Guide to the Human Genome
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Search of human proteins with 148225659

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148225659 endonuclease domain containing 1 [Homo sapiens]
         (500 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148225659 endonuclease domain containing 1 [Homo sapiens]          997   0.0  
gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens]    37   0.042
gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isofo...    34   0.35 
gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isofo...    34   0.35 
gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapi...    33   0.46 
gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens]             33   0.79 
gi|238908501 sciellin isoform 3 [Homo sapiens]                         32   1.0  
gi|238908499 sciellin isoform 1 [Homo sapiens]                         32   1.0  
gi|238908497 sciellin isoform 2 [Homo sapiens]                         32   1.0  
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    32   1.3  
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    32   1.3  
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho...    31   3.0  
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho...    31   3.0  
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho...    31   3.0  
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho...    31   3.0  
gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]                  31   3.0  
gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]                    31   3.0  
gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]                   31   3.0  
gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens]         31   3.0  
gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens]         31   3.0  
gi|39995084 integrator complex subunit 3 [Homo sapiens]                30   3.9  
gi|25092658 hypothetical protein LOC221927 [Homo sapiens]              30   3.9  
gi|53759134 endonuclease G precursor [Homo sapiens]                    30   6.7  
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H...    30   6.7  
gi|110347463 human immunodeficiency virus type I enhancer bindin...    29   8.7  

>gi|148225659 endonuclease domain containing 1 [Homo sapiens]
          Length = 500

 Score =  997 bits (2578), Expect = 0.0
 Identities = 500/500 (100%), Positives = 500/500 (100%)

Query: 1   MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE 60
           MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE
Sbjct: 1   MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE 60

Query: 61  GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS 120
           GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS
Sbjct: 61  GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS 120

Query: 121 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS 180
           VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS
Sbjct: 121 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS 180

Query: 181 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT 240
           LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT
Sbjct: 181 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT 240

Query: 241 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK 300
           RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK
Sbjct: 241 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK 300

Query: 301 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF 360
           SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF
Sbjct: 301 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF 360

Query: 361 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL 420
           LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL
Sbjct: 361 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL 420

Query: 421 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV 480
           KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV
Sbjct: 421 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV 480

Query: 481 VFSVCKRIGYKVTFDNSGEL 500
           VFSVCKRIGYKVTFDNSGEL
Sbjct: 481 VFSVCKRIGYKVTFDNSGEL 500


>gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens]
          Length = 719

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 255 QKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMV------QSQKSSSPLSST 308
           + +LP  P L QN CG+ EQ +EK + I E +     EER         S+      SS 
Sbjct: 322 EPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDWHSKTKDFQESSI 381

Query: 309 RSKRSTLL---PPEASEGSSS 326
           +S +  LL    P  S G SS
Sbjct: 382 KSLKEKLLLEEEPTTSHGQSS 402


>gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isoform
           2 precursor [Homo sapiens]
          Length = 318

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)

Query: 129 ALNTDYLDSDYQRGQLYPF---SLSSDVQVATFTLTNSAPMTQSFQER-WYVNLHSLMDR 184
           A N DY+ S + RG + P      SS     TF L+N  P  Q F     Y N   +  R
Sbjct: 76  AFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVP--QDFDNNSGYWNRIEMYCR 133

Query: 185 ALTPQCGSGEDLYILTG--TVPS---------DYRV--KDKVAVPEFVW 220
            LT +    ED+++++G  T+P           Y+V  +D VAVP  ++
Sbjct: 134 ELTERF---EDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLY 179


>gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isoform
           1 precursor [Homo sapiens]
          Length = 368

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)

Query: 129 ALNTDYLDSDYQRGQLYPF---SLSSDVQVATFTLTNSAPMTQSFQER-WYVNLHSLMDR 184
           A N DY+ S + RG + P      SS     TF L+N  P  Q F     Y N   +  R
Sbjct: 126 AFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVP--QDFDNNSGYWNRIEMYCR 183

Query: 185 ALTPQCGSGEDLYILTG--TVPS---------DYRV--KDKVAVPEFVW 220
            LT +    ED+++++G  T+P           Y+V  +D VAVP  ++
Sbjct: 184 ELTERF---EDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLY 229


>gi|195947382 Rab interacting lysosomal protein-like 1 [Homo
           sapiens]
          Length = 403

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 22/79 (27%)

Query: 238 KHTRDSDIIEDVMVKDLQKLLP----------------------FNPQLFQNNCGETEQD 275
           KH ++ +++EDV   + Q LL                       F+ + FQ + G +E++
Sbjct: 100 KHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSHKDVNFSEEEFQKHEGMSERE 159

Query: 276 TEKMKKILEVVNQIQDEER 294
            + MKK+ EVV++ +DE R
Sbjct: 160 RQVMKKLKEVVDKQRDEIR 178


>gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens]
          Length = 694

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 207 YRVKDKVAVPEFVWLAACCAVPGGGW--AMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQL 264
           YR+ DK+     +         GGGW    GF+       I++   ++  QK+L F   +
Sbjct: 242 YRLGDKILFIRMLHGKHVMVRVGGGWDTLQGFLLKYDPCRILQFATLE--QKILAFQKGV 299

Query: 265 FQNNCGETEQDTEKMKKI--LEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASE 322
              +  ++   T +  ++  L  VN  Q      Q+ K S P+S  +SK     PP A  
Sbjct: 300 SNESVPDSPARTPQPPEMNPLSAVNMFQK-----QNSKPSVPVSIPKSKEKQGRPPGALV 354

Query: 323 GSSSFLGKLMG 333
            +SS  G  +G
Sbjct: 355 PASSLKGGNLG 365


>gi|238908501 sciellin isoform 3 [Homo sapiens]
          Length = 646

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302
           +DL KL+  NP++F NN  +  QD   + K+   V   NQ QD + +++ + S+
Sbjct: 444 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 495


