Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 109638749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109638749 signal recognition particle 72kDa [Homo sapiens]
(671 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109638749 signal recognition particle 72kDa [Homo sapiens] 1327 0.0
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 43 8e-04
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 43 8e-04
gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens] 42 0.002
gi|83415184 transmembrane and tetratricopeptide repeat containin... 42 0.002
gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens] 41 0.003
gi|4885379 histone cluster 1, H1e [Homo sapiens] 41 0.004
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 41 0.004
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 41 0.004
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 40 0.005
gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens] 40 0.007
gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens] 40 0.007
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 40 0.007
gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 39 0.012
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 39 0.012
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 39 0.012
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 39 0.012
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 39 0.020
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ... 38 0.027
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ... 38 0.027
gi|4885377 histone cluster 1, H1d [Homo sapiens] 38 0.035
gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo sap... 37 0.059
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 37 0.059
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 37 0.077
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 37 0.077
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 37 0.077
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 37 0.077
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.077
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.077
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 37 0.077
>gi|109638749 signal recognition particle 72kDa [Homo sapiens]
Length = 671
Score = 1327 bits (3434), Expect = 0.0
Identities = 671/671 (100%), Positives = 671/671 (100%)
Query: 1 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS 60
MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS
Sbjct: 1 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS 60
Query: 61 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY 120
FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY
Sbjct: 61 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY 120
Query: 121 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY 180
RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY
Sbjct: 121 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY 180
Query: 181 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG 240
NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG
Sbjct: 181 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG 240
Query: 241 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 300
RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK
Sbjct: 241 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 300
Query: 301 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL 360
KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL
Sbjct: 301 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL 360
Query: 361 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE 420
LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE
Sbjct: 361 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE 420
Query: 421 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 480
DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD
Sbjct: 421 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 480
Query: 481 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD 540
IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD
Sbjct: 481 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD 540
Query: 541 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK 600
SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK
Sbjct: 541 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK 600
Query: 601 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ 660
GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ
Sbjct: 601 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ 660
Query: 661 QKKKKGGKGGW 671
QKKKKGGKGGW
Sbjct: 661 QKKKKGGKGGW 671
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 43.1 bits (100), Expect = 8e-04
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 22/217 (10%)
Query: 464 KEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALEN 523
+EA + ++ ++ +++ T +L++ + PEKAK+ P + V +E
Sbjct: 578 EEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVE- 636
Query: 524 SAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDP--KVTPDPERWLPMR 581
+KG S +E+G+ + K ++KGK P + P + P P+
Sbjct: 637 --------EKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVE 688
Query: 582 ERSYYRGRKKGKKKDQIGKGTQGATAGASSE--------LDASKTVSSPPTSPRPGSAAT 633
