Sbjct: 69 TRSRSHSHSHRRRSRS--RSYTPEYR---RRRSRSHSPMSNRRRHTGSRANPDP 117
Score = 34.7 bits (78), Expect = 0.086
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 27/136 (19%)
Query: 134 SDSLKESRHRRFSYSQSKSRSKSLPR-RSTSARQSRTPRR-----NFGSRGRSRSKSLQK 187
SD + + R S SQSKS + + R +S S SR+P R SR RS+S+S
Sbjct: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRS--- 58
Query: 188 RSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKH---S 244
+S+ S ++ T S + S SH R S S + YT + ++ H S
Sbjct: 59 ------RSRRHSHRRYTRSRSHSHSHRRRSRS---------RSYTPEYRRRRSRSHSPMS 103
Query: 245 HFRSHSRSRSYRHKNS 260
+ R H+ SR+ N+
Sbjct: 104 NRRRHTGSRANPDPNT 119
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 66.2 bits (160), Expect = 3e-11
Identities = 66/265 (24%), Positives = 102/265 (38%), Gaps = 23/265 (8%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
LFI + T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWG-RN 130
N K + G+ I+++ A T +S R P P RSR P + R S G R
Sbjct: 70 NGKSLDGKAIKVEQA-----TKPSFESGRRGPPPPP---RSRGPPRGLRGGRGGSGGTRG 121
Query: 131 RRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSK 190
+ +++ S SR +R R P + G RS S
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
Query: 191 SIGKSQSS---SPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAK----- 242
+ + + S P+++ + D + S + Y +S A
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDY 241
Query: 243 ------HSHFRSHSRSRSYRHKNSW 261
HS R SR Y ++ +
Sbjct: 242 TYRDYGHSSSRDDYPSRGYSDRDGY 266
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 65.5 bits (158), Expect = 5e-11
Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 37/192 (19%)
Query: 86 AQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF 145
A+ +R+ Q S + S D +SRSPS R+RS+S + R+R RS
Sbjct: 1285 ARLNRRPRNQESSSDEQTPSRDDDSQSRSPS--RSRSKSETKSRHRTRS----------V 1332
Query: 146 SYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKR--------SKSIGKSQS 197
SYS S+SRS+S S SR+ R + SRGR+RS+S R S+S +S S
Sbjct: 1333 SYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSS 1392
Query: 198 SSPQKQTSSGT--------KSRSHGRHSDSIARS-----PCKSPKGY-TNSETKVQTAKH 243
P ++ S T +SRS + SDS R +S + Y ++SE+ +
Sbjct: 1393 YDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRSYGSDSES---DRSY 1449
Query: 244 SHFRSHSRSRSY 255
SH RS S S Y
Sbjct: 1450 SHHRSPSESSRY 1461
Score = 54.3 bits (129), Expect = 1e-07
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 95 QMKSKER-HPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR 153
++KSK + P S D R + RR R++ SS D +SR S S+S+S+
Sbjct: 1265 EIKSKNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSR----SPSRSRSK 1320
Query: 154 SKSLPR---RSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKS 210
S++ R RS S SR+ R+ S RSRS S RS+S G + ++SS
Sbjct: 1321 SETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYS---RSRSRGWYSRGRTRSRSSSYRSY 1377
Query: 211 RSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYR 256
+SH S S +RS P +S ++ T + RS SRSRS R
Sbjct: 1378 KSHRTSSRSRSRSSSYDP----HSRSRSYTYDSYYSRSRSRSRSQR 1419
Score = 53.1 bits (126), Expect = 2e-07
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 129 RNRRRSDSL-----KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSK 183
+N+ R SL K +R R +Q S + P R + QSR+P R SR +S +K
Sbjct: 1269 KNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDS-QSRSPSR---SRSKSETK 1324
Query: 184 SLQKR-----SKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKV 238
S + S S +S+SS+ ++ S ++SRS G +S RS S + Y + T
Sbjct: 1325 SRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSS 1384
