Search of human proteins with 14702180

Search of human proteins with 14702180

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14702180 eukaryotic translation initiation factor 4H isoform
2 [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14702180 eukaryotic translation initiation factor 4H isoform ...   469   e-133
gi|11559923 eukaryotic translation initiation factor 4H isoform ...   457   e-129
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa...    89   4e-18
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           67   1e-11
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform...    57   1e-08
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    57   1e-08
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         55   4e-08
gi|55956788 nucleolin [Homo sapiens]                                   55   6e-08
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    53   2e-07
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    53   2e-07
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]     53   2e-07
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    52   3e-07
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    52   3e-07
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]      52   3e-07
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...    49   5e-06
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           47   1e-05
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          47   1e-05
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    47   1e-05
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    47   1e-05
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    46   2e-05
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    46   2e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        46   2e-05
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    46   3e-05
gi|9558733 transformer-2 alpha [Homo sapiens]                          46   3e-05
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    45   5e-05
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    45   5e-05
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  45   7e-05
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     44   9e-05
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           44   1e-04
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...    44   1e-04

>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
           [Homo sapiens]
          Length = 228

 Score =  469 bits (1208), Expect = e-133
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA 60
           MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
Sbjct: 1   MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA 60

Query: 61  IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK 120
           IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
Sbjct: 61  IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK 120

Query: 121 QDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREP 180
           QDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREP
Sbjct: 121 QDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREP 180

Query: 181 TEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE 228
           TEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE
Sbjct: 181 TEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPREEVVQKEQE 228


>gi|11559923 eukaryotic translation initiation factor 4H isoform 1
           [Homo sapiens]
          Length = 248

 Score =  457 bits (1177), Expect = e-129
 Identities = 228/248 (91%), Positives = 228/248 (91%), Gaps = 20/248 (8%)

Query: 1   MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA 60
           MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
Sbjct: 1   MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA 60

Query: 61  IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK 120
           IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK
Sbjct: 61  IFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK 120

Query: 121 QDKGGFGFRKGGPDDR--------------------GFRDDFLGGRGGSRPGDRRTGPPM 160
           QDKGGFGFRKGGPDDR                    GFRDDFLGGRGGSRPGDRRTGPPM
Sbjct: 121 QDKGGFGFRKGGPDDRGMGSSRESRGGWDSRDDFNSGFRDDFLGGRGGSRPGDRRTGPPM 180

Query: 161 GSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPRE 220
           GSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPRE
Sbjct: 181 GSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFGGARPRE 240

Query: 221 EVVQKEQE 228
           EVVQKEQE
Sbjct: 241 EVVQKEQE 248


>gi|50053795 eukaryotic translation initiation factor 4B [Homo
           sapiens]
          Length = 611

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 20/147 (13%)

Query: 33  QKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRD-KDTDKFKGFCYVEFDE 91
           +  LP  PPYTA++GNLP++  +  I   F+ L+I +VRL R+  + ++ KGF Y EF++
Sbjct: 87  RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED 146

Query: 92  VDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRP 151
           +DSL  AL+ +   LG+R +RVD+A+ + QDK          DDR F      GR  +R 
Sbjct: 147 LDSLLSALSLNEESLGNRRIRVDVAD-QAQDK--------DRDDRSF------GRDRNRD 191

Query: 152 GDRR----TGPPMGSRFRDGPPLRGSN 174
            D+        P    F D PP RG +
Sbjct: 192 SDKTDTDWRARPATDSFDDYPPRRGDD 218


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 14/140 (10%)

Query: 45  YVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA-LTYD 102
           +VG L F+T +  ++ +F     I  V +V+D++T + +GF +V F+ +D  K+A +  +
Sbjct: 9   FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSR-----PGDRRTG 157
           G  +  R +RVD A G+  D    G+R G    RGF   F GGRG  R      GDR  G
Sbjct: 69  GKSVDGRQIRVDQA-GKSSDNRSRGYRGGSAGGRGF---FRGGRGRGRGFSRGGGDRGYG 124

Query: 158 PPMGSRFRDGPPLRGSNMDF 177
              G+RF       G + D+
Sbjct: 125 ---GNRFESRSGGYGGSRDY 141


>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
           [Homo sapiens]
          Length = 156

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 29  GSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYV 87
           G   ++E   +   T YVGNL F T +  I  +F K   I+ + +  DK      GFC+V
Sbjct: 27  GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86

