Search of human proteins with 145275210

Search of human proteins with 145275210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|145275210 RNA processing factor 1 [Homo sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|145275210 RNA processing factor 1 [Homo sapiens]                   709   0.0  
gi|15529982 IMP4, U3 small nucleolar ribonucleoprotein, homolog ...   127   1e-29
gi|55770900 BRIX [Homo sapiens]                                        44   2e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    35   0.13 
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    35   0.13 
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    35   0.13 
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    35   0.13 
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    35   0.13 
gi|18093112 ABT1-associated protein [Homo sapiens]                     34   0.22 
gi|4504425 high-mobility group box 1 [Homo sapiens]                    33   0.38 
gi|23308697 signal recognition particle receptor [Homo sapiens]        33   0.38 
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            33   0.50 
gi|5729993 protein tyrosine phosphatase, receptor type, E isofor...    32   0.65 
gi|18860859 protein tyrosine phosphatase, receptor type, E isofo...    32   0.65 
gi|56699473 zinc finger protein 192 [Homo sapiens]                     32   0.85 
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]             32   1.1  
gi|44955929 calmodulin regulated spectrin-associated protein 1-l...    32   1.1  
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ...    31   1.4  
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            31   1.4  
gi|150170670 piccolo isoform 2 [Homo sapiens]                          31   1.4  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          31   1.4  
gi|171906567 peripheral benzodiazepine receptor-associated prote...    31   1.4  
gi|171906559 peripheral benzodiazepine receptor-associated prote...    31   1.4  
gi|52353302 transmembrane protein 198 [Homo sapiens]                   31   1.4  
gi|4885563 protein kinase C, epsilon [Homo sapiens]                    31   1.9  
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo...    31   1.9  
gi|194688135 high-mobility group box 2 [Homo sapiens]                  30   2.5  
gi|194688133 high-mobility group box 2 [Homo sapiens]                  30   2.5  
gi|11321591 high-mobility group box 2 [Homo sapiens]                   30   2.5  
gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo...    30   2.5  

>gi|145275210 RNA processing factor 1 [Homo sapiens]
          Length = 349

 Score =  709 bits (1829), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK 60
           MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK
Sbjct: 1   MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK 60

Query: 61  QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND 120
           QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND
Sbjct: 61  QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND 120

Query: 121 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL 180
           EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL
Sbjct: 121 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL 180

Query: 181 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT 240
           KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT
Sbjct: 181 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT 240

Query: 241 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE 300
           EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE
Sbjct: 241 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE 300

Query: 301 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
           KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL
Sbjct: 301 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349


>gi|15529982 IMP4, U3 small nucleolar ribonucleoprotein, homolog
           [Homo sapiens]
          Length = 291

 Score =  127 bits (320), Expect = 1e-29
 Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 13/289 (4%)

Query: 62  RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
           RR  ++ + +++ ++     K++L++  E        + +P  +  + +  + +++ +D 
Sbjct: 9   RREYLYRKAREEAQRSAQERKERLRRALEE------NRLIPTELRREALALQGSLEFDDA 62

Query: 122 --EVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
             E       DE+   +     PK++ITTS  P  R     ++L  V P +    R    
Sbjct: 63  GGEGVTSHVDDEYR--WAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
           +  ++  C A   TDL+V++E R TP GLI+SHLP GPTA+F + +V +R +I   G   
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLG-TM 179

Query: 240 TEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRS 299
           +E  P +I + F++RLG  +  +   LFP  P+    +V TF NQ DYI FR H Y    
Sbjct: 180 SEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVYKKTD 238

Query: 300 EKKVGIQELGPRFTLKLRSLQKGTFDSK-YGEYEWVHKPREMDTSRRKF 347
            + V + E+GPRF LKL  ++ GT + +   + EW   P      +R F
Sbjct: 239 HRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVF 287


>gi|55770900 BRIX [Homo sapiens]
          Length = 353

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 34/202 (16%)

Query: 143 KILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR--RGLALKKIIPQCIARDFTDLIVINE 200
           +ILI +S   + RT  L + L  ++P+S    +  R   L  I   C  ++    I    
Sbjct: 61  RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEA 120

Query: 201 DRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGK-----------DPT-EHIP---- 244
            +K    + LS+ P+GP+A F + ++    E+K  G            DP  + +P    
Sbjct: 121 KKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYAL 180

