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Search of human proteins with 147901462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|147901462 brain specific homeobox [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|147901462 brain specific homeobox [Homo sapiens] 483 e-137
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 95 6e-20
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 91 1e-18
gi|89257348 homeo box HB9 [Homo sapiens] 90 2e-18
gi|4504465 homeobox B2 [Homo sapiens] 83 2e-16
gi|118582284 msh homeobox 1 [Homo sapiens] 82 5e-16
gi|11386181 H2.0-like homeobox [Homo sapiens] 82 5e-16
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 81 7e-16
gi|84570137 homeobox B3 [Homo sapiens] 81 9e-16
gi|4885187 distal-less homeobox 5 [Homo sapiens] 80 1e-15
gi|18959212 GS homeobox 2 [Homo sapiens] 80 1e-15
gi|24497526 homeobox B1 [Homo sapiens] 80 1e-15
gi|157743259 H6 family homeobox 3 [Homo sapiens] 80 2e-15
gi|33457326 GS homeobox 1 [Homo sapiens] 80 2e-15
gi|4885185 distal-less homeobox 3 [Homo sapiens] 79 3e-15
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 79 3e-15
gi|10140847 homeobox A2 [Homo sapiens] 79 3e-15
gi|4758168 distal-less homeobox 2 [Homo sapiens] 79 3e-15
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 79 4e-15
gi|70608170 H6 family homeobox 2 [Homo sapiens] 77 1e-14
gi|226437602 NK1 homeobox 2 [Homo sapiens] 77 2e-14
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 77 2e-14
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 77 2e-14
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 77 2e-14
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 77 2e-14
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 77 2e-14
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 77 2e-14
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 76 2e-14
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 76 2e-14
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 76 2e-14
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 483 bits (1242), Expect = e-137
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMP 60
MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMP
Sbjct: 1 MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMP 60
Query: 61 TPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDS 120
TPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDS
Sbjct: 61 TPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDS 120
Query: 121 QLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPD 180
QLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPD
Sbjct: 121 QLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPD 180
Query: 181 GPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDEGELGSGPHVL 233
GPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDEGELGSGPHVL
Sbjct: 181 GPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDEGELGSGPHVL 233
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 94.7 bits (234), Expect = 6e-20
Identities = 82/247 (33%), Positives = 111/247 (44%), Gaps = 56/247 (22%)
Query: 16 RPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHAHH---- 71
R SF IE+IL P P + AP A++ A+ LL +G LLA H
Sbjct: 25 RYRSFMIEEILTEPPGP-KGAAP---AAAAAAAGELLKFG-----VQALLAARPFHSHLA 75
Query: 72 ---------------PLHKGDHHHPYFLTTSGMPVPALFPH-PQHAELPGK--------- 106
PL G+P A PH P +L GK
Sbjct: 76 VLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEP 135
Query: 107 ---HCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRM 163
+ R++RTVF++ QL GLEKRFE Q+YLSTP+R++LA +L LS+ QVKTW+QNRRM
Sbjct: 136 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 195
Query: 164 KHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDE 223
K KK + + + P P+G P+ + T+ + LTE E D
Sbjct: 196 KWKKIVLQG----GGLESPTKPKGRPKKNSIPTSEQ-----------LTEQERAKDAEKP 240
Query: 224 GELGSGP 230
E+ P
Sbjct: 241 AEVPGEP 247
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Query: 111 RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLR 170
R++RT+F++ QL GLEK+F+ Q+YLSTP+R++LA +L L++ QVKTW+QNRRMK KK +
Sbjct: 134 RRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL 193
Query: 171 KSQDEPKAPDGPESPEGSPRGSEAATAAE 199
K E P P+G P+ + T+ E
Sbjct: 194 KGGQE-----APTKPKGRPKKNSIPTSEE 217
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 89.7 bits (221), Expect = 2e-18
Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 18/175 (10%)
Query: 42 ASSLASRVPLLDYGYPLMPTPTLLAPHAHHP-----LHKGDHHHPYFL--TTSGMPVPAL 94
A++LA + P L Y YP + H HP L G +L +T+GM +P +
Sbjct: 172 AAALAGQHPALSYSYPQVQ-----GAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKM 226
Query: 95 --FPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSET 152
F + L GK CRR RT F+ QL LE +F++ +YLS P+R E+AT+L L+ET
Sbjct: 227 PDFNSQAQSNLLGK-CRR--PRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTET 283