Query: 88  EFDEVDSLKEALTY-DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGR 146
           E+      + A+ Y +G  L DR +R D   G K+ +     R GG     +R D+  GR
Sbjct: 87  EYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGR 146

Query: 147 GG 148
           GG
Sbjct: 147 GG 148


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 59/209 (28%), Positives = 78/209 (37%), Gaps = 36/209 (17%)

Query: 16  GGGRGSRGSAGG--------------HGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAI 61
           GGGRG RG  GG               GSR   E       T +V  L  N     +   
Sbjct: 245 GGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADY 304

Query: 62  FKDLSIRS---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSL 111
           FK + I           + L  D++T K KG   V FD+  S K A+  +DG       +
Sbjct: 305 FKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 364

Query: 112 RVDIAEGRKQ-DKGGFGFR----KGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGSRFRD 166
           +V  A  R   ++GG   R    +GGP  RG      G  GG R G    G   G + R 
Sbjct: 365 KVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGG-GSGGGGRGGFPSGGGGGGGQQRA 423

Query: 167 G------PPLRGSNMDFREPTEEERAQRP 189
           G      P     N  +R    + +A +P
Sbjct: 424 GDWKCPNPTCENMNFSWRNECNQCKAPKP 452



 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 118 GRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGP 158
           GR  D+GGF   +GG D  GF    +  RG  R  DRR  P
Sbjct: 486 GRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQ-DRRERP 525


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 41  PYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEA 98
           P   ++G L   T +  ++A+F K   I  V L++D++T+K +GF +V F+   D+   A
Sbjct: 7   PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66

Query: 99  LTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPD---DRGFRDDFLGGRGGSRPGDRR 155
              +G  L  ++++V+ A     + G    R+G P     RG      GGRGGS  G  R
Sbjct: 67  RDMNGKSLDGKAIKVEQATKPSFESG----RRGPPPPPRSRGPPRGLRGGRGGS--GGTR 120

Query: 156 TGPPMGSRFRDGPPLRGSNM-DFREPTEEERAQRPRLQLKPRTVATPLNQVANPNSAIFG 214
             P  G    DG      NM   R P   +R   PR    P   + P   V   +S+  G
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVR--SSSGMG 178

Query: 215 GARP 218
           G  P
Sbjct: 179 GRAP 182


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 9/123 (7%)

Query: 29  GSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVE 88
           G R      ++P  T +V  L  +T +  +   F D S+R+ R+V D++T   KGF +V+
Sbjct: 559 GPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF-DGSVRA-RIVTDRETGSSKGFGFVD 616

Query: 89  F---DEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGG 145
           F   ++  + KEA+  DG + G++   V +   + + +GGFG R GG    G R    GG
Sbjct: 617 FNSEEDAKAAKEAME-DGEIDGNK---VTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG 672

Query: 146 RGG 148
           RGG
Sbjct: 673 RGG 675



 Score = 38.5 bits (88), Expect = 0.005
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 30  SRSQKELPTEPP--YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYV 87
           ++ QK   TEP   +  +VGNL FN    ++     D+  ++   V D      + F YV
Sbjct: 293 AKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYV 352

Query: 88  EFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDK 123
           +F+  + L++AL   G  +    ++++  +G+   K
Sbjct: 353 DFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKK 388



 Score = 35.8 bits (81), Expect = 0.031
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 25/129 (19%)

Query: 29  GSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVE 88
           G  S+KE       T    NLP+   Q ++  +F+D +   +RLV  KD  K KG  Y+E
Sbjct: 383 GKDSKKERDAR---TLLAKNLPYKVTQDELKEVFEDAA--EIRLV-SKD-GKSKGIAYIE 435

Query: 89  F-DEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRG 147
           F  E D+ K      G  +  RS+ +                     ++G   D+ GG+ 
Sbjct: 436 FKTEADAEKTFEEKQGTEIDGRSISLYYT-----------------GEKGQNQDYRGGKN 478

Query: 148 GSRPGDRRT 156
            +  G+ +T
Sbjct: 479 STWSGESKT 487



 Score = 30.0 bits (66), Expect = 1.7
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 43  TAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY 101
           T  + NL ++  +  +  +F+  +   V         K KG+ ++EF   +  KEAL + 
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIKVP---QNQNGKSKGYAFIEFASFEDAKEALNSC 543

