Guide to the Human Genome
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Name: CNTFR Sequence: fasta or formatted (372aa) NCBI GI: 4502931
Description:

ciliary neurotrophic factor receptor preproprotein

Referenced in:

Interleukins and Their Receptors
Neurons

Other entries for this name:
alt mRNA [372aa] ciliary neurotrophic factor receptor preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         41           5
 C cysteine            2.4          9           2
 D aspartate           4.0         15           1
 E glutamate           4.6         17           2
 F phenylalanine       2.7         10           2
 G glycine             5.1         19           3
 H histidine           4.6         17           1
 I isoleucine          4.0         15           2
 K lysine              3.0         11           1
 L leucine             9.4         35           2
 M methionine          0.8          3           1
 N asparagine          3.2         12           1
 P proline             9.1         34           3
 Q glutamine           2.7         10           1
 R arginine            4.0         15           2
 S serine              7.3         27           2
 T threonine           8.9         33           3
 V valine              7.3         27           2
 W tryptophan          3.0         11           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ciliary neurotrophic factor receptor preproprotein [H... 
CNTFR                 1.000   ciliary neurotrophic factor receptor preproprotein [...
IL11RA                0.152   interleukin 11 receptor, alpha isoform 1 precursor ...
IL11RA                0.152   interleukin 11 receptor, alpha isoform 2 precursor [...
IL11RA                0.152   interleukin 11 receptor, alpha isoform 1 precursor [H...
IL6R                  0.109   interleukin 6 receptor isoform 1 precursor 
IL6R                  0.106   interleukin 6 receptor isoform 2 precursor 
EBI3                  0.102   Epstein-Barr virus induced 3 precursor 
CRLF1                 0.066   cytokine receptor-like factor 1 
IL6ST                 0.056   interleukin 6 signal transducer isoform 1 precursor ...
IL12B                 0.056   interleukin 12B precursor 
IL6ST                 0.053   interleukin 6 signal transducer isoform 2 precursor ...
PRLR                  0.050   prolactin receptor 
IL31RA                0.040   gp130-like monocyte receptor 
CSF3R                 0.034   colony stimulating factor 3 receptor isoform d precu...
CSF3R                 0.034   colony stimulating factor 3 receptor isoform c precu...
CSF3R                 0.034   colony stimulating factor 3 receptor isoform b precu...
CSF3R                 0.034   colony stimulating factor 3 receptor isoform a precur...
IL12RB2               0.033   interleukin 12 receptor, beta 2 precursor 
LOC147645             0.020   PREDICTED: hypothetical protein 
LOC147645             0.020   PREDICTED: hypothetical protein 
LOC147645             0.020   PREDICTED: hypothetical protein 
L1CAM                 0.019   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.019   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.019   L1 cell adhesion molecule isoform 1 precursor 
PSG6                  0.019   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG6                  0.019   pregnancy specific beta-1-glycoprotein 6 isoform b [...
LEPR                  0.016   leptin receptor isoform 3 
LEPR                  0.016   leptin receptor isoform 2 
LEPR                  0.016   leptin receptor isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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