BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|148225659 endonuclease domain containing 1 [Homo sapiens] (500 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|148225659 endonuclease domain containing 1 [Homo sapiens] 997 0.0 gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens] 37 0.042 gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isofo... 34 0.35 gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isofo... 34 0.35 gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapi... 33 0.46 gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens] 33 0.79 gi|238908501 sciellin isoform 3 [Homo sapiens] 32 1.0 gi|238908499 sciellin isoform 1 [Homo sapiens] 32 1.0 gi|238908497 sciellin isoform 2 [Homo sapiens] 32 1.0 gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 32 1.3 gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 32 1.3 gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 31 3.0 gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 31 3.0 gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 31 3.0 gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 31 3.0 gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens] 31 3.0 gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens] 31 3.0 gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens] 31 3.0 gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens] 31 3.0 gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens] 31 3.0 gi|39995084 integrator complex subunit 3 [Homo sapiens] 30 3.9 gi|25092658 hypothetical protein LOC221927 [Homo sapiens] 30 3.9 gi|53759134 endonuclease G precursor [Homo sapiens] 30 6.7 gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H... 30 6.7 gi|110347463 human immunodeficiency virus type I enhancer bindin... 29 8.7 >gi|148225659 endonuclease domain containing 1 [Homo sapiens] Length = 500 Score = 997 bits (2578), Expect = 0.0 Identities = 500/500 (100%), Positives = 500/500 (100%) Query: 1 MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE 60 MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE Sbjct: 1 MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE 60 Query: 61 GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS 120 GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS Sbjct: 61 GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS 120 Query: 121 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS 180 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS Sbjct: 121 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS 180 Query: 181 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT 240 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT Sbjct: 181 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT 240 Query: 241 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK 300 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK Sbjct: 241 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK 300 Query: 301 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF 360 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF Sbjct: 301 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF 360 Query: 361 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL 420 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL Sbjct: 361 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL 420 Query: 421 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV 480 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV Sbjct: 421 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV 480 Query: 481 VFSVCKRIGYKVTFDNSGEL 500 VFSVCKRIGYKVTFDNSGEL Sbjct: 481 VFSVCKRIGYKVTFDNSGEL 500 >gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens] Length = 719 Score = 37.0 bits (84), Expect = 0.042 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 255 QKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMV------QSQKSSSPLSST 308 + +LP P L QN CG+ EQ +EK + I E + EER S+ SS Sbjct: 322 EPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDWHSKTKDFQESSI 381 Query: 309 RSKRSTLL---PPEASEGSSS 326 +S + LL P S G SS Sbjct: 382 KSLKEKLLLEEEPTTSHGQSS 402 >gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isoform 2 precursor [Homo sapiens] Length = 318 Score = 33.9 bits (76), Expect = 0.35 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%) Query: 129 ALNTDYLDSDYQRGQLYPF---SLSSDVQVATFTLTNSAPMTQSFQER-WYVNLHSLMDR 184 A N DY+ S + RG + P