E KG++K++ K + A E + K SP T
Sbjct: 689 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVT 748
Query: 634 VSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGKGG 670
++ S + + K G P ++K +K+K GG+GG
Sbjct: 749 ITKSV-KVHLEKETKEEGKPLQQEK--EKEKAGGEGG 782
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 43.1 bits (100), Expect = 8e-04
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 22/217 (10%)
Query: 464 KEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALEN 523
+EA + ++ ++ +++ T +L++ + PEKAK+ P + V +E
Sbjct: 202 EEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVE- 260
Query: 524 SAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDP--KVTPDPERWLPMR 581
+KG S +E+G+ + K ++KGK P + P + P P+
Sbjct: 261 --------EKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVE 312
Query: 582 ERSYYRGRKKGKKKDQIGKGTQGATAGASSE--------LDASKTVSSPPTSPRPGSAAT 633
E KG++K++ K + A E + K SP T
Sbjct: 313 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVT 372
Query: 634 VSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGKGG 670
++ S + + K G P ++K +K+K GG+GG
Sbjct: 373 ITKSV-KVHLEKETKEEGKPLQQEK--EKEKAGGEGG 406
>gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]
Length = 1316
Score = 41.6 bits (96), Expect = 0.002
Identities = 86/371 (23%), Positives = 148/371 (39%), Gaps = 73/371 (19%)
Query: 3 SGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFK 62
S GS V W ++ R G+ +ALK + LQ + +D AL K CL ++
Sbjct: 138 SDGSKQGHVLKAWLDITR-GKEPYTKKALKYFEEGLQ-DGNDTFALLGKAQCLEMRQNYS 195
Query: 63 EALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALK----TIESAN----QQTDKLKEL 114
AL +N + N SF A+ + +++ AL+ T+E+A Q + ++ L
Sbjct: 196 GALETVNQ----IIVNFPSFLPAFVKKM--KLQLALQDWDQTVETAQRLLLQDSQNVEAL 249
Query: 115 YGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEG 174
Q LY + R + E+ T L + + + + P+N
Sbjct: 250 RMQALYYVCREGDI----------------EKASTKLENL---GNTLDAMEPQNA----- 285
Query: 175 THELCYNTACAL---IGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQ 231
+L YN A G+ QL ILQK + L R+ S + Q+E A +
Sbjct: 286 --QLFYNITLAFSRTCGRSQL-----ILQKIQTLLERAFSLNPQ------QSEFAT---E 329
Query: 232 MAYILQLQGRTEEALQLYNQIIKLKPTDV-------------GLLAVIANNIITINKDQN 278
+ Y + LQGR +EAL+ Y + L T V G L + +N+ Q
Sbjct: 330 LGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQ 389
Query: 279 VFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHL 338
++ +A + K +K+Q + I +L + +Q E + +P+ L
Sbjct: 390 SIGKSAELIYLHAV-LAMKKNKRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPDFL 448
Query: 339 LPVLIQAAQLC 349
L ++++ C
Sbjct: 449 LEIVMEYLSFC 459
Score = 34.7 bits (78), Expect = 0.29
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 324 RKISASLQSQSPE------HLLPVLIQAAQLCR--EKQHTKAIELLQEFSDQHPENAAEI 375
++I AS +S+ + H L + ++ + R +QH +A ++LQ+ + + E+
Sbjct: 596 KRIGASTKSKDRKTEVDTSHRLSIFLELIDVHRLNGEQH-EATKVLQDAIHEFSGTSEEV 654
Query: 376 KLTMAQ--LKISQGNISKACLILRSIEELKHKPGMVSALVTM----YSHEEDIDSAIEVF 429
++T+A L ++QG+I +A IL+++ +P + A M H +D I F
Sbjct: 655 RVTIANADLALAQGDIERALSILQNVTA--EQPYFIEAREKMADIYLKHRKDKMLYITCF 712
Query: 430 TQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 480
+ + N P L+ +A L+ +EAI +Q QNPKD
Sbjct: 713 REIAERMAN-----PRSFLLLGDAYMNILE---PEEAIVAYEQALNQNPKD 755
Score = 32.0 bits (71), Expect = 1.9
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Query: 178 LCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDP-QAELAIIHGQMAYIL 236
LCY+ A L+ ++A K+LQ A L ++E + E+ Q LA ++ +M +
Sbjct: 791 LCYDLAELLLKLKWYDKAEKVLQHA--LAHEPVNELSALMEDGRCQVLLAKVYSKMEKLG 848
Query: 237 QLQGRTEEALQLYNQIIK--------LKPTDVGLLAVIANNIITINKDQNVFDSKKKVKL 288
++A +L +++K P L A I I + Q D +K +K
Sbjct: 849 DAITALQQARELQARVLKRVQMEQPDAVPAQKHLAAEICAEIAKHSVAQR--DYEKAIKF 906
Query: 289 TNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQL 348
V + K I A L + + + C + A L ++ ++ A +
Sbjct: 907 YREALVHCETDNK----IMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 962
Query: 349 CREKQHTKAIELLQEFSDQHPEN 371
R++ + +A+ LQ+ ++ P+N
Sbjct: 963 FRKQDYEQAVFHLQQLLERKPDN 985
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 41.6 bits (96), Expect = 0.002
Identities = 70/333 (21%), Positives = 131/333 (39%), Gaps = 52/333 (15%)
Query: 64 ALNVINTHTKVLANNSLSFEKAYCEY-----RLNRIENALKTIESANQQTDKLKEL--YG 116
ALN + T T+ A + +++A + L + N LK+ E + LK+ YG
Sbjct: 411 ALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYG 470
Query: 117 -----------QVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVV 165
+L ER+ E +Y+ ++N D D N + EK V
Sbjct: 471 PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHN--NYGVFLVDTGLPEKAV 528
Query: 166 PENLGLQEGTHELCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAEL 225
+ +L + A++ G+L +++ AE+ +R+L A
Sbjct: 529 AH----YQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV----------AHK 574
Query: 226 AIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKK 285
A I + + GR EEALQ+Y + L+P+ L +A + + + +K+
Sbjct: 575 AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQ------TKEA 628
Query: 286 VKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISA-----SLQSQSPEHLLP 340
K+TN + ++ +E + L A+Y+ Q + + A L+ + P+ +
Sbjct: 629 EKMTN------HIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISE 682
Query: 341 VLIQAAQLCREKQ-HTKAIELLQEFSDQHPENA 372
