Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ADAMTS6 Sequence: fasta or formatted (1117aa) NCBI GI: 64276808
Description:

ADAM metallopeptidase with thrombospondin type 1 motif, 6 preproprotein

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         55           2
 C cysteine            5.8         65           2
 D aspartate           6.0         67           2
 E glutamate           5.8         65           3
 F phenylalanine       3.4         38           2
 G glycine             7.9         88           3
 H histidine           3.5         39           2
 I isoleucine          4.8         54           2
 K lysine              5.2         58           2
 L leucine             6.5         73           2
 M methionine          1.5         17           2
 N asparagine          4.9         55           2
 P proline             5.5         61           3
 Q glutamine           3.9         44           2
 R arginine            5.3         59           4
 S serine              8.1         91           3
 T threonine           5.6         63           2
 V valine              5.3         59           2
 W tryptophan          2.2         25           2
 Y tyrosine            3.7         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADAM metallopeptidase with thrombospondin type 1 mot... 
ADAMTS10              0.597   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS18              0.326   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS7               0.304   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS16              0.303   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS12              0.292   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS9               0.263   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS20              0.249   a disintegrin-like and metalloprotease with thrombo...
ADAMTS19              0.237   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS17              0.230   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS3               0.221   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS2               0.217   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS14              0.207   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS14              0.205   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS1               0.194   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS15              0.192   a disintegrin-like and metalloprotease (reprolysin t...
ADAMTS5               0.179   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS4               0.168   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS8               0.163   ADAM metallopeptidase with thrombospondin type 1 mo...
PAPLN                 0.142   papilin 
ADAMTS13              0.134   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.134   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.124   ADAM metallopeptidase with thrombospondin type 1 mot...
THSD4                 0.116   thrombospondin, type I, domain containing 4 
ADAMTSL1              0.110   ADAMTS-like 1 isoform 4 precursor 
ADAMTSL3              0.109   ADAMTS-like 3 precursor 
ADAMTSL1              0.105   ADAMTS-like 1 isoform 2 precursor 
ADAMTSL4              0.103   thrombospondin repeat containing 1 isoform 1 
ADAMTSL4              0.103   thrombospondin repeat containing 1 isoform 2 
ADAMTS2               0.094   ADAM metallopeptidase with thrombospondin type 1 mot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press