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Search of human proteins with 109452608
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109452608 chromosome 14 open reading frame 140 isoform b
[Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109452608 chromosome 14 open reading frame 140 isoform b [Hom... 561 e-160
gi|109452611 chromosome 14 open reading frame 140 isoform a [Hom... 561 e-160
gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-l... 39 0.006
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 37 0.014
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 36 0.042
gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-l... 35 0.071
gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-l... 35 0.071
gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-l... 35 0.071
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 35 0.093
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 35 0.093
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 34 0.12
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 33 0.21
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 33 0.21
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 33 0.35
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 33 0.35
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 32 0.46
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 32 0.46
gi|21361478 septin 6 isoform B [Homo sapiens] 32 0.60
gi|22035581 septin 6 isoform D [Homo sapiens] 32 0.60
gi|22035579 septin 6 isoform A [Homo sapiens] 32 0.60
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 32 0.60
gi|22035577 septin 6 isoform A [Homo sapiens] 32 0.60
gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Hom... 32 0.79
gi|148746195 trichohyalin [Homo sapiens] 32 0.79
gi|145309298 coiled-coil domain containing 16 [Homo sapiens] 32 0.79
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 32 0.79
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 32 0.79
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 32 0.79
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 31 1.0
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 31 1.0
>gi|109452608 chromosome 14 open reading frame 140 isoform b [Homo
sapiens]
Length = 275
Score = 561 bits (1446), Expect = e-160
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN 60
MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN
Sbjct: 1 MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN 60
Query: 61 KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA 120
KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA
Sbjct: 61 KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA 120
Query: 121 NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV 180
NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV
Sbjct: 121 NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV 180
Query: 181 RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK 240
RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK
Sbjct: 181 RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK 240
Query: 241 TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG 275
TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG
Sbjct: 241 TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG 275
>gi|109452611 chromosome 14 open reading frame 140 isoform a [Homo
sapiens]
Length = 456
Score = 561 bits (1446), Expect = e-160
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN 60
MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN
Sbjct: 1 MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSN 60
Query: 61 KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA 120
KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA
Sbjct: 61 KELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKA 120
Query: 121 NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV 180
NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV
Sbjct: 121 NNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGV 180
Query: 181 RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK 240
RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK
Sbjct: 181 RNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKK 240
Query: 241 TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG 275
TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG
Sbjct: 241 TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG 275
>gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 547
Score = 38.5 bits (88), Expect = 0.006
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 141 LKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGVRNQGNFSVVG------TVLA 194
L+ + R + G+ TD H R E S++ VR Q + G + +
Sbjct: 143 LEVQIQRLNIQKGKLNTDLYHT--KRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVT 200
Query: 195 ATQAEKAVANFD-----RTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQ 249
ATQ +KA F RTEW LE+ +R +Q LL+ +L + +E L+ +Q
Sbjct: 201 ATQKKKAERQFSSRSKARTEW-----------KLEQSMR-EQALLKAQLTQLKESLKEVQ 248
Query: 250 TQKEQAKENENGE 262
++++ E+ GE
Sbjct: 249 LERDEYAEHLKGE 261
>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
Length = 625
Score = 37.4 bits (85), Expect = 0.014
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 172 EFSSRNFGVRNQGNFSVVG------------TVLAATQAEKAVANFD------RTEWVQI 213
EFS +G + G FS V TVLA + ++ R W Q+
Sbjct: 99 EFSKERYG-KEAGKFSAVSEGQGDPPGGPAPTVLAPMPLAEVELKWEMEKEEKRLLWEQL 157
Query: 214 RRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKI 266
+ LE++ ++ ++ + L KLKK +E R+QT+KE + +++++
Sbjct: 158 QGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEEL 210
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 35.8 bits (81), Expect = 0.042
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 214 RRLEAAGESLEEEIRRKQILLR-------GKLKKTEEELRRIQTQKEQAKENENGELQKI 266
RRL+ A ESL+++ + ++ L+ +LK EEEL+ ++ Q EQA+E + L+ I
Sbjct: 527 RRLKEAEESLQQQQQEQEEALKQCREQHAAELKGKEEELQDVRDQLEQAQEERDCHLKTI 586
Query: 267 ILPRSRVK 274
+ VK
Sbjct: 587 SSLKQEVK 594
Score = 35.0 bits (79), Expect = 0.071
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 207 RTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKI 266
R W Q++ LE++ ++ ++ + L KLKK +E R+QT+KE + +++++
Sbjct: 204 RLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEEL 263
>gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 3 [Homo sapiens]
Length = 601
Score = 35.0 bits (79), Expect = 0.071
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 141 LKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGVRNQGNFSVVG------TVLA 194
L+ + R + G+ TD H R E S++ VR Q + G + +
Sbjct: 135 LEVQIQRLNIQKGKLNTDLYHT--KRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVT 192
Query: 195 ATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQ 254
ATQ +KA R++ A E E+ R+Q LL+ +L + +E L+ +Q ++++
Sbjct: 193 ATQKKKAERFSSRSK--------ARTEWKLEQSMREQALLKAQLTQLKESLKEVQLERDE 244
Query: 255 AKENENGE 262
E+ GE
Sbjct: 245 YAEHLKGE 252
>gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 4 [Homo sapiens]
Length = 590
Score = 35.0 bits (79), Expect = 0.071
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 141 LKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGVRNQGNFSVVG------TVLA 194
L+ + R + G+ TD H R E S++ VR Q + G + +
Sbjct: 123 LEVQIQRLNIQKGKLNTDLYHT--KRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVT 180
Query: 195 ATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQ 254
ATQ +KA R++ A E E+ R+Q LL+ +L + +E L+ +Q ++++
Sbjct: 181 ATQKKKAERFSSRSK--------ARTEWKLEQSMREQALLKAQLTQLKESLKEVQLERDE 232
Query: 255 AKENENGE 262
E+ GE
Sbjct: 233 YAEHLKGE 240
>gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 2 [Homo sapiens]
Length = 629
Score = 35.0 bits (79), Expect = 0.071
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 141 LKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGVRNQGNFSVVG------TVLA 194
L+ + R + G+ TD H R E S++ VR Q + G + +
Sbjct: 135 LEVQIQRLNIQKGKLNTDLYHT--KRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVT 192
Query: 195 ATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQ 254
ATQ +KA R++ A E E+ R+Q LL+ +L + +E L+ +Q ++++
Sbjct: 193 ATQKKKAERFSSRSK--------ARTEWKLEQSMREQALLKAQLTQLKESLKEVQLERDE 244