Query: 239 QT-AKHSHFRSHSRSRSYRH 257
++ ++ S + HSRSRSY +
Sbjct: 1385 RSRSRSSSYDPHSRSRSYTY 1404
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 1/172 (0%)
Query: 86 AQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF 145
++ D+ T + + S R SRS S R+ +RS S + RS S H R
Sbjct: 671 SESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSYTRSRSLASSHSRSRSPSSRSHSRN 730
Query: 146 SYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTS 205
YS S+S S S+ R +R S G+ S S +K S S K+ S K
Sbjct: 731 KYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKYVKGRD 790
Query: 206 SGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHF-RSHSRSRSYR 256
+ R + S+ S +++ + K R+H++ R
Sbjct: 791 RSSCVRKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNR 842
Score = 44.3 bits (103), Expect = 1e-04
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 33/176 (18%)
Query: 105 SPSDHRRSR-SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF---SYSQSKSRSKSLPRR 160
S S H+R + S S + T S+ S R S+S SR R SYS+S +RS+SL
Sbjct: 661 SSSYHKREKNSESDQSTYSKYSD-----RSSESSPRSRSRSSRSRSYSRSYTRSRSL--- 712
Query: 161 STSARQSRTPRRNFGSRGR-------SRSKS-----------LQKRSKSIGKSQSSSPQK 202
++S +SR+P SR + SRS S ++R +S GK S S +K
Sbjct: 713 ASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKK 772
Query: 203 QTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
+SS K+ H ++ RS C + Y+ S + + + S S ++S + K
Sbjct: 773 HSSSSEKT-LHSKYVKGRDRSSC--VRKYSESRSSLDYSSDSEQSSVQATQSAQEK 825
Score = 41.6 bits (96), Expect = 7e-04
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 31/196 (15%)
Query: 82 EIQFAQGDRKTPGQMKSKE---RHPCSPSDHRRSRSPSQRR----------TRSRSSSWG 128
E+Q + R G+ SK PCS RS S R + +R S
Sbjct: 368 EMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLSTARHSGHH 427
Query: 129 RNRRRSDSLK------ESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS-R 181
+ RR+ +K + +H R + Q+K R +P S++ S ++ R RS R
Sbjct: 428 KKRRKEKKVKHKKKGKKQKHCR-RHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSR 486
Query: 182 SKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR---HSDSIARSPCKSPKGYTNSETKV 238
S SL S S Q+S SR R HS S +R G + S T
Sbjct: 487 SSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYSR-------GSSRSRTAS 539
Query: 239 QTAKHSHFRSHSRSRS 254
+++ HS RS SRS S
Sbjct: 540 KSSSHSRSRSKSRSSS 555
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRR-RSDSLKESRHRRFSYSQS-KSRS 154
++K+R PSD S+S TR SS R R RS SL + +S+S K
Sbjct: 453 QTKKRRILIPSDIESSKSS----TRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQ 508
Query: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQK---RSKSIGKSQSSSPQKQTSSGTKSR 211
SL S + +S++ +++ SRG SRS++ K S+S KS+SSS SG + R
Sbjct: 509 SSLTHSSRDSYRSKSHSQSY-SRGSSRSRTASKSSSHSRSRSKSRSSS-----KSGHRKR 562
Query: 212 S 212
+
Sbjct: 563 A 563
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWG------RNRRRSDSLKESR--HRRFSYSQSKSRSKS 156
S S RR +S R SRSSS R+ +SD +S H +SKS S+S
Sbjct: 468 SKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQS 527
Query: 157 LPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSR 211
R S+ +SRT ++ S RSRSKS K S SP+K S ++++
Sbjct: 528 YSRGSS---RSRTASKS-SSHSRSRSKSRSSSKSGHRKRASKSPRKTASQLSENK 578
Score = 40.0 bits (92), Expect = 0.002
Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 56/233 (24%)
Query: 85 FAQGDRKTPGQMKSKERHPCSPSDHRRS--RSPSQRRTRSRSSSWGRNRRRSDSLKESRH 142
+++ D+ + R H +S R S+ RT S+SSS R+R +S S +S H
Sbjct: 500 WSKSDKDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGH 559