Query: 245 --EIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKK 302
             E+++  F+T   H          P +  F+   V TF    + I+FR  + I   E+ 
Sbjct: 181 LKELLIQIFSTPRYH----------PKSQPFVD-HVFTFTILDNRIWFRNFQII---EED 226

Query: 303 VGIQELGPRFTLKLRSLQKGTF 324
             + E+GPRF L L  + +G+F
Sbjct: 227 AALVEIGPRFVLNLIKIFQGSF 248


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 4    AGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRR 63
            +GD     GK SL  + A +E +E    G G  E G Q             S  K+K+ +
Sbjct: 1320 SGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQ-------------SNPKSKKEK 1366

Query: 64   HLMFTRWKQQQRKE-KLAAKKKLKKEREALGDKAPPK 99
                 R K +++KE K  AKK   K+ E+   K   K
Sbjct: 1367 KKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKK 1403


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 4    AGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRR 63
            +GD     GK SL  + A +E +E    G G  E G Q             S  K+K+ +
Sbjct: 1359 SGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQ-------------SNPKSKKEK 1405

Query: 64   HLMFTRWKQQQRKE-KLAAKKKLKKEREALGDKAPPK 99
                 R K +++KE K  AKK   K+ E+   K   K
Sbjct: 1406 KKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKK 1442


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 4    AGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRR 63
            +GD     GK SL  + A +E +E    G G  E G Q             S  K+K+ +
Sbjct: 1396 SGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQ-------------SNPKSKKEK 1442

Query: 64   HLMFTRWKQQQRKE-KLAAKKKLKKEREALGDKAPPK 99
                 R K +++KE K  AKK   K+ E+   K   K
Sbjct: 1443 KKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKK 1479


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 4    AGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRR 63
            +GD     GK SL  + A +E +E    G G  E G Q             S  K+K+ +
Sbjct: 1319 SGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQ-------------SNPKSKKEK 1365

Query: 64   HLMFTRWKQQQRKE-KLAAKKKLKKEREALGDKAPPK 99
                 R K +++KE K  AKK   K+ E+   K   K
Sbjct: 1366 KKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKK 1402


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
            sapiens]
          Length = 1450

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 4    AGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRR 63
            +GD     GK SL  + A +E +E    G G  E G Q             S  K+K+ +
Sbjct: 1358 SGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQ-------------SNPKSKKEK 1404

Query: 64   HLMFTRWKQQQRKE-KLAAKKKLKKEREALGDKAPPK 99
                 R K +++KE K  AKK   K+ E+   K   K
Sbjct: 1405 KKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKK 1441


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 57  IKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTID 106
           +KNK       T W+Q   K+K   KK+LK++++AL ++A  + +P  +D
Sbjct: 619 VKNKLEGKDKLTPWEQFLEKKK--EKKRLKRKQKALAEEASEEELPSDVD 666


>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKP-- 100
           PK     PG SI ++  K       T    +Q  EK AAK K K E++    +A  KP  
Sbjct: 111 PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170

Query: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
             K +       +   +  DEE   DE  +E
Sbjct: 171 AKKGVVKAEKSKKKKEEEEDEEDEEDEEEEE 201


>gi|23308697 signal recognition particle receptor [Homo sapiens]
          Length = 638

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 52  FSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
           F  SE   K  R ++ TR ++ + K K + KK  KKE    G  A  KPVP       V 
Sbjct: 139 FEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSD-GPLATSKPVPAEKSGLPVG 197

Query: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRP 152
            E  V+ + EE+      +EF     +        T SD P
Sbjct: 198 PENGVELSKEEL-IRRKREEFIQKHGRGMEKSNKSTKSDAP 237


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKP-- 100
           PK     PG SI ++  K       T    +Q  EK AAK K K E++    +A  KP  
Sbjct: 111 PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEA 170

Query: 101 ----VPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
               V K   +++  +E   + ++E+   ++  DE
Sbjct: 171 AKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDE 205


>gi|5729993 protein tyrosine phosphatase, receptor type, E isoform 1
           precursor [Homo sapiens]
          Length = 700

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 196 IVINEDRKTPNGLI----------LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPE 245
           +V   D+K PNG++          LS  P+GP  +F +    L +EI+ R  D  +   E
Sbjct: 78  VVSTSDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFRE 137


>gi|18860859 protein tyrosine phosphatase, receptor type, E isoform
           2 [Homo sapiens]
          Length = 642

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 196 IVINEDRKTPNGLI----------LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPE 245
           +V   D+K PNG++          LS  P+GP  +F +    L +EI+ R  D  +   E
Sbjct: 20  VVSTSDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFRE 79