>gi|238908499 sciellin isoform 1 [Homo sapiens]
          Length = 688

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302
           +DL KL+  NP++F NN  +  QD   + K+   V   NQ QD + +++ + S+
Sbjct: 486 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 537


>gi|238908497 sciellin isoform 2 [Homo sapiens]
          Length = 668

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302
           +DL KL+  NP++F NN  +  QD   + K+   V   NQ QD + +++ + S+
Sbjct: 466 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 517


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
            sapiens]
          Length = 1843

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 271  ETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSK 311
            +  Q+ + +KK  E + Q QDEERMVQ   SS P+S   +K
Sbjct: 992  QLRQELKTVKKNYEALKQRQDEERMVQ---SSPPISGEDNK 1029


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
            sapiens]
          Length = 1870

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 271  ETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSK 311
            +  Q+ + +KK  E + Q QDEERMVQ   SS P+S   +K
Sbjct: 991  QLRQELKTVKKNYEALKQRQDEERMVQ---SSPPISGEDNK 1028


>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
            sapiens]
          Length = 1972

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 272  TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324
            T+   +K KK+ E++ Q++DE +M +  K  +   + R K+      EA E S
Sbjct: 1841 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1893


>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
            sapiens]
          Length = 1979

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 272  TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324
            T+   +K KK+ E++ Q++DE +M +  K  +   + R K+      EA E S
Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1900


>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
            sapiens]
          Length = 1945

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 272  TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324
            T+   +K KK+ E++ Q++DE +M +  K  +   + R K+      EA E S
Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1900


>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
            sapiens]
          Length = 1938

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 272  TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324
            T+   +K KK+ E++ Q++DE +M +  K  +   + R K+      EA E S
Sbjct: 1841 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1893


>gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
          Length = 461

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 28  EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62
           +AGF   D FF  G+ P        + IC+ AEGA
Sbjct: 238 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 272


>gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]
          Length = 459

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 28  EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62
           +AGF   D FF  G+ P        + IC+ AEGA
Sbjct: 275 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 309


>gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]
          Length = 498

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 28  EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62
           +AGF   D FF  G+ P        + IC+ AEGA
Sbjct: 275 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 309


>gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens]
          Length = 424

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 232 WAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQD 291
           W  GF+  T      ED+M K  QK +   P  F   CG   + +E ++K L+VV  +  
Sbjct: 333 WLYGFLPWTNCLPNTEDIM-KQKQKFVD-KPGPFVGPCGHWIRPSETLQKYLKVVMALTY 390

Query: 292 EER 294
           EE+
Sbjct: 391 EEK 393


>gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens]
          Length = 474

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 232 WAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQD 291
           W  GF+  T      ED+M K  QK +   P  F   CG   + +E ++K L+VV  +  
Sbjct: 383 WLYGFLPWTNCLPNTEDIM-KQKQKFVD-KPGPFVGPCGHWIRPSETLQKYLKVVMALTY 440

Query: 292 EER 294
           EE+
Sbjct: 441 EEK 443


>gi|39995084 integrator complex subunit 3 [Homo sapiens]
          Length = 1042

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 263  QLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASE 322
            Q  Q +C E  +   K   +  +  + +D        +  + LSS RS+++   PP A E
Sbjct: 952  QHVQASCDEAHK--MKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEE 1009

Query: 323  GSSS 326
             S S
Sbjct: 1010 ESGS 1013


>gi|25092658 hypothetical protein LOC221927 [Homo sapiens]
          Length = 821

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 56  CQRAEGAERFATLYSTRDRIPVYSAFRAPRPAPGGAE-----QRWLVEPQIDDPNSNLEE 110
           C R    +    L   RD+I  YS+ R  R +P  A       RW    Q   P     E
Sbjct: 711 CDRPVAQKSCDLLLFLRDKIASYSSLREARGSPNTASAEATLPRWRAGEQAQPPGDQEPE 770

Query: 111 AINEAEAITSVNSLGSKQALNTDYLDSDYQ 140
           A+        +  L S  A ++D+++   Q
Sbjct: 771 AVLAMLRSLDLEGLRSTLAESSDHVEKSPQ 800


>gi|53759134 endonuclease G precursor [Homo sapiens]
          Length = 297

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 128 QALNTDYLDSDYQRGQLYPFS---LSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDR 184
           +A N DY  S + RG L   +    S      TF L+N AP      +  + NL     R
Sbjct: 126 RATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSR 184

Query: 185 ALTPQCGSGEDLYILTG 201
           +LT    S +++Y+ TG
Sbjct: 185 SLT---RSYQNVYVCTG 198


>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
           sapiens]
          Length = 1043

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 220 WLAACCAVPGGGWAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCG 270
           W A C     G W+M F  +  D++ IE + V  +  L  FN     N+CG
Sbjct: 480 WRALCSLAIEGLWSMNFTFNKEDTE-IEGLEVPFIDSLYEFNILQKINDCG 529


>gi|110347463 human immunodeficiency virus type I enhancer binding
            protein 2 [Homo sapiens]
          Length = 2446

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 12/62 (19%)

Query: 243  SDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQKSS 302
            SD  ED  + + Q+L       FQ+   ++E D +++      +    DEE M+ S+ SS
Sbjct: 1987 SDSCEDTQMTEYQRL-------FQSKSTDSEPDKDRLD-----IPSCMDEECMLPSEPSS 2034

Query: 303  SP 304
            SP
Sbjct: 2035 SP 2036


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,590,598
Number of Sequences: 37866
Number of extensions: 831091
Number of successful extensions: 2495
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2470
Number of HSP's gapped (non-prelim): 30
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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