Guide to the Human Genome
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Name: EBI3 Sequence: fasta or formatted (229aa) NCBI GI: 14577917
Description:

Epstein-Barr virus induced 3 precursor

Referenced in:

Interleukins and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         22           2
 C cysteine            2.6          6           1
 D aspartate           2.6          6           1
 E glutamate           3.1          7           1
 F phenylalanine       3.5          8           1
 G glycine             4.8         11           1
 H histidine           1.7          4           1
 I isoleucine          4.4         10           2
 K lysine              2.2          5           1
 L leucine             9.2         21           3
 M methionine          1.7          4           1
 N asparagine          0.9          2           1
 P proline            11.8         27           2
 Q glutamine           4.8         11           2
 R arginine            7.0         16           1
 S serine              9.6         22           4
 T threonine           7.0         16           1
 V valine              6.6         15           1
 W tryptophan          3.5          8           1
 Y tyrosine            3.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Epstein-Barr virus induced 3 precursor 
CNTFR                 0.169   ciliary neurotrophic factor receptor preproprotein [...
CNTFR                 0.169   ciliary neurotrophic factor receptor preproprotein [H...
IL11RA                0.156   interleukin 11 receptor, alpha isoform 1 precursor ...
IL11RA                0.156   interleukin 11 receptor, alpha isoform 2 precursor [...
IL11RA                0.156   interleukin 11 receptor, alpha isoform 1 precursor [H...
LEPR                  0.073   leptin receptor isoform 3 
LEPR                  0.073   leptin receptor isoform 2 
LEPR                  0.073   leptin receptor isoform 1 
NPHS1                 0.066   nephrin precursor 
CRLF1                 0.059   cytokine receptor-like factor 1 
IL12B                 0.057   interleukin 12B precursor 
IL6R                  0.055   interleukin 6 receptor isoform 1 precursor 
IL6R                  0.055   interleukin 6 receptor isoform 2 precursor 
PRLR                  0.055   prolactin receptor 
SDK1                  0.046   sidekick 1 
MYOM3                 0.044   myomesin family, member 3 
IL6ST                 0.044   interleukin 6 signal transducer isoform 2 precursor ...
IL6ST                 0.044   interleukin 6 signal transducer isoform 1 precursor ...
SDK2                  0.042   sidekick 2 
TTN                   0.037   titin isoform N2-A 
TTN                   0.037   titin isoform novex-2 
TTN                   0.037   titin isoform novex-1 
TTN                   0.037   titin isoform N2-B 
GHR                   0.037   growth hormone receptor precursor 
EPHA2                 0.035   ephrin receptor EphA2 
TNR                   0.033   tenascin R 
EPHB1                 0.033   ephrin receptor EphB1 precursor 
EPHB3                 0.026   ephrin receptor EphB3 precursor 
FN1                   0.026   fibronectin 1 isoform 3 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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