>gi|56699473 zinc finger protein 192 [Homo sapiens]
          Length = 578

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 110 VYDETTVDPNDEEVAYDEATDEFASYF---------NKQTSPKILITTSDRPHGRTVRLC 160
           + +E  +DP+ +++  D   + F + F         N++ + K +I+T  +PHG T   C
Sbjct: 230 IREEWLLDPSQKDLCRDNRPENFRNMFSLGGETRSENRELASKQVISTGIQPHGETAAKC 289


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAA--KKKLKKEREALGDKAPPKP 100
           PK     PG SI ++  K       T    +Q  EK AA  K+K KK+  A   K  P  
Sbjct: 785 PKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNS 844

Query: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
             K +       +   +  DEE   +E  +E
Sbjct: 845 AKKRVVKAEKSKKKKEEEEDEEDEQEEENEE 875


>gi|44955929 calmodulin regulated spectrin-associated protein 1-like
           1 [Homo sapiens]
          Length = 1478

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 3   KAGDKSSSSGKKSLKRKAAAEE----LQEAAGAGDGATENGVQP---------------- 42
           K+   SS+S    +K  + AE+    L    G   G++     P                
Sbjct: 671 KSQPGSSASSSSGVKMTSFAEQKFRKLNHTDGKSSGSSSQKTTPEGSELNIPHVVAWAQI 730

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKK-----LKKEREALGDKAP 97
           P+    P G   +++   +  HL   R K ++++  + A+KK       K+R+ +G  A 
Sbjct: 731 PEETGLPQGRDTTQLLASEMVHL---RMKLEEKRRAIEAQKKKMEAAFTKQRQKMGRTAF 787

Query: 98  PKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKI 144
              V K  D      E      DE+V  D A ++ +   + Q S  +
Sbjct: 788 LTVVKKKGDGISPLREEAAGAEDEKVYTDRAKEKESQKTDGQRSKSL 834


>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
           sapiens]
          Length = 321

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 23/140 (16%)

Query: 2   AKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAA----AFPPGFSISEI 57
           A AG KS   G +S   K      Q+AA AG  +   G + P+ A    A   G+     
Sbjct: 159 ATAGAKSRGGGVRSRGGKKIRRRGQKAAAAGAKSCGGGGKKPQKARAVGARRRGWKKLRR 218

Query: 58  KNKQ-------------RRHLMFTRWKQQQRKEKLAA------KKKLKKEREALGDKAPP 98
           + K+             R+     R K ++R +K AA      KK  +++  A+  K+P 
Sbjct: 219 RGKKAAAAGGEKAGKKLRQQGEKGRKKPRRRGQKAAAAGGERCKKPRRQKAAAVSAKSPK 278

Query: 99  KPVPKTIDNQRVYDETTVDP 118
           KP  + +++ R+  E+  +P
Sbjct: 279 KPRRRVLNSARLGAESRKNP 298


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 56  EIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQ 108
           E + K+R      R K+++RKE+   KK+ KKER    ++   +   +  D+Q
Sbjct: 166 EEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKDRKTDRQTDSQ 218


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 15  SLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGF--SISEIKNKQRRHLMFTRWKQ 72
           SL+ +   E L  AA AG GA  +G   P   A P G    +S++  ++RR +     + 
Sbjct: 6   SLEGEGLPEGLAAAAAAGGGA--SGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRA 63

Query: 73  QQRKE----KLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEA 128
           Q   +      AA+      ++ L    PPK   +  D  R        P    ++    
Sbjct: 64  QGLPKGSVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGR--------PAQPGLSKSRT 115

Query: 129 TDEFAS 134
           TD F S
Sbjct: 116 TDTFRS 121


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 15  SLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGF--SISEIKNKQRRHLMFTRWKQ 72
           SL+ +   E L  AA AG GA  +G   P   A P G    +S++  ++RR +     + 
Sbjct: 6   SLEGEGLPEGLAAAAAAGGGA--SGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRA 63

Query: 73  QQRKE----KLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEA 128
           Q   +      AA+      ++ L    PPK   +  D  R        P    ++    
Sbjct: 64  QGLPKGSVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGR--------PAQPGLSKSRT 115

Query: 129 TDEFAS 134
           TD F S
Sbjct: 116 TDTFRS 121


>gi|171906567 peripheral benzodiazepine receptor-associated protein
           1 isoform b [Homo sapiens]
          Length = 1797

