Guide to the Human Genome
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Name: LOC646627 Sequence: fasta or formatted (237aa) NCBI GI: 146261165
Description:

phospholipase inhibitor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         20           2
 C cysteine            7.6         18           2
 D aspartate           1.3          3           1
 E glutamate           8.0         19           3
 F phenylalanine       3.4          8           1
 G glycine             4.6         11           2
 H histidine           2.5          6           1
 I isoleucine          3.0          7           1
 K lysine              5.1         12           1
 L leucine             9.7         23           3
 M methionine          0.8          2           1
 N asparagine          6.8         16           1
 P proline             3.8          9           2
 Q glutamine           2.5          6           1
 R arginine            1.7          4           1
 S serine             14.8         35           3
 T threonine           5.9         14           2
 V valine              7.6         18           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase inhibitor 
LOC390940             0.043   PREDICTED: similar to R28379_1 
LOC390940             0.043   PREDICTED: similar to R28379_1 
LOC390940             0.043   PREDICTED: similar to R28379_1 
RAG1                  0.015   recombination activating gene 1 
PLXNC1                0.015   plexin C1 
CD177                 0.015   CD177 molecule 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
RELN                  0.011   reelin isoform b 
RELN                  0.011   reelin isoform a 
ADAM19                0.011   ADAM metallopeptidase domain 19 preproprotein 
MAP3K6                0.011   mitogen-activated protein kinase kinase kinase 6 [Ho...
CD40                  0.009   CD40 antigen isoform 1 precursor 
UMOD                  0.009   uromodulin precursor 
UMOD                  0.009   uromodulin precursor 
WDFY3                 0.009   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
WDFY3                 0.009   WD repeat and FYVE domain containing 3 isoform 2 [Ho...
MBTPS2                0.009   membrane-bound transcription factor peptidase, site 2...
GPR125                0.009   G protein-coupled receptor 125 
ZFP36L2               0.009   zinc finger protein 36, C3H type-like 2 
LDLR                  0.007   low density lipoprotein receptor precursor 
TNXB                  0.007   tenascin XB isoform 1 precursor 
MAML1                 0.007   mastermind-like 1 
ADAM11                0.007   ADAM metallopeptidase domain 11 preproprotein 
UBAP1                 0.007   ubiquitin associated protein 1 
CD40                  0.007   CD40 antigen isoform 2 precursor 
ADAM9                 0.007   ADAM metallopeptidase domain 9 isoform 1 precursor [H...
PRKD2                 0.007   protein kinase D2 isoform B 
PRKD2                 0.007   protein kinase D2 isoform A 
PRKD2                 0.007   protein kinase D2 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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