Query: 143 R-RFSYSQSKSRS--------KSLPRRSTSARQ------------------SRTPRRNFG 175
R R S S K+ S K+ P R+T A+ S +P +
Sbjct: 560 RKRASKSPRKTASQLSENKPVKTEPLRATMAQNENVVVQPVVAENIPVIPLSDSPPPSRW 619
Query: 176 SRGRSRSKSLQKR----------------------SKSIGKSQSSSPQKQTS---SGTKS 210
G+ K +R K G S S +++ S T S
Sbjct: 620 KPGQKPWKPSYERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHKREKNSESDQSTYS 679
Query: 211 RSHGRHSDSIARSPCKS--PKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNSW 261
+ R S+S RS +S + Y+ S T+ ++ SH RS S S +N +
Sbjct: 680 KYSDRSSESSPRSRSRSSRSRSYSRSYTRSRSLASSHSRSRSPSSRSHSRNKY 732
Score = 35.4 bits (80), Expect = 0.050
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 148 SQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ------SSSPQ 201
S S + S + S+ R+ S RSRS+S RS+S +S +SS
Sbjct: 660 SSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRS--SRSRSYSRSYTRSRSLASSHS 717
Query: 202 KQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
+ S ++S S ++SD S C YT+ + RS + S HK
Sbjct: 718 RSRSPSSRSHSRNKYSD---HSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHK 771
Score = 33.9 bits (76), Expect = 0.15
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 96 MKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSR-- 153
+K ++R C + SRS + S SS + + K+ + R Q K+R
Sbjct: 786 VKGRDRSSCVRK-YSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGE 844
Query: 154 SKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSH 213
KS R + RT + N R+ SK +K S+ ++ + +K+ SH
Sbjct: 845 EKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSH 904
Score = 33.5 bits (75), Expect = 0.19
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 194 KSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSR 253
++Q SS +QT S R DS +RSP +S + SETK + S SHSRSR
Sbjct: 1292 RNQESSSDEQTPS--------RDDDSQSRSPSRSR---SKSETKSRHRTRSVSYSHSRSR 1340
Query: 254 SYRHKNSW 261
S +S+
Sbjct: 1341 SRSSTSSY 1348
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 138 KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQS 197
K+ H S S S S S S + R+ RR R + KRSK K S
Sbjct: 190 KKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKV------KRSKKRRKEAS 243
Query: 198 SSPQKQTSSGTKSRSHGRHSDS 219
SS + + + H SD+
Sbjct: 244 SSEEPRNKHAMNPKGHSERSDT 265
Score = 29.6 bits (65), Expect = 2.8
Identities = 50/196 (25%), Positives = 74/196 (37%), Gaps = 43/196 (21%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSS------------SWGRNRR------------ 132
+SK R S S HR+ S S R+T S+ S + +N
Sbjct: 548 RSKSRSS-SKSGHRKRASKSPRKTASQLSENKPVKTEPLRATMAQNENVVVQPVVAENIP 606
Query: 133 ---RSDSLKESRHR--RFSYSQSKSRSKSLPRRSTSAR--QSRTPRRNFGSRGRSRS-KS 184
SDS SR + + + S R + + ++T QS N G S S
Sbjct: 607 VIPLSDSPPPSRWKPGQKPWKPSYERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHK 666
Query: 185 LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHS 244
+K S+S + S + + S +SRS S S +RS YT S + + S
Sbjct: 667 REKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRS-------YTRSRSLASSHSRS 719
Query: 245 H---FRSHSRSRSYRH 257
RSHSR++ H
Sbjct: 720 RSPSSRSHSRNKYSDH 735
Score = 28.5 bits (62), Expect = 6.2
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 109 HRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQS- 167
H++ S S++ S+ + + R RS +++ R S S +S + + SA++
Sbjct: 770 HKKHSSSSEKTLHSK---YVKGRDRSSCVRKYSESRSSLDYSSDSEQSSVQATQSAQEKE 826
Query: 168 ------RTPRRNFGSRGRSRSKSLQ----------KRSKSIGKSQSSSPQKQTSSGTKSR 211
RT + +RG +SKS + K + S S P+++ +G+K
Sbjct: 827 KQGQMERTHNKQEKNRGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWD 886