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 1   MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGD----GATENGVQPPKAAAFPPGFSISE 56
           ++  G  SSS G+ S+ R     E ++A   GD      +  G+  P A  +P    +  
Sbjct: 685 LSVGGGGSSSGGQSSVGRSQPRPEEEDA---GDELSLSPSPEGLGEPPAVPYPRRLVVL- 740

Query: 57  IKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKE--REALGDKAPPKPVPKTID 106
              KQ  H +   W+    + +L           R+ALG  APPK V + +D
Sbjct: 741 ---KQLAHSVVLAWEPPPEQVELHGFHICVNGELRQALGPGAPPKAVLENLD 789


>gi|171906559 peripheral benzodiazepine receptor-associated protein
           1 isoform a [Homo sapiens]
          Length = 1857

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 1   MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGD----GATENGVQPPKAAAFPPGFSISE 56
           ++  G  SSS G+ S+ R     E ++A   GD      +  G+  P A  +P    +  
Sbjct: 745 LSVGGGGSSSGGQSSVGRSQPRPEEEDA---GDELSLSPSPEGLGEPPAVPYPRRLVVL- 800

Query: 57  IKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKE--REALGDKAPPKPVPKTID 106
              KQ  H +   W+    + +L           R+ALG  APPK V + +D
Sbjct: 801 ---KQLAHSVVLAWEPPPEQVELHGFHICVNGELRQALGPGAPPKAVLENLD 849


>gi|52353302 transmembrane protein 198 [Homo sapiens]
          Length = 360

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 59  NKQRRHLMFTRWKQQQ-RKEKLAAKKKLKKEREALGDKAPPKPVP 102
           ++QRR +   R +QQ+ RKEK   +KK        G +APP+P P
Sbjct: 251 SRQRRRVQLMRIRQQEDRKEK--RRKKRPPRAPLRGPRAPPRPGP 293


>gi|4885563 protein kinase C, epsilon [Homo sapiens]
          Length = 737

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 6   DKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHL 65
           DK ++SG++  K  A AE  Q A+G+     +     P +   P    I E++N  R+ L
Sbjct: 311 DKITNSGQRRKKLIAGAESPQPASGSSPSEEDRSKSAPTS---PCDQEIKELENNIRKAL 367

Query: 66  MFTRWKQQQR 75
            F    ++ R
Sbjct: 368 SFDNRGEEHR 377


>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
           sapiens]
          Length = 1905

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 10  SSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTR 69
           +  KK +++K    E Q         T  G    K           E K K +      +
Sbjct: 711 AKSKKKMRQKVQRGECQ--------TTIQGQARNKRKQETKSLKQKEAKKKSKAEKEKGK 762

Query: 70  WKQQQRKEKLAAKKKLK---KEREALGDKAPPKPVPKTIDNQRVYDE 113
            KQ++ KEK+  +KK K   KE+E +    P     KT+  QR  +E
Sbjct: 763 TKQEKLKEKVKREKKEKVKMKEKEEVTKAKPACKADKTLATQRRLEE 809


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREAL---------- 92
           PK  +  PG SI +   K          K +Q  E+ AAK K K E++            
Sbjct: 111 PKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170

Query: 93  GDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
           G K P +P      N+   +E   +  DE+   ++  +E
Sbjct: 171 GKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREAL---------- 92
           PK  +  PG SI +   K          K +Q  E+ AAK K K E++            
Sbjct: 111 PKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170

Query: 93  GDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
           G K P +P      N+   +E   +  DE+   ++  +E
Sbjct: 171 GKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 43  PKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREAL---------- 92
           PK  +  PG SI +   K          K +Q  E+ AAK K K E++            
Sbjct: 111 PKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170

Query: 93  GDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDE 131
           G K P +P      N+   +E   +  DE+   ++  +E
Sbjct: 171 GKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209


>gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo
           sapiens]
          Length = 974

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 176 RGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHF---KMSSVRLRKEI 232
           R +A+K+++ +C      ++ ++ E  + PN L       GP  H+   ++    L++ +
Sbjct: 591 RAVAVKRLLRECFGLVRREVQLLQESDRHPNVLRYFCTERGPQFHYIALELCRASLQEYV 650

Query: 233 KRRGKDPTEHIPEIILNNFTTRLGH 257
           +    D     PE++L    + L H
Sbjct: 651 ENPDLDRGGLEPEVVLQQLMSGLAH 675


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,290,103
Number of Sequences: 37866
Number of extensions: 673838
Number of successful extensions: 3357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 3258
Number of HSP's gapped (non-prelim): 144
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.