+ RE+ KA E + +P+ A
Sbjct: 683 LFFTKGNQLREQNLLDKAFESYRVAVQLNPDQA 715
Score = 31.6 bits (70), Expect = 2.5
Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 46/240 (19%)
Query: 226 AIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKK 285
A +H A L+ QGR +EA+ Y +KL P L NN+ T+ +D ++ K
Sbjct: 375 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASAL----NNLGTLTRD----TAEAK 426
Query: 286 VKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQA 345
+ A +L + +A+ FN L + E+ + PE A
Sbjct: 427 MYYQRA----LQLHPQHNRAL-FNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLA 481
Query: 346 AQLCREKQHTKAIELLQ-------EFSDQH------------PENAA-----EIKLT--- 378
+ L +++ +A E+ Q + SD H PE A IKL+
Sbjct: 482 SLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH 541
Query: 379 ------MAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQA 432
+ +L S G S A + ++ HK ++S L +Y + + A++++ +A
Sbjct: 542 HVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEA 601
Score = 30.8 bits (68), Expect = 4.2
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 31/233 (13%)
Query: 224 ELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANN-----IITINKDQN 278
E A + +A +L Q R +EA ++Y IK P L NN + T ++
Sbjct: 472 EFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDL----HNNYGVFLVDTGLPEKA 527
Query: 279 VFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHL 338
V ++ +KL+ + V + +++ N Y + K E L
Sbjct: 528 VAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKA---------EIL 578
Query: 339 LPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRS 398
P+ A ++ +A+++ QE + P E++L +AQ+ G +A +
Sbjct: 579 SPL---GALYYNTGRYEEALQIYQEAAALQPSQR-ELRLALAQVLAVMGQTKEAEKMTNH 634
Query: 399 IEELKHKPGMVSA---LVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLS 448
I + + G + L +YS +E+ D A++ +A+Q +PK P +S
Sbjct: 635 I--VSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQL----KPKDPKVIS 681
>gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens]
Length = 618
Score = 41.2 bits (95), Expect = 0.003
Identities = 91/489 (18%), Positives = 184/489 (37%), Gaps = 79/489 (16%)
Query: 92 NRIENALKTIESANQQTDKLKE--LYGQVLYRLERYDECLAVYRD------------LVR 137
+ + N + ++ + Q +L+E + + + +L++YD+ ++ D L
Sbjct: 122 DELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKDTDSTKEPLDDLFP 181
Query: 138 NSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMK 197
N +DD + + S+ AA +P L +N QG+ A+
Sbjct: 182 NDEDDPGQGIQQQHSSAAAAAQQGGYEIPARL-------RTLHNLVIQYASQGRYEVAVP 234
Query: 198 ILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKP 257
LC+++L ED + T ++A + +A + + Q + ++A L N + ++
Sbjct: 235 -------LCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 286
Query: 258 TDVG----LLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALL 313
+G +A NN+ + K+ K AE L K+ L+ E K L
Sbjct: 287 KTLGKDHPAVAATLNNLAVLYG--------KRGKYKEAE----PLCKRALEIRE--KVLG 332
Query: 314 AMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAA 373
+ + A+Q ++ Q+Q + E + +A+E+ Q N A
Sbjct: 333 KDHPDVAKQLNNLALLCQNQGKYEEV-----------EYYYQRALEIYQTKLGPDDPNVA 381
Query: 374 EIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSA-----LVTMYSHEEDIDSAIE- 427
+ K +A + QG +A + + I H+ S + M++ E + +
Sbjct: 382 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 441
Query: 428 ---VFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTL 484
F + WY+ + SP + ++ + G+ + A + + + + + +
Sbjct: 442 DGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQGLDNV 501
Query: 485 AQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPK 544
+ A L DPE + SL VDV E+ G +V+ +
Sbjct: 502 HKQRVAEVLNDPENME------KRRSRESLNVDVVKYESGPDG------GEEVSMSVEWN 549
Query: 545 EQGQGDLKK 553
G G LK+
Sbjct: 550 GDGTGSLKR 558
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 40.8 bits (94), Expect = 0.004
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 26/180 (14%)
Query: 489 SAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALEN-----------SAGATYIRKKGGKV 537
S SL +KA A + + ++ +K+ +++L + ++G+ + KK
Sbjct: 55 SGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAA-- 112
Query: 538 TGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQ 597
+G+++PK + G K KK K PK TP + KK KK +
Sbjct: 113 SGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPK-------------KSAKKTPKKAK 159
Query: 598 IGKGTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKK 657
GA S + + P SP A A+ P+ KP A A KK
Sbjct: 160 KPAAAAGAKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 219
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 40.8 bits (94), Expect = 0.004
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 508 SSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYD 567
SSD+ LK AL+ S + K+ K + D + + + + + K D
Sbjct: 149 SSDNSGLKRKTPALKMS-----VSKRARKASSDLDQASVSPSEEENSESSSESE--KTSD 201
Query: 568 PKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPR 627
TP+ + + R GRKK K ++ + GA E A +S +S
Sbjct: 202 QDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSSSSS 261
Query: 628 PGSAATVSASTSNIIPPRHQKPAGAPATKKKQQQKK 663
S + VS PPR +KPA P K + ++ K
Sbjct: 262 SSSDSDVSVKK----PPRGRKPAEKPLPKPRGRKPK 293
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 40.8 bits (94), Expect = 0.004