Query: 102 DGALLGDRSLRVDIAEGR-----KQDKGGFGFRKGGPDD---RGFRDDFLGGRGGSRPGD 153
           +   +  R++R+++   R     +       F KG  +D      ++ F G        D
Sbjct: 544 NKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTD 603

Query: 154 RRTGPPMGSRFRD 166
           R TG   G  F D
Sbjct: 604 RETGSSKGFGFVD 616


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 6/153 (3%)

Query: 41  PYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEA 98
           P   ++G L   T +  ++ +F K   I  V L++D++T+K +GF +V F+   D+   A
Sbjct: 7   PGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAA 66

Query: 99  LTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGP 158
              +G  L  ++++V+ A     ++G  G     P  RG    F  GRGGS  G  R  P
Sbjct: 67  RDMNGKSLDGKAIKVEQATKPSFERGRHG-PPPPPRSRGPPRGFGAGRGGS--GGTRGPP 123

Query: 159 PMGSRFRDGPPLRGSNM-DFREPTEEERAQRPR 190
             G    DG      NM   R P   +R   PR
Sbjct: 124 SRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPR 156


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 6/153 (3%)

Query: 41  PYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEA 98
           P   ++G L   T +  ++ +F K   I  V L++D++T+K +GF +V F+   D+   A
Sbjct: 7   PGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAA 66

Query: 99  LTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGP 158
              +G  L  ++++V+ A     ++G  G     P  RG    F  GRGGS  G  R  P
Sbjct: 67  RDMNGKSLDGKAIKVEQATKPSFERGRHG-PPPPPRSRGPPRGFGAGRGGS--GGTRGPP 123

Query: 159 PMGSRFRDGPPLRGSNM-DFREPTEEERAQRPR 190
             G    DG      NM   R P   +R   PR
Sbjct: 124 SRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPR 156


>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
          Length = 430

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 43  TAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
           + +VGNLP+   +  I+  F D  SI +VR+VRDK T   KGF YV F+  DS+  AL  
Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 347

Query: 102 DGALLGDRSLRV 113
           + + L  R LRV
Sbjct: 348 NNSELMGRKLRV 359



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 32  SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVR-----------------LV 73
           +Q+E   +   T +VGNLP    +  + + FK+   I SVR                 + 
Sbjct: 175 NQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK 234

Query: 74  RDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIA-EGRKQDK 123
           R    D+     YV F E  +  +AL  +GA + D   +RVD+A E   +DK
Sbjct: 235 RKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 286


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 56/202 (27%), Positives = 78/202 (38%), Gaps = 40/202 (19%)

Query: 16  GGGRGSRGSAGGHGSRSQKELPTE--------PPY---------TAYVGNLPFNTVQGDI 58
           GGGRG  GSAG  G  ++   P +        PP            YV  L  +    D+
Sbjct: 262 GGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDL 321

Query: 59  DAIFKDLSIRS---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGD 108
              FK   +           + +  DK+T K KG   V +++  + K A+  +DG     
Sbjct: 322 ADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 381

Query: 109 RSLRVDIAEGR---KQDKGGFGFR---------KGGPDDRGFRDDFLGGRGGSRPGDRRT 156
             L+V +A  +      +GG   R         +GGP   G     +G  GG R GDR  
Sbjct: 382 SKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG-RGGDRGG 440

Query: 157 GPPMGSRFRDGPPLRGSNMDFR 178
            PP G R   G P  G N+  R
Sbjct: 441 FPPRGPRGSRGNPSGGGNVQHR 462



 Score = 30.8 bits (68), Expect = 1.00
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 121 QDKGGFGF-----RKGGPDDRGF-RDDF------LGGRGGSRPGDRRTGPPMGSRFRDGP 168
           Q+ GGF          GPD+RG  R  F       GGRGG R G    G   G     GP
Sbjct: 224 QESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGP 283

Query: 169 PLRGSNMDFREPTEEE 184
              G ++D   P + +
Sbjct: 284 MDEGPDLDLGPPVDPD 299



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 118 GRKQDKGGF-GFRKGGP-DDRGFRDDFLGGRGGSRPG 152
           GR  D+GGF G R+GGP    G   + +GGR G R G
Sbjct: 546 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 582


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 56/202 (27%), Positives = 78/202 (38%), Gaps = 40/202 (19%)