Query: 153 QVKTWFQNRRMKHKKQLR-KSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPA 206
QVK WFQNRRMK K+ + K Q +A G+ +G AE L PA
Sbjct: 284 QVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPA 338
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 83.2 bits (204), Expect = 2e-16
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 111 RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLR 170
R+ RT ++++QL LEK F +YL P RVE+A L L+E QVK WFQNRRMKHK+Q +
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
Query: 171 KSQ---DEPKAP-------DGPESPEGSPRGSEAATAA 198
+ EP P D E P SP G A+ AA
Sbjct: 204 HREPPDGEPACPGALEDICDPAEEPAASPGGPSASRAA 241
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 81.6 bits (200), Expect = 5e-16
Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 86 TSGMPVPALFPHPQHAELPG-----KHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPER 140
T M P P P P KH RK RT F+ +QL LE++F ++YLS ER
Sbjct: 143 TPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202
Query: 141 VELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGS-----PRGSEAA 195
E +++LSL+ETQVK WFQNRR K K+ ++ K P P + P G AA
Sbjct: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAA 262
Query: 196 TAAEARLSL--PAGPF 209
AA A SL +GPF
Sbjct: 263 VAAAAGASLYGASGPF 278
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 81.6 bits (200), Expect = 5e-16
Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 22/158 (13%)
Query: 57 PLMPTPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRK-ART 115
P+ +L+P +P + H F T P L +P + R+R +R
Sbjct: 229 PINEASAILSPLNSNPRNSVQHQ---FQDTFPGPYAVLTKDT----MPQTYKRKRSWSRA 281
Query: 116 VFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMK--HKKQLRKSQ 173
VFS+ Q GLEKRFEIQ+Y++ P+R +LA L L++ QVK WFQNRRMK H K+ + +
Sbjct: 282 VFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQK 341
Query: 174 DEPK-----------APDGPESPEGSPRGSEAATAAEA 200
D+ K A DG E E SP SE +E+
Sbjct: 342 DKDKEAGEKPSGGAPAADG-EQDERSPSRSEGEAESES 378
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 81.3 bits (199), Expect = 7e-16
Identities = 67/205 (32%), Positives = 89/205 (43%), Gaps = 55/205 (26%)
Query: 6 TSPLHPASSQRPTSFFIEDIL------------------------------LHKPKPLRE 35
T L PA PT F+IEDIL +++P P+
Sbjct: 21 TPLLQPA---HPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTSLVSPYRTPVYEPTPIHP 77
Query: 36 VAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHAHHPLHKGDHHHPYFLTTSGMPV--PA 93
H A++LA+ +G PL P P + + H L H P G P+
Sbjct: 78 AFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLR----HDPL-----GKPLLWSP 128
Query: 94 LFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQ 153
P H +R+ + FS+ Q LEK+FE Q+YLS PER LA L LSE Q
Sbjct: 129 FLQRPLH--------KRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 180
Query: 154 VKTWFQNRRMKHKKQLRKSQDEPKA 178
VKTWFQNRR K + R Q+ P++
Sbjct: 181 VKTWFQNRRAKWR---RLKQENPQS 202
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 80.9 bits (198), Expect = 9e-16
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 104 PGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRM 163
PG +R ART ++ +QL LEK F RYL P RVE+A L+LSE Q+K WFQNRRM
Sbjct: 183 PGSAASKR-ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRM 241
Query: 164 KHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATA 197
K+KK +K++ + GP SP GSP +TA
Sbjct: 242 KYKKD-QKAKGLASSSGGP-SPAGSPPQPMQSTA 273
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 80.5 bits (197), Expect = 1e-15
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 98 PQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTW 157
P+ + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA +L L++TQVK W
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184
Query: 158 FQNRRMKHKKQLRK---------SQDEPKAPDGPESPE-GSPRGS 192
FQN+R K KK ++ S +P A + P+SP P+GS
Sbjct: 185 FQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGS 229
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 80.1 bits (196), Expect = 1e-15
Identities = 55/167 (32%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 46 ASRVPLLDYGYPLMPTPTLLAP---HAHHPLHKGDHHHPYF------------LTTSGMP 90
A +PLL + P P HAHH H HHH + +
Sbjct: 99 AGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAA 158
Query: 91 VPALFPHPQH------------AELPGKHC------------RRRKARTVFSDSQLSGLE 126
A HPQH A+ HC ++ RT F+ +QL LE
Sbjct: 159 AAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELE 218
Query: 127 KRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQ 173
+ F YLS R+E+AT L+LSE QVK WFQNRR+KHKK+ + +Q
Sbjct: 219 REFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ 265
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 80.1 bits (196), Expect = 1e-15
Identities = 43/88 (48%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 114 RTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQ 173
RT F+ QL+ LEK F +YLS RVE+A L L+ETQVK WFQNRRMK KK+ R+