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 508 SSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYD 567
SSD+ LK AL+ S + K+ K + D + + + + + K D
Sbjct: 149 SSDNSGLKRKTPALKMS-----VSKRARKASSDLDQASVSPSEEENSESSSESE--KTSD 201
Query: 568 PKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPR 627
TP+ + + R GRKK K ++ + GA E A +S +S
Sbjct: 202 QDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSSSSS 261
Query: 628 PGSAATVSASTSNIIPPRHQKPAGAPATKKKQQQKK 663
S + VS PPR +KPA P K + ++ K
Sbjct: 262 SSSDSDVSVKK----PPRGRKPAEKPLPKPRGRKPK 293
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 40.4 bits (93), Expect = 0.005
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 34/222 (15%)
Query: 461 GRKKEAISDLQQLWKQNPKD------------IHTLAQLISAYSLVDPEKAKALSKHLPS 508
G K+A +D + L K + D + ++L S S D +K K SK +
Sbjct: 375 GDAKDARNDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSK---T 431
Query: 509 SDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDP 568
+ S+K D E+ + + KKG K +++G+ D KK KKK K KN +
Sbjct: 432 DNKKSVKNDEESTDADSEPKGDSKKGKK------DEKKGKKDSKKDDKKKDAK--KNAE- 482
Query: 569 KVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRP 628
+ + E L +++ + KKG KKD I K + T +E D S ++
Sbjct: 483 --STEMESDLELKKDKKHSKEKKGSKKD-IKKDARKDTESTDAEFDESSKTGFKTSTKIK 539
Query: 629 GSAATVSASTSNIIPPRHQKPA----GAPATKKKQQQKKKKG 666
GS + S ++ P +K G A K + + K+G
Sbjct: 540 GSD---TESEESLYKPGAKKKIDESDGTSANSKMEGLESKRG 578
Score = 34.7 bits (78), Expect = 0.29
Identities = 45/188 (23%), Positives = 63/188 (33%), Gaps = 11/188 (5%)
Query: 491 YSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGD 550
Y+ D +K S S DS K D + ++ + +KK K +S E G
Sbjct: 283 YTKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDD-KKKDVKKDTESTDAESGDSK 341
Query: 551 LKKKKKKKKGKLPKNYDPK-------VTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQ 603
++K KK K K D K + D E R+ R KK K D K +
Sbjct: 342 DERKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDDKKKDAK 401
Query: 604 GATAGASSELDASKTVSSPPTSPRPGSAAT---VSASTSNIIPPRHQKPAGAPATKKKQQ 660
T SE + S + T S +P G KK +
Sbjct: 402 KITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDADSEPKGDSKKGKKDE 461
Query: 661 QKKKKGGK 668
+K KK K
Sbjct: 462 KKGKKDSK 469
>gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]
Length = 573
Score = 40.0 bits (92), Expect = 0.007
Identities = 64/332 (19%), Positives = 130/332 (39%), Gaps = 58/332 (17%)
Query: 92 NRIENALKTIESANQQTDKLKE--LYGQVLYRLERYDECLAVYRD------------LVR 137
+ + N + ++ + Q +L+E + + + +L++YD+ ++ D L
Sbjct: 122 DELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKDTDSTKEPLDDLFP 181
Query: 138 NSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMK 197
N +DD + + S+ AA +P L +N QG+ A+
Sbjct: 182 NDEDDPGQGIQQQHSSAAAAAQQGGYEIPARL-------RTLHNLVIQYASQGRYEVAVP 234
Query: 198 ILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKP 257
LC+++L ED + T ++A + +A + + Q + ++A L N + ++
Sbjct: 235 -------LCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 286
Query: 258 TDVG----LLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALL 313
+G +A NN+ + K+ K AE L K+ L+ E K L
Sbjct: 287 KTLGKDHPAVAATLNNLAVLYG--------KRGKYKEAE----PLCKRALEIRE--KVLG 332
Query: 314 AMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAA 373
+ + A+Q ++ Q+Q + E + +A+E+ Q N A
Sbjct: 333 KDHPDVAKQLNNLALLCQNQGKYEEV-----------EYYYQRALEIYQTKLGPDDPNVA 381
Query: 374 EIKLTMAQLKISQGNISKACLILRSIEELKHK 405
+ K +A + QG +A + + I H+
Sbjct: 382 KTKNNLASCYLKQGKFKQAETLYKEILTRAHE 413
>gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens]
Length = 560
Score = 40.0 bits (92), Expect = 0.007
Identities = 64/332 (19%), Positives = 130/332 (39%), Gaps = 58/332 (17%)
Query: 92 NRIENALKTIESANQQTDKLKE--LYGQVLYRLERYDECLAVYRD------------LVR 137
+ + N + ++ + Q +L+E + + + +L++YD+ ++ D L
Sbjct: 122 DELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKDTDSTKEPLDDLFP 181
Query: 138 NSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMK 197
N +DD + + S+ AA +P L +N QG+ A+
Sbjct: 182 NDEDDPGQGIQQQHSSAAAAAQQGGYEIPARL-------RTLHNLVIQYASQGRYEVAVP 234
Query: 198 ILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKP 257
LC+++L ED + T ++A + +A + + Q + ++A L N + ++
Sbjct: 235 -------LCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 286
Query: 258 TDVG----LLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALL 313
+G +A NN+ + K+ K AE L K+ L+ E K L
Sbjct: 287 KTLGKDHPAVAATLNNLAVLYG--------KRGKYKEAE----PLCKRALEIRE--KVLG 332
Query: 314 AMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAA 373
+ + A+Q ++ Q+Q + E + +A+E+ Q N A
Sbjct: 333 KDHPDVAKQLNNLALLCQNQGKYEEV-----------EYYYQRALEIYQTKLGPDDPNVA 381
Query: 374 EIKLTMAQLKISQGNISKACLILRSIEELKHK 405
+ K +A + QG +A + + I H+
Sbjct: 382 KTKNNLASCYLKQGKFKQAETLYKEILTRAHE 413
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 40.0 bits (92), Expect = 0.007
Identities = 90/432 (20%), Positives = 168/432 (38%), Gaps = 55/432 (12%)
Query: 95 ENALKTIESANQQT-DKLKELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSA 153
+N LK ++++T DKLKE ++ E D+ +D+++ Q+ +E + L A
Sbjct: 396 QNKLKAEMDSHKETKDKLKETTTKLTQAKEEADQIRKNCQDMIKTYQES-EEIKSNELDA 454
Query: 154 VV-AAQSNWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMKILQKAEDLCR----- 207