Query: 16  GGGRGSRGSAGGHGSRSQKELPTE--------PPY---------TAYVGNLPFNTVQGDI 58
           GGGRG  GSAG  G  ++   P +        PP            YV  L  +    D+
Sbjct: 318 GGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDL 377

Query: 59  DAIFKDLSIRS---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGD 108
              FK   +           + +  DK+T K KG   V +++  + K A+  +DG     
Sbjct: 378 ADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 437

Query: 109 RSLRVDIAEGR---KQDKGGFGFR---------KGGPDDRGFRDDFLGGRGGSRPGDRRT 156
             L+V +A  +      +GG   R         +GGP   G     +G  GG R GDR  
Sbjct: 438 SKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG-RGGDRGG 496

Query: 157 GPPMGSRFRDGPPLRGSNMDFR 178
            PP G R   G P  G N+  R
Sbjct: 497 FPPRGPRGSRGNPSGGGNVQHR 518



 Score = 30.8 bits (68), Expect = 1.00
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 121 QDKGGFGF-----RKGGPDDRGF-RDDF------LGGRGGSRPGDRRTGPPMGSRFRDGP 168
           Q+ GGF          GPD+RG  R  F       GGRGG R G    G   G     GP
Sbjct: 280 QESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGP 339

Query: 169 PLRGSNMDFREPTEEE 184
              G ++D   P + +
Sbjct: 340 MDEGPDLDLGPPVDPD 355



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 118 GRKQDKGGF-GFRKGGP-DDRGFRDDFLGGRGGSRPG 152
           GR  D+GGF G R+GGP    G   + +GGR G R G
Sbjct: 602 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 638


>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
          Length = 322

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 17/150 (11%)

Query: 45  YVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 102
           ++G LP+   +GDI  +F     I ++ LVRDK T K KGFC++ +++  S   A+  ++
Sbjct: 39  FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGS 162
           G  +  R++RVD     +            P D    DD          G R   P +  
Sbjct: 99  GIKIKGRTIRVDHVSNYR-----------APKDSEEIDDVTRQLQEKGCGARTPSPSLSE 147

Query: 163 RFRDGPPLRGSNMDFRE----PTEEERAQR 188
              D  P +    D +E      E+E+A R
Sbjct: 148 SSEDEKPTKKHKKDKKEKKKKKKEKEKADR 177


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 39  EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKE 97
           EPP   +VG L  +T +  I   F     I ++ L  D  T++ +GFC++ + + + +K+
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289

Query: 98  ALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTG 157
            L      +G     + +A+ ++       +R+     +G R    GGRGG+R   R  G
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKEV------YRQQQQQQKGGRGAAAGGRGGTRGRGRGQG 343

Query: 158 PPMGSRFRD 166
                 F +
Sbjct: 344 QNWNQGFNN 352


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 49/161 (30%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 14  SFGGGRGSRGSAGGH---GSRSQ--KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68
           S GG RG   + GGH   G R+    E       T +V  L        +   FK + I 
Sbjct: 198 SSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGII 257

Query: 69  S---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSLRVDIAEG 118
                     + L  DKDT K KG   V FD+  S K A+  +DG       ++V  A  
Sbjct: 258 KTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATR 317

Query: 119 RKQDKGGFGFRKGGPDDRGFRDDFLGGRGG--SRPGDRRTG 157
           R +   G G   G     G+R     GRGG   R GD ++G
Sbjct: 318 RPEFMRGGGSGGGRRGRGGYR-----GRGGFQGRGGDPKSG 353



 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFG---FRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPP 159
           G   GDR        G   D+GG+G    R G   DRG    + G R G   GDR  G  
Sbjct: 496 GGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGY 555

Query: 160 MGSR 163
            G R
Sbjct: 556 GGDR 559


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 49/161 (30%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 14  SFGGGRGSRGSAGGH---GSRSQ--KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68
           S GG RG   + GGH   G R+    E       T +V  L        +   FK + I 
Sbjct: 201 SSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGII 260

Query: 69  S---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSLRVDIAEG 118
                     + L  DKDT K KG   V FD+  S K A+  +DG       ++V  A  
Sbjct: 261 KTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATR 320