Query: 212 SHGRHSDSIARS 223
S + ++
Sbjct: 887 SESNSERDVTKN 898
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 63.5 bits (153), Expect = 2e-10
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
DR+ + +S+ RH SD R SRS +R+RS R RRRS S R R S
Sbjct: 286 DRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRS------RERRRSRSRDRRRSRSHDRS 339
Query: 149 QSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGT 208
+ K RS+S RR + +R R+++ R +SR + ++SK K S + SG+
Sbjct: 340 ERKHRSRSRDRRRSKSRD----RKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGS 395
Query: 209 KSRSHGRHSDSIARSPCKSPKGYTNSETK 237
+ + + S K+ T+ + K
Sbjct: 396 REKQSEDTNTESKESDTKNEVNGTSEDIK 424
Score = 48.1 bits (113), Expect = 8e-06
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Query: 95 QMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRS 154
+ + K R + R+R +RR RSRS S +R SR + S S+ + RS
Sbjct: 267 ERERKRRREEEEREKERARD-RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS 325
Query: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHG 214
+S RR + + + SR R RSKS ++S Q + S + R
Sbjct: 326 RSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSD 385
Query: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKH 243
S+ + TN+E+K K+
Sbjct: 386 DKKSSVKSGSREKQSEDTNTESKESDTKN 414
Score = 43.1 bits (100), Expect = 2e-04
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 29/168 (17%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156
K ++R D R + +R R + R R R + +E + RR + K R++
Sbjct: 233 KLRKRTEEPDRDERLKKEKQEREEREKE----REREREE--RERKRRREEEEREKERARD 286
Query: 157 LPRRSTSARQSR-----TPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSR 211
RR S +SR + RR SR RS+S ++R +S+S ++ S R
Sbjct: 287 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERR-----RSRSRDRRRSRSHDRSER 341
Query: 212 SHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
H S RS + K Y KH RS SR R K+
Sbjct: 342 KHRSRSRDRRRSKSRDRKSY----------KH---RSKSRDREQDRKS 376
Score = 42.4 bits (98), Expect = 4e-04
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 99 KERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLP 158
KE+ + R R +R + R R + R+ ++ R+ S S+S+ S++
Sbjct: 249 KEKQEREEREKEREREREERERKRRREEEEREKERA---RDRERRKRSRSRSRHSSRTSD 305
Query: 159 RRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ----SSSPQKQTSSGTKSRSHG 214
RR + +R + R R RSRS+ ++RS+S +S+ S S ++ S +S+
Sbjct: 306 RRCSRSRDHKRSRSR--ERRRSRSRD-RRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYK 362
Query: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
S S R + K E + K S +S SR + N+
Sbjct: 363 HRSKSRDREQDRKSK---EKEKRGSDDKKSSVKSGSREKQSEDTNT 405
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 63.5 bits (153), Expect = 2e-10
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 89 DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYS 148
DR+ + +S+ RH SD R SRS +R+RS R RRRS S R R S
Sbjct: 286 DRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRS------RERRRSRSRDRRRSRSHDRS 339
Query: 149 QSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGT 208
+ K RS+S RR + +R R+++ R +SR + ++SK K S + SG+
Sbjct: 340 ERKHRSRSRDRRRSKSRD----RKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGS 395
Query: 209 KSRSHGRHSDSIARSPCKSPKGYTNSETK 237
+ + + S K+ T+ + K
Sbjct: 396 REKQSEDTNTESKESDTKNEVNGTSEDIK 424
Score = 48.1 bits (113), Expect = 8e-06
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Query: 95 QMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRS 154
