Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289251 Sequence: fasta or formatted (271aa) NCBI GI: 239744936
Description:

PREDICTED: hypothetical protein XP_002343312

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         30           3
 C cysteine            4.8         13           2
 D aspartate           2.2          6           2
 E glutamate           5.5         15           2
 F phenylalanine       5.2         14           2
 G glycine            11.4         31           2
 H histidine           3.0          8           1
 I isoleucine          1.1          3           1
 K lysine              1.1          3           2
 L leucine             7.4         20           2
 M methionine          2.2          6           1
 N asparagine          0.7          2           1
 P proline             6.6         18           2
 Q glutamine           4.1         11           1
 R arginine            7.4         20           2
 S serine             15.1         41           4
 T threonine           3.3          9           1
 V valine              5.2         14           2
 W tryptophan          1.8          5           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343312 
LOC100290067          1.000   PREDICTED: hypothetical protein XP_002347479 
LOC100293412          0.830   PREDICTED: hypothetical protein 
LOC729815             0.019   PREDICTED: hypothetical protein 
LOC729815             0.019   PREDICTED: hypothetical protein 
CACNA1I               0.019   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.019   calcium channel, voltage-dependent, T type, alpha 1I...
SRRM2                 0.015   splicing coactivator subunit SRm300 
RFWD2                 0.015   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.015   ring finger and WD repeat domain 2 isoform d24 [Homo...
C5orf33               0.015   hypothetical protein LOC133686 isoform 1 
LOC731275             0.013   PREDICTED: hypothetical protein 
CHD9                  0.011   chromodomain helicase DNA binding protein 9 
GSC2                  0.011   goosecoid homeobox 2 
ABCB10                0.009   ATP-binding cassette, sub-family B, member 10 [Homo...
GNAS                  0.009   GNAS complex locus alex 
LOC100129826          0.009   PREDICTED: hypothetical protein LOC100129826 
SFRS18                0.009   splicing factor, arginine/serine-rich 130 
SFRS18                0.009   splicing factor, arginine/serine-rich 130 
LOC100294128          0.009   PREDICTED: hypothetical protein 
LOC100130506          0.009   PREDICTED: hypothetical protein 
LOC100288911          0.009   PREDICTED: hypothetical protein XP_002342241 
CACNA1H               0.009   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.009   calcium channel, voltage-dependent, T type, alpha 1H...
PID1                  0.009   phosphotyrosine interaction domain containing 1 iso...
PID1                  0.009   phosphotyrosine interaction domain containing 1 isof...
LOC100292614          0.007   PREDICTED: hypothetical protein 
LOC100287973          0.007   PREDICTED: hypothetical protein 
LOC100133161          0.007   PREDICTED: hypothetical protein 
LOC100132062          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press