Query: 119 RKQDKGGFGFRKGGPDDRGFRDDFLGGRGG--SRPGDRRTG 157
           R +   G G   G     G+R     GRGG   R GD ++G
Sbjct: 321 RPEFMRGGGSGGGRRGRGGYR-----GRGGFQGRGGDPKSG 356



 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFG---FRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPP 159
           G   GDR        G   D+GG+G    R G   DRG    + G R G   GDR  G  
Sbjct: 499 GGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGY 558

Query: 160 MGSR 163
            G R
Sbjct: 559 GGDR 562


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 43  TAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEF-DEVDSLKEALT 100
           + +VGN+P+   +  +  IF ++ S+ S RLV D++T K KG+ + E+ D+  +L     
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query: 101 YDGALLGDRSLRVDIAEGRK 120
            +G     R+LRVD A   K
Sbjct: 77  LNGREFSGRALRVDNAASEK 96


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 23/193 (11%)

Query: 41  PYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEA 98
           P   ++G L   T +  ++A F K   I  V L++D++T+K +GF +V F+   D+   A
Sbjct: 7   PGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAA 66

Query: 99  LTYDGALLGDRSLRVDIAEGRKQDKGGF-GFRKGGPDDRG-FRDDFLGGRGGSRPGDRRT 156
              +G  L  ++++V      +  K  F   R+G P  R   R  FL G  G   G RR+
Sbjct: 67  RDMNGKSLDGKAIKV-----AQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRS 121

Query: 157 GPPMGSRFRDGPPLRGSNMDF-----REPTEEERAQRPRLQLKPRTVATPLNQVANPNSA 211
            P  G    DG    G   DF     R P   +R   PR    P   A P    + P  +
Sbjct: 122 -PSRGGPDDDG----GYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAP----SGPARS 172

Query: 212 IFGGARPREEVVQ 224
             GG R R   V+
Sbjct: 173 SGGGMRGRALAVR 185


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 41/202 (20%)

Query: 16  GGGRGSRGSAGGHGSRSQKELPTE--------PPY---------TAYVGNLPFNTVQGDI 58
           GGGRG  G AG  G  ++   P +        PP            YV  L  +    D+
Sbjct: 318 GGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDL 376

Query: 59  DAIFKDLSIRS---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGD 108
              FK   +           + +  DK+T K KG   V +++  + K A+  +DG     
Sbjct: 377 ADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 436

Query: 109 RSLRVDIAEGR---KQDKGGFGFR---------KGGPDDRGFRDDFLGGRGGSRPGDRRT 156
             L+V +A  +      +GG   R         +GGP   G     +G  GG R GDR  
Sbjct: 437 SKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG-RGGDRGG 495

Query: 157 GPPMGSRFRDGPPLRGSNMDFR 178
            PP G R   G P  G N+  R
Sbjct: 496 FPPRGPRGSRGNPSGGGNVQHR 517



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 118 GRKQDKGGF-GFRKGGP-DDRGFRDDFLGGRGGSRPG 152
           GR  D+GGF G R+GGP    G   + +GGR G R G
Sbjct: 601 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 637


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 41/202 (20%)

Query: 16  GGGRGSRGSAGGHGSRSQKELPTE--------PPY---------TAYVGNLPFNTVQGDI 58
           GGGRG  G AG  G  ++   P +        PP            YV  L  +    D+
Sbjct: 324 GGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDL 382

Query: 59  DAIFKDLSIRS---------VRLVRDKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGD 108
              FK   +           + +  DK+T K KG   V +++  + K A+  +DG     
Sbjct: 383 ADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 442

Query: 109 RSLRVDIAEGR---KQDKGGFGFR---------KGGPDDRGFRDDFLGGRGGSRPGDRRT 156
             L+V +A  +      +GG   R         +GGP   G     +G  GG R GDR  
Sbjct: 443 SKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG-RGGDRGG 501

Query: 157 GPPMGSRFRDGPPLRGSNMDFR 178
            PP G R   G P  G N+  R
Sbjct: 502 FPPRGPRGSRGNPSGGGNVQHR 523



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 118 GRKQDKGGF-GFRKGGP-DDRGFRDDFLGGRGGSRPG 152
           GR  D+GGF G R+GGP    G   + +GGR G R G
Sbjct: 607 GRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 643