+ + K R + R+R +RR RSRS S +R SR + S S+ + RS
Sbjct: 267 ERERKRRREEEEREKERARD-RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRS 325
Query: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHG 214
+S RR + + + SR R RSKS ++S Q + S + R
Sbjct: 326 RSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSD 385
Query: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKH 243
S+ + TN+E+K K+
Sbjct: 386 DKKSSVKSGSREKQSEDTNTESKESDTKN 414
Score = 43.1 bits (100), Expect = 2e-04
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 29/168 (17%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156
K ++R D R + +R R + R R R + +E + RR + K R++
Sbjct: 233 KLRKRTEEPDRDERLKKEKQEREEREKE----REREREE--RERKRRREEEEREKERARD 286
Query: 157 LPRRSTSARQSR-----TPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSR 211
RR S +SR + RR SR RS+S ++R +S+S ++ S R
Sbjct: 287 RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERR-----RSRSRDRRRSRSHDRSER 341
Query: 212 SHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKN 259
H S RS + K Y KH RS SR R K+
Sbjct: 342 KHRSRSRDRRRSKSRDRKSY----------KH---RSKSRDREQDRKS 376
Score = 42.4 bits (98), Expect = 4e-04
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 99 KERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLP 158
KE+ + R R +R + R R + R+ ++ R+ S S+S+ S++
Sbjct: 249 KEKQEREEREKEREREREERERKRRREEEEREKERA---RDRERRKRSRSRSRHSSRTSD 305
Query: 159 RRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ----SSSPQKQTSSGTKSRSHG 214
RR + +R + R R RSRS+ ++RS+S +S+ S S ++ S +S+
Sbjct: 306 RRCSRSRDHKRSRSR--ERRRSRSRD-RRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYK 362
Query: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNS 260
S S R + K E + K S +S SR + N+
Sbjct: 363 HRSKSRDREQDRKSK---EKEKRGSDDKKSSVKSGSREKQSEDTNT 405
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 63.2 bits (152), Expect = 2e-10
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
LFI + T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNR 131
N K + G+ I+++ A S ER P RSR P + R S G
Sbjct: 70 NGKSLDGKAIKVEQA--------TKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGG--- 118
Query: 132 RRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKS 191
R + YS + + S S R ++ PR S RS L + S
Sbjct: 119 TRGPPSRGGHMDDGGYSMNFNMSSS--RGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSG 176
Query: 192 IGKSQSSSPQKQTSSGTKSR 211
+G S + + G R
Sbjct: 177 MGGRAPLSRGRDSYGGPPRR 196
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 63.2 bits (152), Expect = 2e-10
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
LFI + T + L FG+YG IV+V + D T + RGFA+V FE DA+DA ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNR 131
N K + G+ I+++ A S ER P RSR P + R S G
Sbjct: 70 NGKSLDGKAIKVEQA--------TKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGG--- 118
Query: 132 RRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKS 191
R + YS + + S S R ++ PR S RS L + S
Sbjct: 119 TRGPPSRGGHMDDGGYSMNFNMSSS--RGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSG 176
Query: 192 IGKSQSSSPQKQTSSGTKSR 211
+G S + + G R
Sbjct: 177 MGGRAPLSRGRDSYGGPPRR 196
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRR-STS 163
S S RS+S SQ +RSRS S R +R S SR R +YS+S+SR + R
Sbjct: 6 SRSHSSRSKSRSQSSSRSRSRSHSRKKRYS-----SRSRSRTYSRSRSRDRMYSRDYRRD 60
Query: 164 ARQSRTPRRNFGSRGRSRS------------------KSLQKRSKSIGKSQSSSPQKQTS 205
R +R RR +G RGR R RS G+S+S SP++++
Sbjct: 61 YRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSV 120