+ + EK + E E H +L + ++ D R
Sbjct: 455 KLRVTKGELEKQMQEKSDQLEMHHAKI----------KELEDLKRTFKEGMDELRTLRTK 504
Query: 208 -RSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVI 266
+ L ++ TE++ II+ Q A I L + + A QL Q+ + K L +
Sbjct: 505 VKCLEDERLRTEDELSKYKEIINRQKAEIQNLLDKVKTADQLQEQLQRGKQEIENLKEEV 564
Query: 267 ANNIITINKDQNVFDSKKK--------VKLTNAEGVEFKLSKKQLQAIEFNKALL--AMY 316
+ IN Q + +K + ++ + + LQ+ +F+K +
Sbjct: 565 ESLNSLINDLQKDIEGSRKRESELLLFTERLTSKNAQLQSESNSLQS-QFDKVSCSESQL 623
Query: 317 TNQAEQCRKISASLQSQ--SPEHLLPVLIQAAQ---LCREKQ----HTKAIELLQEFSDQ 367
+Q EQ ++ + +L+S+ E L +Q Q CR+ + T+ EL E Q
Sbjct: 624 QSQCEQMKQTNINLESRLLKEEELRKEEVQTLQAELACRQTEVKALSTQVEELKDELVTQ 683
Query: 368 HPENAAEIK-----LTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHE-ED 421
++A+ IK L A+ K+ Q + S+ G ++A + E+
Sbjct: 684 RRKHASSIKDLTKQLQQARRKLDQVESGSYDKEVSSMGSRSSSSGSLNARSSAEDRSPEN 743
Query: 422 IDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDI 481
S++ V N A LI + + RK E I ++ KQ ++I
Sbjct: 744 TGSSVAV--------DNFPQVDKA--MLIERIVRLQKAHARKNEKIEFMEDHIKQLVEEI 793
Query: 482 HTLAQLISAYSL 493
++I +Y L
Sbjct: 794 RKKTKIIQSYIL 805
>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
Length = 1093
Score = 39.3 bits (90), Expect = 0.012
Identities = 67/332 (20%), Positives = 138/332 (41%), Gaps = 26/332 (7%)
Query: 79 SLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDECLAVYRDLVRN 138
SLS EKA E + +++ + ++ + LK+ + Q + E+ + RD +
Sbjct: 467 SLSKEKALLEEAFDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKK 526
Query: 139 SQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMKI 198
+ EE T L++ A EK + GL E +L + + + ++
Sbjct: 527 EIKNIKEELATRLNSSETADLLKEK-DEQIRGLMEEGEKLSKQQ----LHNSNIIKKLRA 581
Query: 199 LQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPT 258
K + L++ EE+ Q ++ G+ +++ + E ++ N +++ +
Sbjct: 582 KDKENENMVAKLNKKVKELEEELQHLKQVLDGKE----EVEKQHRENIKKLNSMVERQEK 637
Query: 259 DVGLLAVIANNIITINKD-QNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYT 317
D+G L V + + N+ Q DS K +LT+ + A + ++A A +
Sbjct: 638 DLGRLQVDMDELEEKNRSIQAALDSAYK-ELTDLH---------KANAAKDSEAQEAALS 687
Query: 318 NQAEQCRKISASL---QSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAE 374
+ + ++SA+L Q ++ + + IQ L Q T+ +E +H +
Sbjct: 688 REMKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLRHEIGELQ 747
Query: 375 IKLTMAQ---LKISQGNISKACLILRSIEELK 403
+L A+ ++SQ S +LR IE L+
Sbjct: 748 QRLQEAENRNQELSQSVSSTTRPLLRQIENLQ 779
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 39.3 bits (90), Expect = 0.012
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 31/109 (28%)
Query: 177 ELCYNTACALIG---------------QGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDP 221
E CYNTA L QG + +A+++ +KA ++
Sbjct: 303 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------- 347
Query: 222 QAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNI 270
E A H +A +LQ QG+ +EAL Y + I++ PT + + N +
Sbjct: 348 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 395
Score = 37.4 bits (85), Expect = 0.045
Identities = 87/398 (21%), Positives = 150/398 (37%), Gaps = 89/398 (22%)
Query: 94 IENALKTIESANQQTDKL---KELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTN 150
+E A++ SA Q L + G +L L R +E A Y + +Q ++ +N
Sbjct: 129 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-TQPNF-AVAWSN 186
Query: 151 LSAVVAAQS-------NWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMKILQKAE 203
L V AQ ++EK V L N A I G + + +I +A
Sbjct: 187 LGCVFNAQGEIWLAIHHFEKAVT-----------LDPNFLDAYINLGNVLKEARIFDRAV 235
Query: 204 DLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLL 263
R+LS + A++HG +A + QG + A+ Y + I+L+P
Sbjct: 236 AAYLRALSLSPNH---------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 286
Query: 264 AVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323
+AN + K+K + AE +N AL T+ A+
Sbjct: 287 CNLANAL------------KEKGSVAEAEDC-------------YNTALRLCPTH-ADSL 320
Query: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383
++ + Q + +A +L R KA+E+ EF+ H A+ ++
Sbjct: 321 NNLANIKREQGN------IEEAVRLYR-----KALEVFPEFAAAHSNLASVLQ------- 362
Query: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWYQNHQ 440
QG + +A ++ E ++ P A M +D+ A++ +T+AIQ
Sbjct: 363 -QQGKLQEA--LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ------ 413
Query: 441 PKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNP 478
+PA A+ G EAI+ + K P
Sbjct: 414 -INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 450
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 39.3 bits (90), Expect = 0.012
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 31/109 (28%)
Query: 177 ELCYNTACALIG---------------QGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDP 221
E CYNTA L QG + +A+++ +KA ++
Sbjct: 313 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------- 357
Query: 222 QAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNI 270
E A H +A +LQ QG+ +EAL Y + I++ PT + + N +
Sbjct: 358 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 405
Score = 37.4 bits (85), Expect = 0.045
Identities = 87/398 (21%), Positives = 150/398 (37%), Gaps = 89/398 (22%)
Query: 94 IENALKTIESANQQTDKL---KELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTN 150
+E A++ SA Q L + G +L L R +E A Y + +Q ++ +N