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 43  TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEF-DEVDSLKEALT 100
           + +VGN+P+   +  +  IF ++  + S RLV D++T K KG+ + E+ D+  +L     
Sbjct: 17  SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query: 101 YDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGP 133
            +G     R+LRVD A   K  +       G P
Sbjct: 77  LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 43  TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101
           T +V  + ++T +  +   F+    I+ + +V  K + K +G+ ++E++    +  A  +
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163

Query: 102 -DGALLGDRSLRVDIAEGR-------KQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGD 153
            DG  +  R + VD+  GR       ++  GG G  + G  D   R     GR  +   D
Sbjct: 164 ADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH---SGRDDTSRYD 220

Query: 154 RRTGP-PMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPR 196
            R GP P+  R RD    R    + RE + E   +R R + + R
Sbjct: 221 ERPGPSPLPHRDRD----RDRERERRERSRERDKERERRRSRSR 260


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 46  VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 103
           V  L   T + D+  +F     +  V +V D+ T + +GF +V F+ +D  KEA+   +G
Sbjct: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query: 104 ALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRR 155
             L  R +RVD +  ++      G   G P   G      GG GG   G RR
Sbjct: 183 MELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRR 234


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 45  YVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTYD 102
           ++G L   T +  ++A+F K   I  V L++D +T+K +GF ++ F+   D+   A   +
Sbjct: 11  FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFGFRKGGPD---DRGFRDDFLGGRGGSRPGDRRTGPP 159
           G  L  ++++V+ A     + G    R+G P     RG      GGRGGS  G  R  P 
Sbjct: 71  GKSLDGKAIKVEQATKPSFESG----RRGPPPPPRSRGPPRVLRGGRGGS--GGTREPPS 124

Query: 160 MGSRFRD 166
            G    D
Sbjct: 125 RGGHMDD 131


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 45  YVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTYD 102
           ++G L   T +  ++A+F K   I  V L++D +T+K +GF ++ F+   D+   A   +
Sbjct: 11  FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70

Query: 103 GALLGDRSLRVDIAEGRKQDKGGFGFRKGGPD---DRGFRDDFLGGRGGSRPGDRRTGPP 159
           G  L  ++++V+ A     + G    R+G P     RG      GGRGGS  G  R  P 
Sbjct: 71  GKSLDGKAIKVEQATKPSFESG----RRGPPPPPRSRGPPRVLRGGRGGS--GGTREPPS 124

Query: 160 MGSRFRD 166
            G    D
Sbjct: 125 RGGHMDD 131


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 45  YVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 102
           +VG L FNT +  ++  F     I  V +V+D++T + +GF ++ F   +    A+   +
Sbjct: 9   FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMN 68

Query: 103 GALLGDRSLRVDIA--EGRKQDKGGFGFR-KGGPDDRGFRDDFLGGRGGSRPGDRRTG 157
           G  L  R +RVD A    R    GGFG   +G    RG  D    G G  R  D R G
Sbjct: 69  GESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQ---GYGSGRYYDSRPG 123


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 46  VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 103
           V NL + T    +  +F+    +  V + RD+ T + +GF +V F +    ++A+   DG
Sbjct: 18  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query: 104 ALLGDRSLRVDIAE-GRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRRTGPPMGS 162
           A+L  R LRV +A  GR  D      R+G P  R     + GG  G R    R      S
Sbjct: 78  AVLDGRELRVQMARYGRPPD--SHHSRRGPPPRR-----YGGGGYGRRSRSPRRRRRSRS 130

Query: 163 RFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRT 197
           R R     R  +   R  +      R R   K R+
Sbjct: 131 RSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRS 165


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 45  YVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDG 103
           YVGN+ +     +++A F    S+  V ++ DK +   KGF Y+EF + +S++ +L  D 
Sbjct: 175 YVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDE 234

Query: 104 ALLGDRSLRV 113
           +L   R ++V
Sbjct: 235 SLFRGRQIKV 244


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 39  EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKE 97
           EP    +VG L  +T +  I   F     + S+ L  D  T+K +GFC++ F E + +K+
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238

Query: 98  AL--TYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGGSRPGDRR 155
            +   Y    L    ++V +++ + Q +  +G R G             GR   R GD++
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGG-----------FAGRARGRGGDQQ 287

Query: 156 TG 157
           +G
Sbjct: 288 SG 289


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,743,987
Number of Sequences: 37866
Number of extensions: 607895
Number of successful extensions: 3585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 3168
Number of HSP's gapped (non-prelim): 512
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.