SS TF L+N P Q F Y N + R Sbjct: 76 AFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVP--QDFDNNSGYWNRIEMYCR 133 Query: 185 ALTPQCGSGEDLYILTG--TVPS---------DYRV--KDKVAVPEFVW 220 LT + ED+++++G T+P Y+V +D VAVP ++ Sbjct: 134 ELTERF---EDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLY 179 >gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isoform 1 precursor [Homo sapiens] Length = 368 Score = 33.9 bits (76), Expect = 0.35 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%) Query: 129 ALNTDYLDSDYQRGQLYPF---SLSSDVQVATFTLTNSAPMTQSFQER-WYVNLHSLMDR 184 A N DY+ S + RG + P SS TF L+N P Q F Y N + R Sbjct: 126 AFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVP--QDFDNNSGYWNRIEMYCR 183 Query: 185 ALTPQCGSGEDLYILTG--TVPS---------DYRV--KDKVAVPEFVW 220 LT + ED+++++G T+P Y+V +D VAVP ++ Sbjct: 184 ELTERF---EDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLY 229 >gi|195947382 Rab interacting lysosomal protein-like 1 [Homo sapiens] Length = 403 Score = 33.5 bits (75), Expect = 0.46 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 22/79 (27%) Query: 238 KHTRDSDIIEDVMVKDLQKLLP----------------------FNPQLFQNNCGETEQD 275 KH ++ +++EDV + Q LL F+ + FQ + G +E++ Sbjct: 100 KHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSHKDVNFSEEEFQKHEGMSERE 159 Query: 276 TEKMKKILEVVNQIQDEER 294 + MKK+ EVV++ +DE R Sbjct: 160 RQVMKKLKEVVDKQRDEIR 178 >gi|28372563 growth arrest-specific 2 like 3 [Homo sapiens] Length = 694 Score = 32.7 bits (73), Expect = 0.79 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%) Query: 207 YRVKDKVAVPEFVWLAACCAVPGGGW--AMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQL 264 YR+ DK+ + GGGW GF+ I++ ++ QK+L F + Sbjct: 242 YRLGDKILFIRMLHGKHVMVRVGGGWDTLQGFLLKYDPCRILQFATLE--QKILAFQKGV 299 Query: 265 FQNNCGETEQDTEKMKKI--LEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASE 322 + ++ T + ++ L VN Q Q+ K S P+S +SK PP A Sbjct: 300 SNESVPDSPARTPQPPEMNPLSAVNMFQK-----QNSKPSVPVSIPKSKEKQGRPPGALV 354 Query: 323 GSSSFLGKLMG 333 +SS G +G Sbjct: 355 PASSLKGGNLG 365 >gi|238908501 sciellin isoform 3 [Homo sapiens] Length = 646 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302 +DL KL+ NP++F NN + QD + K+ V NQ QD + +++ + S+ Sbjct: 444 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 495 >gi|238908499 sciellin isoform 1 [Homo sapiens] Length = 688 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302 +DL KL+ NP++F NN + QD + K+ V NQ QD + +++ + S+ Sbjct: 486 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 537 >gi|238908497 sciellin isoform 2 [Homo sapiens] Length = 668 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 252 KDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVV---NQIQDEERMVQSQKSS 302 +DL KL+ NP++F NN + QD + K+ V NQ QD + +++ + S+ Sbjct: 466 QDLDKLIKVNPEIFTNN--QRNQDLANLIKVNPAVIRNNQSQDLDNLIKVKPSA 517 >gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sapiens] Length = 1843 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Query: 271 ETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSK 311 + Q+ + +KK E + Q QDEERMVQ SS P+S +K Sbjct: 992 QLRQELKTVKKNYEALKQRQDEERMVQ---SSPPISGEDNK 1029 >gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo sapiens] Length = 1870 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Query: 271 ETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSK 311 + Q+ + +KK E + Q QDEERMVQ SS P+S +K Sbjct: 991 QLRQELKTVKKNYEALKQRQDEERMVQ---SSPPISGEDNK 1028 >gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo sapiens] Length = 1972 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 272 TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324 T+ +K KK+ E++ Q++DE +M + K + + R K+ EA E S Sbjct: 1841 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1893 >gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo sapiens] Length = 1979 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 272 TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324 T+ +K KK+ E++ Q++DE +M + K + + R K+ EA E S Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1900 >gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo sapiens] Length = 1945 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 272 TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324 T+ +K KK+ E++ Q++DE +M + K + + R K+ EA E S Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1900 >gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo sapiens] Length = 1938 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 272 TEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGS 324 T+ +K KK+ E++ Q++DE +M + K + + R K+ EA E S Sbjct: 1841 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEES 1893 >gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens] Length = 461 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 28 EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62 +AGF D FF G+ P + IC+ AEGA Sbjct: 238 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 272 >gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens] Length = 459 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 28 EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62 +AGF D FF G+ P + IC+ AEGA Sbjct: 275 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 309 >gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens] Length = 498 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 28 EAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGA 62 +AGF D FF G+ P + IC+ AEGA Sbjct: 275 DAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGA 309 >gi|71164888 vaccinia related kinase 3 isoform 2 [Homo sapiens] Length = 424 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 232 WAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQD 291 W GF+ T ED+M K QK + P F CG + +E ++K L+VV + Sbjct: 333 WLYGFLPWTNCLPNTEDIM-KQKQKFVD-KPGPFVGPCGHWIRPSETLQKYLKVVMALTY 390 Query: 292 EER 294 EE+ Sbjct: 391 EEK 393 >gi|71164886 vaccinia related kinase 3 isoform 1 [Homo sapiens] Length = 474 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 232 WAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQD 291 W GF+ T ED+M K QK + P F CG + +E ++K L+VV + Sbjct: 383 WLYGFLPWTNCLPNTEDIM-KQKQKFVD-KPGPFVGPCGHWIRPSETLQKYLKVVMALTY 440 Query: 292 EER 294 EE+ Sbjct: 441 EEK 443 >gi|39995084 integrator complex subunit 3 [Homo sapiens] Length = 1042 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 263 QLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASE 322 Q Q +C E + K + + + +D + + LSS RS+++ PP A E Sbjct: 952 QHVQASCDEAHK--MKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEE 1009 Query: 323 GSSS 326 S S Sbjct: 1010 ESGS 1013 >gi|25092658 hypothetical protein LOC221927 [Homo sapiens] Length = 821 Score = 30.4 bits (67), Expect = 3.9 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 56 CQRAEGAERFATLYSTRDRIPVYSAFRAPRPAPGGAE-----QRWLVEPQIDDPNSNLEE 110 C R + L RD+I YS+ R R +P A RW Q P E Sbjct: 711 CDRPVAQKSCDLLLFLRDKIASYSSLREARGSPNTASAEATLPRWRAGEQAQPPGDQEPE 770 Query: 111 AINEAEAITSVNSLGSKQALNTDYLDSDYQ 140 A+ + L S A ++D+++ Q Sbjct: 771 AVLAMLRSLDLEGLRSTLAESSDHVEKSPQ 800 >gi|53759134 endonuclease G precursor [Homo sapiens] Length = 297 Score = 29.6 bits (65), Expect = 6.7 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 128 QALNTDYLDSDYQRGQLYPFS---LSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDR 184 +A N DY S + RG L + S TF L+N AP + + NL R Sbjct: 126 RATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSR 184 Query: 185 ALTPQCGSGEDLYILTG 201 +LT S +++Y+ TG Sbjct: 185 SLT---RSYQNVYVCTG 198 >gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo sapiens] Length = 1043 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 220 WLAACCAVPGGGWAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCG 270 W A C G W+M F + D++ IE + V + L FN N+CG Sbjct: 480 WRALCSLAIEGLWSMNFTFNKEDTE-IEGLEVPFIDSLYEFNILQKINDCG 529 >gi|110347463 human immunodeficiency virus type I enhancer binding protein 2 [Homo sapiens] Length = 2446 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 12/62 (19%) Query: 243 SDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQKSS 302 SD ED + + Q+L FQ+ ++E D +++ + DEE M+ S+ SS Sbjct: 1987 SDSCEDTQMTEYQRL-------FQSKSTDSEPDKDRLD-----IPSCMDEECMLPSEPSS 2034 Query: 303 SP 304 SP Sbjct: 2035 SP 2036 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,590,598 Number of Sequences: 37866 Number of extensions: 831091 Number of successful extensions: 2495 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 2470 Number of HSP's gapped (non-prelim): 30 length of query: 500 length of database: 18,247,518 effective HSP length: 106 effective length of query: 394 effective length of database: 14,233,722 effective search space: 5608086468 effective search space used: 5608086468 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.