Sbjct: 139 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-TQPNF-AVAWSN 196
Query: 151 LSAVVAAQS-------NWEKVVPENLGLQEGTHELCYNTACALIGQGQLNQAMKILQKAE 203
L V AQ ++EK V L N A I G + + +I +A
Sbjct: 197 LGCVFNAQGEIWLAIHHFEKAVT-----------LDPNFLDAYINLGNVLKEARIFDRAV 245
Query: 204 DLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLL 263
R+LS + A++HG +A + QG + A+ Y + I+L+P
Sbjct: 246 AAYLRALSLSPNH---------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 296
Query: 264 AVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323
+AN + K+K + AE +N AL T+ A+
Sbjct: 297 CNLANAL------------KEKGSVAEAEDC-------------YNTALRLCPTH-ADSL 330
Query: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383
++ + Q + +A +L R KA+E+ EF+ H A+ ++
Sbjct: 331 NNLANIKREQGN------IEEAVRLYR-----KALEVFPEFAAAHSNLASVLQ------- 372
Query: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWYQNHQ 440
QG + +A ++ E ++ P A M +D+ A++ +T+AIQ
Sbjct: 373 -QQGKLQEA--LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ------ 423
Query: 441 PKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNP 478
+PA A+ G EAI+ + K P
Sbjct: 424 -INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 460
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 39.3 bits (90), Expect = 0.012
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 524 SAGATYIRKKGGKVTGDSQPKEQGQGD---------LKKKKKKKKGKLPKNYDPKVTPDP 574
S G T ++K+ G+V DS ++ G + K+K+ + K P P + D
Sbjct: 36 SRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDS 95
Query: 575 E------RWLPMRERSYYRGR-KKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPR 627
E W ++ +G+ +K +KK + K + SS+ D+S S+P
Sbjct: 96 ETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEV 155
Query: 628 PGSAATVSASTSN 640
S + S+S+S+
Sbjct: 156 SDSDSNSSSSSSD 168
Score = 31.2 bits (69), Expect = 3.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 450 IREAANFKLKYGRKKEAISDLQQLWKQNP----KDIHTLAQLISAYSLVDPEKAKALSKH 505
I+EA N+K +E + + ++ K P K L + A L D +KAK +
Sbjct: 479 IKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQ 538
Query: 506 LPSSDSMSLKVDVEALENSAGATYIRKK 533
L + + +D + +N + +YI ++
Sbjct: 539 LNELEERAEALDRQRTKNISAISYINQR 566
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 38.5 bits (88), Expect = 0.020
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 542 QPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKG 601
+ KE+ + KKKKKKKK K K K ++ R+R R RKK +KK + G
Sbjct: 104 EKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTG 163
Query: 602 TQGA 605
+GA
Sbjct: 164 NEGA 167
Score = 30.8 bits (68), Expect = 4.2
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 544 KEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQ 603
+E+ + K+KKKKKK K K K ++ ++R R RK+ +KK + K +
Sbjct: 102 REEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKK 161
Query: 604 GATAGA 609
GA
Sbjct: 162 TGNEGA 167
>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
sapiens]
Length = 833
Score = 38.1 bits (87), Expect = 0.027
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 23/206 (11%)
Query: 65 LNVINTHTKVLANNSLSFEKAYCEYR---LNRIENALKTIESANQQTDKLKELYGQVLYR 121
+ V+ V N L KA R N+ LK +E + + LY
Sbjct: 411 VEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYY 470
Query: 122 LERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHEL 178
+ + + Y D+ NS D Y+ TN V A ++EK E L E
Sbjct: 471 MGKDFAQASSYADIAVNS-DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 529
Query: 179 CYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQL 238
YN +L++A+ K + R S A + Q+A I +L
Sbjct: 530 LYNIGLTYEKLNRLDEALDCFLKLHAILRNS----------------AEVLYQIANIYEL 573
Query: 239 QGRTEEALQLYNQIIKLKPTDVGLLA 264
+A++ Q++ + PTD +L+
Sbjct: 574 MENPSQAIEWLMQVVSVIPTDPQVLS 599
>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
sapiens]
Length = 824
Score = 38.1 bits (87), Expect = 0.027
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 23/206 (11%)
Query: 65 LNVINTHTKVLANNSLSFEKAYCEYR---LNRIENALKTIESANQQTDKLKELYGQVLYR 121
+ V+ V N L KA R N+ LK +E + + LY
Sbjct: 402 VEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYY 461
Query: 122 LERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHEL 178
+ + + Y D+ NS D Y+ TN V A ++EK E L E
Sbjct: 462 MGKDFAQASSYADIAVNS-DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 520
Query: 179 CYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQL 238
YN +L++A+ K + R S A + Q+A I +L
Sbjct: 521 LYNIGLTYEKLNRLDEALDCFLKLHAILRNS----------------AEVLYQIANIYEL 564
Query: 239 QGRTEEALQLYNQIIKLKPTDVGLLA 264
+A++ Q++ + PTD +L+
Sbjct: 565 MENPSQAIEWLMQVVSVIPTDPQVLS 590
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 37.7 bits (86), Expect = 0.035
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 33/188 (17%)
Query: 489 SAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALEN-----------SAGATYIRKKGGKV 537
S SL +KA A + + ++ +K+ +++L + ++G+ + KK
Sbjct: 56 SGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAA-- 113
Query: 538 TGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQ 597
+G+ +PK + G K +K K PK TP ++S + KK KK
Sbjct: 114 SGEGKPKAKKAGAAKPRKPAGAAKKPKKVAGAATP---------KKSIKKTPKKVKK--- 161
Query: 598 IGKGTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKK 657
