Guide to the Human Genome
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Name: TMPRSS11E Sequence: fasta or formatted (423aa) NCBI GI: 40254871
Description:

transmembrane protease, serine 11E

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         28           2
 C cysteine            2.8         12           2
 D aspartate           5.0         21           1
 E glutamate           5.0         21           2
 F phenylalanine       3.1         13           1
 G glycine             6.4         27           2
 H histidine           3.3         14           1
 I isoleucine          5.2         22           2
 K lysine              6.6         28           2
 L leucine             7.6         32           2
 M methionine          1.9          8           2
 N asparagine          3.5         15           2
 P proline             4.7         20           2
 Q glutamine           3.8         16           2
 R arginine            5.4         23           2
 S serine              7.3         31           2
 T threonine           7.1         30           2
 V valine              8.0         34           2
 W tryptophan          2.4         10           1
 Y tyrosine            4.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 11E 
TMPRSS11E2            0.995   transmembrane protease, serine 11E2 
TMPRSS11A             0.402   transmembrane protease, serine 11A isoform 2 
TMPRSS11A             0.398   transmembrane protease, serine 11A isoform 1 
TMPRSS11F             0.379   transmembrane protease, serine 11F 
TMPRSS11D             0.357   transmembrane protease, serine 11D 
TMPRSS11B             0.338   transmembrane protease, serine 11B 
ST14                  0.233   matriptase 
TMPRSS9               0.226   transmembrane protease, serine 9 
TMPRSS6               0.222   transmembrane protease, serine 6 
TMPRSS13              0.204   transmembrane protease, serine 13 
TMPRSS3               0.197   transmembrane protease, serine 3 isoform 1 
TMPRSS2               0.194   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.194   transmembrane protease, serine 2 isoform 2 
TMPRSS5               0.194   transmembrane protease, serine 5 
TMPRSS7               0.193   transmembrane protease, serine 7 
HPN                   0.193   hepsin 
HPN                   0.193   hepsin 
OVCH1                 0.190   ovochymase 1 
PRSS7                 0.186   enterokinase precursor 
TMPRSS4               0.186   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.186   transmembrane protease, serine 4 isoform 1 
PRSS27                0.184   marapsin 
PRSS21                0.180   testisin isoform 1 
PRSS21                0.177   testisin isoform 2 
PRSS33                0.173   protease, serine, 33 
TESSP1                0.172   testis-specific serine protease 1 
KLKB1                 0.171   plasma kallikrein B1 precursor 
F11                   0.171   coagulation factor XI precursor 
ACR                   0.171   acrosin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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