Query: 255 AKENENGE 262
E+ GE
Sbjct: 245 YAEHLKGE 252
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 34.7 bits (78), Expect = 0.093
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 193 LAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQK 252
+AATQ +K R++ + R+LE + R+QILL+G + + +E L+ +Q ++
Sbjct: 179 VAATQKKKPDGFSSRSKALLKRQLEQS--------IREQILLKGHVTQLKESLKEVQLER 230
Query: 253 EQAKENENGE 262
+Q E GE
Sbjct: 231 DQYAEQIKGE 240
Score = 31.6 bits (70), Expect = 0.79
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 214 RRLEAAGESLEEEIRRKQ---ILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPR 270
+ LE L+ ++ Q +L RG+ ++ E+ R+Q Q+E+ +E E LQ++ P+
Sbjct: 305 KELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREK-RLQQLAEPQ 363
Query: 271 S 271
S
Sbjct: 364 S 364
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 34.7 bits (78), Expect = 0.093
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 193 LAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQK 252
+AATQ +K R++ + R+LE + R+QILL+G + + +E L+ +Q ++
Sbjct: 179 VAATQKKKPDGFSSRSKALLKRQLEQS--------IREQILLKGHVTQLKESLKEVQLER 230
Query: 253 EQAKENENGE 262
+Q E GE
Sbjct: 231 DQYAEQIKGE 240
Score = 31.6 bits (70), Expect = 0.79
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 214 RRLEAAGESLEEEIRRKQ---ILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPR 270
+ LE L+ ++ Q +L RG+ ++ E+ R+Q Q+E+ +E E LQ++ P+
Sbjct: 305 KELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREK-RLQQLAEPQ 363
Query: 271 S 271
S
Sbjct: 364 S 364
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 34.3 bits (77), Expect = 0.12
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 214 RRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPRSR 272
R EA E E RR++ R K + +EE R+Q QKE+A+ E ++ L R +
Sbjct: 638 REAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLEREK 696
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 33.5 bits (75), Expect = 0.21
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 189 VGTVLAATQAEKAVANFDRTEWVQIRRLEAAGE-SLEEEIRRKQILLRGKLKKTEEELRR 247
V T++ A + A AN + + ++ LE + E S ++ + K+ + K KK +EE +R
Sbjct: 1410 VETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKR 1469
Query: 248 IQTQKEQAKENENGEL 263
Q + E+ K EN EL
Sbjct: 1470 KQEEDEENKPKENSEL 1485
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 33.5 bits (75), Expect = 0.21
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 189 VGTVLAATQAEKAVANFDRTEWVQIRRLEAAGE-SLEEEIRRKQILLRGKLKKTEEELRR 247
V T++ A + A AN + + ++ LE + E S ++ + K+ + K KK +EE +R
Sbjct: 1410 VETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKR 1469
Query: 248 IQTQKEQAKENENGEL 263
Q + E+ K EN EL
Sbjct: 1470 KQEEDEENKPKENSEL 1485
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 32.7 bits (73), Expect = 0.35
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 43/168 (25%)
Query: 119 KANNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREF----- 173
K ++QDF P K V R PL +K+ S ++ + D + PEP
Sbjct: 198 KTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSD--GAKPEPVAMARSAS 255
Query: 174 SSRNFGVRNQGNFSVVGTVLAATQAEKAVAN-----------------------FDR-TE 209
SS + + + SV AEK + DR +E
Sbjct: 256 SSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISE 315
Query: 210 WVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKE 257
W RR EA LE RR+Q EEELRR++ Q+++ KE
Sbjct: 316 WK--RRDEARRRELEARRRREQ----------EEELRRLREQEKEEKE 351
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 32.7 bits (73), Expect = 0.35
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 43/168 (25%)
Query: 119 KANNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREF----- 173
K ++QDF P K V R PL +K+ S ++ + D + PEP
Sbjct: 198 KTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSD--GAKPEPVAMARSAS 255
Query: 174 SSRNFGVRNQGNFSVVGTVLAATQAEKAVAN-----------------------FDR-TE 209
SS + + + SV AEK + DR +E
Sbjct: 256 SSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISE 315
Query: 210 WVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKE 257