Sbjct: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEG 266
Query: 174 DEPKAPDG-PESPEGSPRGSEAATAAEA 200
P AP G P+ G T+ EA
Sbjct: 267 RVPPAPPGCPKEAAGDASDQSTCTSPEA 294
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 79.7 bits (195), Expect = 2e-15
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Query: 101 AELPGKH--CRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWF 158
AE P K CR++K RTVFS SQ+ LE F+++RYLS+ ER LA +L L+ETQVK WF
Sbjct: 216 AESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWF 275
Query: 159 QNRRMKHKKQL 169
QNRR K K+QL
Sbjct: 276 QNRRNKWKRQL 286
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 79.7 bits (195), Expect = 2e-15
Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 49 VPLLDYGYPLMPTPTLLAP--HAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGK 106
+PLL +P + AP H + G H P + +P P +
Sbjct: 76 LPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQF--- 132
Query: 107 HC-----------RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
HC ++ RT F+ +QL LE+ F YLS R+E+AT L+LSE QVK
Sbjct: 133 HCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVK 192
Query: 156 TWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLS-----LPAGP 208
WFQNRR+KHKK+ + S G +P+G + A+ + A+ S LP P
Sbjct: 193 IWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSP 250
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 79.3 bits (194), Expect = 3e-15
Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
P + + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA L L++TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174
Query: 156 TWFQNRRMKHKKQLRKSQ---------DEPKAPDGPESPEGSPRGSEAATAAEARLSLP- 205
WFQNRR K KK + + + A + P SP S +T A AR LP
Sbjct: 175 IWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSH-STPAPARSQLPP 233
Query: 206 -----AGPFVLTEPEDEVDIGDEGELGSGPHV 232
A P L +P + + SGPH+
Sbjct: 234 PLPYSASPSYLDDPTNS---WYHAQNLSGPHL 262
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 104 PGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRM 163
P + + RKART FSD QL+ LE+ FE Q+YLS +R++LA AL+L++TQVKTW+QNRR
Sbjct: 226 PVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRT 285
Query: 164 KHKKQ 168
K K+Q
Sbjct: 286 KWKRQ 290
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 79.0 bits (193), Expect = 3e-15
Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 86 TSGMPVPALFPHPQHAELP-GKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELA 144
T+ PA H + E+ G R+ RT ++++QL LEK F +YL P RVE+A
Sbjct: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
Query: 145 TALSLSETQVKTWFQNRRMKHKK--QLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARL 202
L L+E QVK WFQNRRMKHK+ Q +++Q+ E E E T E L
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQAL 237
Query: 203 SL 204
S+
Sbjct: 238 SV 239
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 79.0 bits (193), Expect = 3e-15
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 98 PQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTW 157
P+ + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA +L L++TQVK W
Sbjct: 140 PEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 199
Query: 158 FQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDE 217
FQNRR K KK + KS + P E P S + A +S PA + P+
Sbjct: 200 FQNRRSKFKK-MWKSGEIPS--------EQHPGASASPPCASPPVSAPAS-WDFGVPQRM 249
Query: 218 VDIGDEGELGSG 229
G G GSG
Sbjct: 250 AGGGGPGSGGSG 261
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 78.6 bits (192), Expect = 4e-15
Identities = 62/163 (38%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 11 PASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTP--TLLAPH 68
PA S+ TS F+ +L KPL AP ++SS G P P P L A
Sbjct: 86 PAQSRTVTSSFLIRDILADCKPLAACAP--YSSS----------GQPAAPEPGGRLAAKA 133
Query: 69 AHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAEL---PGKHCRRRKARTVFSDSQLSGL 125
A K D + S V + P + + RKART F+D QL+ L
Sbjct: 134 AEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQL 193
Query: 126 EKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
E+ FE Q+YLS +R+ELA +L+L++TQVKTW+QNRR K K+Q
Sbjct: 194 ERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 77.0 bits (188), Expect = 1e-14
Identities = 53/152 (34%), Positives = 68/152 (44%), Gaps = 50/152 (32%)
Query: 62 PTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPAL------------------FPHPQHAEL 103
P P H P +G HHP +P P L F P H++
Sbjct: 63 PACFCPDQHGPKEQGPKHHP------PIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDF 116
Query: 104 --------------PGKH------------CRRRKARTVFSDSQLSGLEKRFEIQRYLST 137
PG ++K RTVFS SQ+ LE F+++RYLS+
Sbjct: 117 KEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSS 176
Query: 138 PERVELATALSLSETQVKTWFQNRRMKHKKQL 169
ER LA++L L+ETQVKTWFQNRR K K+QL
Sbjct: 177 SERACLASSLQLTETQVKTWFQNRRNKWKRQL 208