AG ++K V +P S A A P+ KP TK
Sbjct: 162 -----PATAAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKP---KVTKA 213
Query: 658 KQQQKKKK 665
K+ KKK
Sbjct: 214 KKAAPKKK 221
>gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo
sapiens]
Length = 504
Score = 37.0 bits (84), Expect = 0.059
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 18 VNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLAN 77
+N +G +GD+T A+ ++KIL++ D + C I+ G ++A++ + +K+ +
Sbjct: 162 LNAFG-SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 220
Query: 78 NSLSFEKAYC--------EYRLNRIENALKTIESAN------QQTDKLKELY--GQVLYR 121
N+ +F K E L+ + LK + +Q KL +L + L R
Sbjct: 221 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 280
Query: 122 LERYDECLAVYRDLVR 137
RY + + Y +++
Sbjct: 281 DGRYTDATSKYESVMK 296
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 37.0 bits (84), Expect = 0.059
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 11/170 (6%)
Query: 497 EKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKK 556
E AKA K +P + + V E KK + + PK + + D KK++
Sbjct: 805 EDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEA 864
Query: 557 KKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRK-KGKKKDQIGKGTQGATAGASSELDA 615
KK + PK PKV E + + S +K + + K ++ + A A + DA
Sbjct: 865 PKK-EAPK---PKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDA 920
Query: 616 SKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQQKKKK 665
+ P A S P +K A AP K +++K KK
Sbjct: 921 KPKEKTEVAKKEPDDAKAKEPS-----KPAEKKEA-APEKKDTKEEKAKK 964
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 36.6 bits (83), Expect = 0.077
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 541 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRK----KGKKKD 596
++ KE+ + D ++K +K+ K K+ E RE++ RGRK +G++K
Sbjct: 525 TEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEE-TEEREQATPRGRKTANSQGRRKG 583
Query: 597 QIGKGTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTS 639
+I + A AS+ A+ PP P P +T TS
Sbjct: 584 RITRSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETS 626
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 36.6 bits (83), Expect = 0.077
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 476 QNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGG 535
++P D + + L D EK + KH + S S + DV +E KK
Sbjct: 793 KDPNDPYRALDIDLDKPLADSEKLP-IQKHRNTETSKSPEKDVPMVE---------KKSK 842
Query: 536 KVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKK 595
K + ++ + D +KKK+K+K K PK PK + R R KGKKK
Sbjct: 843 KPKKKEKKHKEKERDKEKKKEKEKKKSPK---PK---------KKKHRKEKEERTKGKKK 890
Query: 596 DQIGKGTQGATAGASSELDASKTVSSPPTS 625
+ AG + A + PP S
Sbjct: 891 SKKQPPGSEEAAGEPVQNGAPEEEQLPPES 920
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 36.6 bits (83), Expect = 0.077
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 532 KKGGKVTGDSQPKEQGQGDLK-----KKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYY 586
KKG K G PKE +G + K+K K K PK PK T P+ P
Sbjct: 95 KKGKKDKGPKVPKESLEGSPRPPKKGKEKPPKATKKPKEKPPKATKKPKEKPP------- 147
Query: 587 RGRKKGKKKDQIGKGTQGATAGASSELDA-SKTVSSP-PTSPRPG 629
+ KK K+K K T+ +G + A S+T+ P P P PG
Sbjct: 148 KATKKPKEKPP--KATKKPPSGKRPPILAPSETLEWPLPPPPSPG 190
Score = 29.6 bits (65), Expect = 9.4
Identities = 31/84 (36%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 494 VDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRK-KGGKVTGDSQPKEQGQGDLK 552
V PEK K K KV E+LE S K K K T +PKE+ K
Sbjct: 85 VPPEKTKDKGKK--GKKDKGPKVPKESLEGSPRPPKKGKEKPPKAT--KKPKEKPPKATK 140
Query: 553 KKKKK--KKGKLPKNYDPKVTPDP 574
K K+K K K PK PK T P
Sbjct: 141 KPKEKPPKATKKPKEKPPKATKKP 164
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 36.6 bits (83), Expect = 0.077
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 514 LKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGD---LKKKKKKKKGKLPKNYDPKV 570
+KV E LE K G K + GD + + KKK KL +
Sbjct: 1240 VKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEA 1299
Query: 571 TPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGS 630
+ PE+ + R + G K++ GKG+ G + GA E P + G
Sbjct: 1300 SVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLG-SQGAKDE---------PEEELQKGM 1349
Query: 631 AATVSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGK 668
SN + +K + K++++KKKK K
Sbjct: 1350 GTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKK 1387
Score = 30.4 bits (67), Expect = 5.5
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 525 AGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRE-- 582
AGA + K GK DS+ + D +++ K L K + P +E
Sbjct: 246 AGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESP 305
Query: 583 RSYYRGRKKGKKKDQIGKGTQGATAGAS-SELDASKTVSSPPTSPRP-GSAATVSASTSN 640
R GK + K G S S + S + P +P G A V A+++
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAP 365
Query: 641 I----------IPPRHQKPAGAPATKKKQQQKKKKGGK 668
PPR PA A KQ++ + +
Sbjct: 366 AKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSE 403
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 36.6 bits (83), Expect = 0.077
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 514 LKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGD---LKKKKKKKKGKLPKNYDPKV 570
+KV E LE K G K + GD + + KKK KL +