Query: 206 SGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAK 242
S +SRS R S +RSP S ++ +K +K
Sbjct: 121 SSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSK 157
Score = 44.7 bits (104), Expect = 8e-05
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 109 HRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSR 168
HR P R SRS GR+R RS +R S S +SRS+S RR S R SR
Sbjct: 89 HRGGYRPVWNRRHSRSPRRGRSRSRSP-------KRRSVSSQRSRSRS--RR--SYRSSR 137
Query: 169 TPRRNFGSRGRSRSKS--LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCK 226
+PR + SKS ++R +++ + + Q S KS+S D+ P +
Sbjct: 138 SPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSE 197
Query: 227 SPKGYTNS 234
S + S
Sbjct: 198 SIDEFNKS 205
Score = 39.3 bits (90), Expect = 0.003
Identities = 53/177 (29%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 101 RHPCSPSDHR-RSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLP- 158
RH SP R RSRSP +RR+ S S R+RR S + SR R S S+S S P
Sbjct: 100 RHSRSPRRGRSRSRSP-KRRSVSSQRSRSRSRR---SYRSSRSPRSSSSRSSSPYSKSPV 155
Query: 159 --RRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKS------ 210
RR + +Q++ +SKS ++ + S S + S S
Sbjct: 156 SKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPG 215
Query: 211 ------RSHGRHSDS-IARSPCKS------PKGYTNSETKVQTAKHSHFRSHSRSRS 254
HS S IA P +S P T K ++HSH HS RS
Sbjct: 216 LSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERS 272
Score = 36.6 bits (83), Expect = 0.023
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 97 KSKERHPC---SPSDHRR-SRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKS 152
K+ E H SP HRR SPS R +R + R + + + + R S
Sbjct: 464 KATEEHSTRQKSPEIHRRIDISPSTLRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHD 523
Query: 153 RSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
+ RS S+ R + GSR + ++ K KS K S + +
Sbjct: 524 IDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSY---------KDDSKHKREQD 574
Query: 213 HGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
H R S S A SP SP E+K + + F++H + Y
Sbjct: 575 HSRSSSSSA-SP-SSPSSREEKESKKE--REEEFKTHHEMKEY 613
Score = 33.9 bits (76), Expect = 0.15
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 178 GRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETK 237
GRS S+S RSKS + Q+SS ++SRSH R +RS ++ Y+ S ++
Sbjct: 2 GRSNSRSHSSRSKS---------RSQSSSRSRSRSHSRKKRYSSRSRSRT---YSRSRSR 49
Query: 238 VQTAKHSHFRSHSRSRSYR 256
+ + R + +R R
Sbjct: 50 DRMYSRDYRRDYRNNRGMR 68
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRR-STS 163
S S RS+S SQ +RSRS S R +R S SR R +YS+S+SR + R
Sbjct: 6 SRSHSSRSKSRSQSSSRSRSRSHSRKKRYS-----SRSRSRTYSRSRSRDRMYSRDYRRD 60
Query: 164 ARQSRTPRRNFGSRGRSRS------------------KSLQKRSKSIGKSQSSSPQKQTS 205
R +R RR +G RGR R RS G+S+S SP++++
Sbjct: 61 YRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSV 120
Query: 206 SGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAK 242
S +SRS R S +RSP S ++ +K +K
Sbjct: 121 SSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSK 157
Score = 44.7 bits (104), Expect = 8e-05
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 109 HRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSR 168
HR P R SRS GR+R RS +R S S +SRS+S RR S R SR
Sbjct: 89 HRGGYRPVWNRRHSRSPRRGRSRSRSP-------KRRSVSSQRSRSRS--RR--SYRSSR 137
Query: 169 TPRRNFGSRGRSRSKS--LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCK 226
+PR + SKS ++R +++ + + Q S KS+S D+ P +
Sbjct: 138 SPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSE 197
Query: 227 SPKGYTNS 234
S + S
Sbjct: 198 SIDEFNKS 205