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/96 (43%), Positives = 53/96 (55%)
Query: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
P P+ L + R+ART F+ QL LE +F RYLS ER+ LA +LSL+ETQVK
Sbjct: 149 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 208
Query: 156 TWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRG 191
WFQNRR K KKQ + + G P + G
Sbjct: 209 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 244
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 76.6 bits (187), Expect = 2e-14
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 67/226 (29%)
Query: 38 PDHFASSLASRVPLLDYGYP---LMPTPTLLAPHAHHPLHKGDHHHP--YFLTTSGMPVP 92
P+ S ++ + +++G P + P+P ++ H LH H P + + S P
Sbjct: 7 PESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRP 66
Query: 93 ALFPH----PQHAELP----------------------------------------GKHC 108
+P+ HA P GK
Sbjct: 67 LGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGK 126
Query: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
+ RK RT++S QL L +RF+ +YL+ PER ELA +L L++TQVK WFQN+R K KK
Sbjct: 127 KIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKL 186
Query: 169 LRK----------------SQDEPKAPDG--PESPEGSPRGSEAAT 196
+++ S P P G P S G G A +
Sbjct: 187 MKQGGAALEGSALANGRALSAGSPPVPPGWNPNSSSGKGSGGNAGS 232
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/96 (43%), Positives = 53/96 (55%)
Query: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
P P+ L + R+ART F+ QL LE +F RYLS ER+ LA +LSL+ETQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230
Query: 156 TWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRG 191
WFQNRR K KKQ + + G P + G
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 266
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/96 (43%), Positives = 53/96 (55%)
Query: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
P P+ L + R+ART F+ QL LE +F RYLS ER+ LA +LSL+ETQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230
Query: 156 TWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRG 191
WFQNRR K KKQ + + G P + G
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 266
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/96 (43%), Positives = 53/96 (55%)
Query: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
P P+ L + R+ART F+ QL LE +F RYLS ER+ LA +LSL+ETQVK
Sbjct: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230
Query: 156 TWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRG 191
WFQNRR K KKQ + + G P + G
Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 266
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 76.6 bits (187), Expect = 2e-14
Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 110 RRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169
RRK R +FS +Q+ LE+RF+ QRYLS PER LA++L L+ TQVK WFQNRR K K+Q
Sbjct: 148 RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 207
Query: 170 RKSQDEPKAPDGPESP----------EGSPRGSEAATAAEARLSLPAGPF 209
+ E A P P +G P + +A A A S+ A +
Sbjct: 208 QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAY 257
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
+RRK R +FS +Q+ LE+RF+ QRYLS PER LA+AL L+ TQVK WFQNRR K K+Q
Sbjct: 49 QRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQ 108
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 76.3 bits (186), Expect = 2e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
RRRK R +FS +Q+ LE+RF+ QRYLS PER +LA+ L L+ TQVK WFQNRR K K+Q
Sbjct: 137 RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 196
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 76.3 bits (186), Expect = 2e-14
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 51 LLDYGY--PLMPTPTLLAPHAHHPLHK---GDHHHPYFLTTSGMPVPALFPHPQHAELPG 105
LL Y Y P P + L+ L + G HP L P L P P
Sbjct: 54 LLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEK-PRLSPEPSERRPQA 112
Query: 106 KHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKH 165
+ RK RT++S QL L +RF+ +YL+ PER +LA L L++TQVK WFQN+R K+
Sbjct: 113 PAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKY 172
Query: 166 KKQLRKS 172
KK L+++
Sbjct: 173 KKLLKQN 179
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 76.3 bits (186), Expect = 2e-14
Identities = 48/118 (40%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
R++K RTVFS SQ+ LE F+++RYLS+ ER LA +L L+ETQVK WFQNRR K K+Q
Sbjct: 202 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 261
Query: 169 LRKSQDEPKAPDGPESPEGSPR------------GSEAATAAEARLSLPAGPFVLTEP 214
L + SP G+ R + AA A L P P P
Sbjct: 262 LAAELEAASL-----SPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPP 314
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,194,534
Number of Sequences: 37866
Number of extensions: 617825
Number of successful extensions: 3851
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 3284
Number of HSP's gapped (non-prelim): 647
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.