Guide to the Human Genome
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Name: SEPT6 Sequence: fasta or formatted (427aa) NCBI GI: 22035579
Description:

septin 6 isoform A

Referenced in:

Additional Cell Cycle Functions

Other entries for this name:
alt prot [434aa] septin 6 isoform B
alt mRNA [427aa] septin 6 isoform A
alt prot [429aa] septin 6 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         23           2
 C cysteine            1.4          6           1
 D aspartate           5.9         25           2
 E glutamate          10.1         43           3
 F phenylalanine       4.4         19           1
 G glycine             5.4         23           2
 H histidine           2.8         12           1
 I isoleucine          4.9         21           2
 K lysine             10.3         44           3
 L leucine             9.4         40           2
 M methionine          2.6         11           2
 N asparagine          3.7         16           1
 P proline             2.8         12           1
 Q glutamine           5.9         25           1
 R arginine            4.7         20           2
 S serine              5.6         24           1
 T threonine           6.1         26           1
 V valine              6.1         26           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   septin 6 isoform A 
SEPT6                 1.000   septin 6 isoform B 
SEPT6                 1.000   septin 6 isoform D 
SEPT6                 1.000   septin 6 isoform A 
SEPT11                0.835   septin 11 
SEPT8                 0.771   septin 8 isoform a 
SEPT8                 0.771   septin 8 isoform b 
SEPT8                 0.768   septin 8 isoform c 
SEPT10                0.737   septin 10 isoform 2 
SEPT10                0.731   septin 10 isoform 1 
SEPT8                 0.677   septin 8 isoform d 
SEPT14                0.610   septin 14 
SEPT7                 0.350   cell division cycle 10 isoform 1 
SEPT7                 0.350   cell division cycle 10 isoform 2 
SEPT9                 0.285   septin 9 isoform f 
SEPT9                 0.285   septin 9 isoform d 
SEPT9                 0.285   septin 9 isoform e 
SEPT9                 0.285   septin 9 isoform b 
SEPT9                 0.285   septin 9 isoform e 
SEPT9                 0.285   septin 9 isoform a 
SEPT9                 0.285   septin 9 isoform c 
SEPT5                 0.285   septin 5 
SEPT4                 0.274   septin 4 isoform 1 
SEPT4                 0.274   septin 4 isoform 3 
SEPT3                 0.273   septin 3 isoform A 
SEPT3                 0.273   septin 3 isoform B 
SEPT2                 0.269   septin 2 
SEPT2                 0.269   septin 2 
SEPT2                 0.269   septin 2 
SEPT2                 0.269   septin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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