W RR EA LE RR+Q EEELRR++ Q+++ KE
Sbjct: 316 WK--RRDEARRRELEARRRREQ----------EEELRRLREQEKEEKE 351
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 32.3 bits (72), Expect = 0.46
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 214 RRLEAAGESLEEEIRRKQ---ILLRGKLKKTEEELRRIQT----QKEQAKENENGELQ 264
RRLEA LEEE+ +Q L+ +LKK ++ +I T ++ A++NEN Q
Sbjct: 1725 RRLEARIAQLEEELEEEQGNTELINDRLKKANLQIDQINTDLNLERSHAQKNENARQQ 1782
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 32.3 bits (72), Expect = 0.46
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 183 QGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTE 242
Q V T+L +AEK F + +L+ E L+EE R+K + L ++++ E
Sbjct: 1286 QNELDNVSTLLE--EAEKKGIKFAKDAASLESQLQDTQELLQEETRQK-LNLSSRIRQLE 1342
Query: 243 EELRRIQTQKEQAKE-NENGELQKIIL 268
EE +Q Q+E+ +E +N E Q + L
Sbjct: 1343 EEKNSLQEQQEEEEEARKNLEKQVLAL 1369
>gi|21361478 septin 6 isoform B [Homo sapiens]
Length = 434
Score = 32.0 bits (71), Expect = 0.60
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 222 SLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQK 265
SL+E K+ G+L+K EEE+R++ Q+ + KE E E +K
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
>gi|22035581 septin 6 isoform D [Homo sapiens]
Length = 429
Score = 32.0 bits (71), Expect = 0.60
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 222 SLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQK 265
SL+E K+ G+L+K EEE+R++ Q+ + KE E E +K
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
>gi|22035579 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 32.0 bits (71), Expect = 0.60
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 222 SLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQK 265
SL+E K+ G+L+K EEE+R++ Q+ + KE E E +K
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 32.0 bits (71), Expect = 0.60
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 221 ESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKII 267
E LE E +R++ L + + K+ + ELRR Q + E+ + E +LQ+ I
Sbjct: 310 EELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKI 356
>gi|22035577 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 32.0 bits (71), Expect = 0.60
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 222 SLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQK 265
SL+E K+ G+L+K EEE+R++ Q+ + KE E E +K
Sbjct: 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
>gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Homo
sapiens]
Length = 314
Score = 31.6 bits (70), Expect = 0.79
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 214 RRLEAAGESLEEEIRRKQ---ILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPR 270
+ LE L+ ++ Q +L RG+ ++ E+ R+Q Q+E+ +E E LQ++ P+
Sbjct: 17 KELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREQEK-RLQQLAEPQ 75
Query: 271 S 271
S
Sbjct: 76 S 76
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 31.6 bits (70), Expect = 0.79
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 224 EEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPR 270
E+++RR+Q R +L K EEE R Q ++EQ + E E + +L R
Sbjct: 535 EQQLRREQEERREQLLKREEEKRLEQERREQRLKREQEERRDQLLKR 581
Score = 30.4 bits (67), Expect = 1.8
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 219 AGESLEEEIRRKQILLR---GKLKKTEEELRRIQTQKEQAKENE 259
A +L+E++R++Q LL+ +L++ E E RR Q Q+ Q +E E
Sbjct: 891 AKPALQEQLRKEQQLLQEEEEELQREEREKRRRQEQERQYREEE 934
Score = 29.6 bits (65), Expect = 3.0
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 212 QIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQK 265
Q+RR E E E+++RR+Q L R + + E++LRR Q + + + +L++
Sbjct: 363 QLRR-EQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRR 415
Score = 28.9 bits (63), Expect = 5.1
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 207 RTEWVQIRRLEAAGESLEEEIRRKQILLR---GKLKKTEEELRRIQTQKEQAKENENGEL 263
+ E ++RR E ++ +RR+Q L R + ++ +EE R Q ++EQ +E +L
Sbjct: 280 KLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQL 339
Query: 264 QK 265
++
Sbjct: 340 RR 341
Score = 28.9 bits (63), Expect = 5.1
