Guide to the Human Genome
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Name: C7orf27 Sequence: fasta or formatted (821aa) NCBI GI: 25092658
Description:

hypothetical protein LOC221927

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         94           2
 C cysteine            3.7         30           1
 D aspartate           5.0         41           2
 E glutamate           5.5         45           2
 F phenylalanine       3.5         29           1
 G glycine             6.8         56           2
 H histidine           2.4         20           1
 I isoleucine          1.0          8           1
 K lysine              1.8         15           2
 L leucine            16.4        135           3
 M methionine          1.0          8           1
 N asparagine          0.4          3           1
 P proline             7.2         59           2
 Q glutamine           6.5         53           2
 R arginine            5.0         41           2
 S serine              8.0         66           3
 T threonine           5.4         44           3
 V valine              6.7         55           2
 W tryptophan          1.7         14           1
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC221927 
SPAG6                 0.008   sperm associated antigen 6 isoform 1 
SPAG6                 0.008   sperm associated antigen 6 isoform 2 
DAB2IP                0.007   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.007   disabled homolog 2 interacting protein isoform 1 [Ho...
NCAPD2                0.006   non-SMC condensin I complex, subunit D2 
LOC100293296          0.006   PREDICTED: hypothetical protein 
TTC31                 0.005   tetratricopeptide repeat domain 31 
NCAPD3                0.005   non-SMC condensin II complex, subunit D3 
NUP205                0.005   nucleoporin 205kDa 
IPO5                  0.004   importin 5 
RANBP6                0.004   RAN binding protein 6 
SRCAP                 0.004   Snf2-related CBP activator protein 
ADAMTS13              0.004   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.004   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.004   ADAM metallopeptidase with thrombospondin type 1 mot...
STK36                 0.004   serine/threonine kinase 36 
ILF2                  0.004   interleukin enhancer binding factor 2 
GCN1L1                0.003   GCN1 general control of amino-acid synthesis 1-like ...
ENDOD1                0.003   endonuclease domain containing 1 
AKAP12                0.003   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.003   A kinase (PRKA) anchor protein 12 isoform 2 
BAG3                  0.003   BCL2-associated athanogene 3 
SYT13                 0.003   synaptotagmin XIII 
KRTAP12-4             0.003   keratin associated protein 12-4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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