Sbjct: 1279 VKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEA 1338
Query: 571 TPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGS 630
+ PE+ + R + G K++ GKG+ G + GA E P + G
Sbjct: 1339 SVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLG-SQGAKDE---------PEEELQKGM 1388
Query: 631 AATVSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGK 668
SN + +K + K++++KKKK K
Sbjct: 1389 GTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKK 1426
Score = 33.5 bits (75), Expect = 0.65
Identities = 62/300 (20%), Positives = 105/300 (35%), Gaps = 42/300 (14%)
Query: 405 KPGMVSAL--------VTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSL------- 449
KPGMVSA + S E D++ V ++ +SPA +
Sbjct: 187 KPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVG 246
Query: 450 -----IREAANFKLKYGRKKEAISDLQQLWKQNPKDIH--TLAQLISAYSLVDPEKAKAL 502
++ A K +K E S+ + ++ ++ T +Q+ ++ ++ A A
Sbjct: 247 DVTPQVKGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAP 306
Query: 503 SKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKL 562
+K P + A AGA + K GK DS+ + D +++ K L
Sbjct: 307 AKGTPGKGA------TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL 360
Query: 563 PKNYDPKVTPDPERWLPMRE--RSYYRGRKKGKKKDQIGKGTQGATAGAS-SELDASKTV 619
K + P +E R GK + K G S S + S +
Sbjct: 361 QAKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSE 420
Query: 620 SSPPTSPRP-GSAATVSASTSNI----------IPPRHQKPAGAPATKKKQQQKKKKGGK 668
P +P G A V A+++ PPR PA A KQ++ + +
Sbjct: 421 EEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSE 480
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 36.6 bits (83), Expect = 0.077
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 514 LKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGD---LKKKKKKKKGKLPKNYDPKV 570
+KV E LE K G K + GD + + KKK KL +
Sbjct: 1316 VKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEA 1375
Query: 571 TPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGS 630
+ PE+ + R + G K++ GKG+ G + GA E P + G
Sbjct: 1376 SVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLG-SQGAKDE---------PEEELQKGM 1425
Query: 631 AATVSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGK 668
SN + +K + K++++KKKK K
Sbjct: 1426 GTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKK 1463
Score = 33.5 bits (75), Expect = 0.65
Identities = 62/300 (20%), Positives = 105/300 (35%), Gaps = 42/300 (14%)
Query: 405 KPGMVSAL--------VTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSL------- 449
KPGMVSA + S E D++ V ++ +SPA +
Sbjct: 187 KPGMVSAGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVG 246
Query: 450 -----IREAANFKLKYGRKKEAISDLQQLWKQNPKDIH--TLAQLISAYSLVDPEKAKAL 502
++ A K +K E S+ + ++ ++ T +Q+ ++ ++ A A
Sbjct: 247 DVTPQVKGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAP 306
Query: 503 SKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKL 562
+K P + A AGA + K GK DS+ + D +++ K L
Sbjct: 307 AKGTPGKGA------TPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALL 360
Query: 563 PKNYDPKVTPDPERWLPMRE--RSYYRGRKKGKKKDQIGKGTQGATAGAS-SELDASKTV 619
K + P +E R GK + K G S S + S +
Sbjct: 361 QAKASGKTSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSE 420
Query: 620 SSPPTSPRP-GSAATVSASTSNI----------IPPRHQKPAGAPATKKKQQQKKKKGGK 668
P +P G A V A+++ PPR PA A KQ++ + +
Sbjct: 421 EEAPAQAKPSGKAPQVRAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSE 480
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 36.6 bits (83), Expect = 0.077
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 514 LKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGD---LKKKKKKKKGKLPKNYDPKV 570
+KV E LE K G K + GD + + KKK KL +
Sbjct: 1239 VKVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTPRSKKKKKLGAGEGGEA 1298
Query: 571 TPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGS 630
+ PE+ + R + G K++ GKG+ G + GA E P + G
Sbjct: 1299 SVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLG-SQGAKDE---------PEEELQKGM 1348
Query: 631 AATVSASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGK 668
SN + +K + K++++KKKK K
Sbjct: 1349 GTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKK 1386
Score = 30.4 bits (67), Expect = 5.5
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 525 AGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRE-- 582
AGA + K GK DS+ + D +++ K L K + P +E
Sbjct: 246 AGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESP 305
Query: 583 RSYYRGRKKGKKKDQIGKGTQGATAGAS-SELDASKTVSSPPTSPRP-GSAATVSASTSN 640
R GK + K G S S + S + P +P G A V A+++
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAP 365
Query: 641 I----------IPPRHQKPAGAPATKKKQQQKKKKGGK 668
PPR PA A KQ++ + +
Sbjct: 366 AKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSE 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,315,363
Number of Sequences: 37866
Number of extensions: 1167767
Number of successful extensions: 6609
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 6023
Number of HSP's gapped (non-prelim): 721
length of query: 671
length of database: 18,247,518
effective HSP length: 109
effective length of query: 562
effective length of database: 14,120,124
effective search space: 7935509688
effective search space used: 7935509688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.