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 207 RTEWVQIRRLEAAGESLEEE--IRRKQILLRGKLKKTEEELRRIQTQKEQAKENE 259
R E Q+RR E + L+EE +RR+++ + K EEE R +T++EQ + E
Sbjct: 1694 REEEQQLRRQERERKFLQEEQQLRRQEL----ERKFREEEQLRQETEQEQLRRQE 1744
Score = 28.5 bits (62), Expect = 6.7
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 212 QIRRLEAAGESLEEEIRRKQILLRGK--LKKTEEELRRIQTQKEQAKENENGELQK 265
Q R E E E+++RR+Q R + ++ EEE R Q ++EQ +E +L++
Sbjct: 324 QQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRR 379
Score = 28.5 bits (62), Expect = 6.7
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 224 EEEIRRKQILLRGKLKKTEEELRRIQTQK--EQAKENENGE 262
E+++RR+Q L R + + E++LRR Q ++ EQ E E E
Sbjct: 404 EQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERRE 444
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 207 RTEWVQIRRLEAAG--ESLEEEIRRKQILLRGKLKKTEEELRRIQ--TQKEQAKENENGE 262
R W+++ E E E+++RR+Q R + K +EE R+Q + EQ E E
Sbjct: 485 RERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEE 544
Query: 263 LQKIILPRSRVK 274
++ +L R K
Sbjct: 545 RREQLLKREEEK 556
Score = 28.1 bits (61), Expect = 8.7
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 205 FDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQ 264
F E + R+ E EE+++ ++ + +L++ EE+LR+++ Q+ + + E + Q
Sbjct: 238 FQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQ 297
Query: 265 K 265
+
Sbjct: 298 Q 298
>gi|145309298 coiled-coil domain containing 16 [Homo sapiens]
Length = 372
Score = 31.6 bits (70), Expect = 0.79
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 225 EEIRRKQILLRGKLKK--TEEELRRIQTQKEQAKENENGELQKIILPRSRVKG 275
E++R +Q ++ KLK+ T +EL++ ++E A ++ GELQ ++ RVKG
Sbjct: 319 EKLRNRQDEIKNKLKEILTIKELQK--KEEENADSDDEGELQDLLSQDWRVKG 369
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 31.6 bits (70), Expect = 0.79
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 187 SVVGTVLAATQAEKAVANFDRTEWVQIRRLE--AAGESLEEEIRRKQILLRGKLKKTEEE 244
+++G + A T+ A E+++ R+LE E EE RR+++ + K+ EE
Sbjct: 197 TLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRREL----EKKRLREE 252
Query: 245 LRRIQTQKEQAKENENGELQKIILPRSRVK 274
+R + ++E+ K+ E + +KI R+K
Sbjct: 253 EKRRRREEERCKKKETDKQKKIAEKEVRIK 282
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 31.6 bits (70), Expect = 0.79
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 187 SVVGTVLAATQAEKAVANFDRTEWVQIRRLE--AAGESLEEEIRRKQILLRGKLKKTEEE 244
+++G + A T+ A E+++ R+LE E EE RR+++ + K+ EE
Sbjct: 164 TLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRREL----EKKRLREE 219
Query: 245 LRRIQTQKEQAKENENGELQKIILPRSRVK 274
+R + ++E+ K+ E + +KI R+K
Sbjct: 220 EKRRRREEERCKKKETDKQKKIAEKEVRIK 249
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 31.6 bits (70), Expect = 0.79
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 20/94 (21%)
Query: 197 QAEKAVANFDRTEWVQIRRLEAAGESLEE-EIRRKQIL----------------LRGKLK 239
+A++ N + + Q+R L+A + LE+ +I++++IL L K +
Sbjct: 1483 RAQETAVNLVKADQ-QLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKE 1541
Query: 240 KTEEELRRIQTQKEQAKENENGELQKIILPRSRV 273
K EEL+++Q E A+ NE+ LQ +L S V
Sbjct: 1542 KLTEELQKLQKDIEMAERNEDHHLQ--VLKESEV 1573
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 31.2 bits (69), Expect = 1.0
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 212 QIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENE 259
+IR LE + EE++R + ++ + +K +E+ +IQ Q+E+ +E E
Sbjct: 435 KIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQE 482
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 31.2 bits (69), Expect = 1.0
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 212 QIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENE 259
+IR LE + EE++R + ++ + +K +E+ +IQ Q+E+ +E E
Sbjct: 435 KIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQE 482
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,599,955
Number of Sequences: 37866
Number of extensions: 544843
Number of successful extensions: 2903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2433
Number of HSP's gapped (non-prelim): 552
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.