Score = 39.3 bits (90), Expect = 0.003
Identities = 53/177 (29%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 101 RHPCSPSDHR-RSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLP- 158
RH SP R RSRSP +RR+ S S R+RR S + SR R S S+S S P
Sbjct: 100 RHSRSPRRGRSRSRSP-KRRSVSSQRSRSRSRR---SYRSSRSPRSSSSRSSSPYSKSPV 155
Query: 159 --RRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKS------ 210
RR + +Q++ +SKS ++ + S S + S S
Sbjct: 156 SKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPG 215
Query: 211 ------RSHGRHSDS-IARSPCKS------PKGYTNSETKVQTAKHSHFRSHSRSRS 254
HS S IA P +S P T K ++HSH HS RS
Sbjct: 216 LSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERS 272
Score = 36.6 bits (83), Expect = 0.023
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 97 KSKERHPC---SPSDHRR-SRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKS 152
K+ E H SP HRR SPS R +R + R + + + + R S
Sbjct: 637 KATEEHSTRQKSPEIHRRIDISPSTLRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHD 696
Query: 153 RSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRS 212
+ RS S+ R + GSR + ++ K KS K S + +
Sbjct: 697 IDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSY---------KDDSKHKREQD 747
Query: 213 HGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSY 255
H R S S A SP SP E+K + + F++H + Y
Sbjct: 748 HSRSSSSSA-SP-SSPSSREEKESKKE--REEEFKTHHEMKEY 786
Score = 33.9 bits (76), Expect = 0.15
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 178 GRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETK 237
GRS S+S RSKS + Q+SS ++SRSH R +RS ++ Y+ S ++
Sbjct: 2 GRSNSRSHSSRSKS---------RSQSSSRSRSRSHSRKKRYSSRSRSRT---YSRSRSR 49
Query: 238 VQTAKHSHFRSHSRSRSYR 256
+ + R + +R R
Sbjct: 50 DRMYSRDYRRDYRNNRGMR 68
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 62.8 bits (151), Expect = 3e-10
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 59 EDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQR 118
ED DA+ + YNL+ + + + +R++ + KS+ H S S RS SPS
Sbjct: 173 EDEDDADLSKYNLD----ASEEEDSNKKKSNRRS--RSKSRSSHSRSSS---RSSSPSSS 223
Query: 119 RTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRG 178
R+RSRS R RS S +SR R S +S+SR S S R S +PR+ S
Sbjct: 224 RSRSRS------RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS 277
Query: 179 RSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDS 219
S + +KRS+S S +++T S + R H S S
Sbjct: 278 SSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGS 318
Score = 60.5 bits (145), Expect = 1e-09
Identities = 60/161 (37%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 98 SKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSL 157
S+E +RRSRS S R + SRSSS + S S SR R S SQS+SRS S
Sbjct: 188 SEEEDSNKKKSNRRSRSKS-RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 158 PRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHS 217
R + +SR+ SR S S +KRS S S SSSP++ + RS R S
Sbjct: 247 ERSRSRGSKSRS-----SSRSHRGSSSPRKRSYS---SSSSSPER-----NRKRSRSRSS 293
Query: 218 DSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHK 258
S R K T S + + + S SHS SRS K
Sbjct: 294 SSGDRK-----KRRTRSRSPERRHRSSSGSSHSGSRSSSKK 329
Score = 44.7 bits (104), Expect = 8e-05
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 97 KSKERHPCSPSDHRRSRSPSQRRTRSR-----SSSWGRNRRRSDSLKESRHRRFSYSQSK 151
+S+ R S S RSRS S+ R+RSR SSS R+ R S S ++ + S S +
Sbjct: 226 RSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS--RSHRGSSSPRKRSYSSSSSSPER 283
Query: 152 SRSKSLPRRSTSA--RQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQ 196
+R +S R S+S ++ RT R+ R RS S S S+S K +
Sbjct: 284 NRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSSKKK 330
Score = 43.5 bits (101), Expect = 2e-04
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 135 DSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN------FGSRGRSRSKSLQKR 188
D S++ + + S K RRS S +S R + SR RSRS+S +
Sbjct: 176 DDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS-RSS 234
Query: 189 SKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRS 248
S S +S+SSS ++ S G+KSRS R S + SP K + Y++S + + + + RS
Sbjct: 235 SSSQSRSRSSSRERSRSRGSKSRSSSR-SHRGSSSPRK--RSYSSSSS---SPERNRKRS 288
Query: 249 HSRSRS 254
SRS S
Sbjct: 289 RSRSSS 294
Score = 38.1 bits (87), Expect = 0.008
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 163 SARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSI-A 221
++ + + ++ R RS+S+S RS S+SSSP +SS ++SRS R S S +
Sbjct: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRS----SSRSSSP---SSSRSRSRSRSRSSSSSQS 239
Query: 222 RSPCKSPKGYTNSETKVQTAKHSHFRSHS-RSRSYRHKNS 260
RS S + + +K +++ SH S S R RSY +S
Sbjct: 240 RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS 279
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 62.0 bits (149), Expect = 5e-10
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Query: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSA 164
+P + +R +SPS RR + S +++ S + +R R+ S SQS + + RR +
Sbjct: 807 TPQEKKRPQSPSPRRETGKESR--KSQSPSPKNESARGRKKSRSQSPKKDIARERRQS-- 862
Query: 165 RQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQ-KQTSSGTKSRSHGRHSDSIARS 223
QSR+P+R+ R RS+SL R ++ +++ S P+ K +S G KSRS R +
Sbjct: 863 -QSRSPKRDTTRESR-RSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERE----- 915
Query: 224 PCKSPKGYTNSETKVQTAKHSHFRSHSRSRS 254
S + E + +T K S RSHSRS S
Sbjct: 916 ---SDRDGQRRERERRTRKWSRSRSHSRSPS 943
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 94 GQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQS--- 150
G+ KS+ + P D R R SQ R+ R ++ R RRS+SL R +S
Sbjct: 842 GRKKSRSQSP--KKDIARERRQSQSRSPKRDTT--RESRRSESLSPRRETSRENKRSQPR 897
Query: 151 --------KSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQK 202
KSRS+S R S Q R R RSRS S + S+ KS+SSS +
Sbjct: 898 VKDSSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHS-RSPSRCRTKSKSSSFGR 956
Query: 203 QTSSGTKSRSHGRHSDSIARSP 224
R GR ++ R P
Sbjct: 957 IDRDSYSPRWKGRWANDGWRCP 978
Score = 35.8 bits (81), Expect = 0.039
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQ 149
R+T + K + S +SRS S+ R R G+ R R E R R++S S+
Sbjct: 885 RETSRENKRSQPRVKDSSPGEKSRSQSRERESDRD---GQRRER-----ERRTRKWSRSR 936
Query: 150 SKSRSKSLPR-RSTSARQSRTPRRNFGSRGRSR-SKSLQKRSKSIGKSQSSSPQKQTSSG 207
S SRS S R +S S+ R R ++ R + R + + + + + + P+KQ +
Sbjct: 937 SHSRSPSRCRTKSKSSSFGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENT 996
Query: 208 TKSRS 212
K ++
Sbjct: 997 RKEKN 1001
Score = 35.4 bits (80), Expect = 0.050
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 78 GRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHR-RSRSPSQRRTRSRSSSWGRNRRRSDS 136
G + Q + + GQ + +ER S R SRSPS+ RT+S+SSS+GR R S S
Sbjct: 904 GEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFGRIDRDSYS 963
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,215,413
Number of Sequences: 37866
Number of extensions: 454541
Number of successful extensions: 8385
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 390
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 2515
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.