Guide to the Human Genome
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Search of human proteins with 14277694

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
         (626 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153791282 nuclear RNA export factor 2B [Homo sapiens]             1282   0.0  
gi|14277694 nuclear RNA export factor 2 [Homo sapiens]               1282   0.0  
gi|13430854 nuclear RNA export factor 2 [Homo sapiens]               1282   0.0  
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]      720   0.0  
gi|254039592 nuclear RNA export factor 5 [Homo sapiens]               610   e-175
gi|11545757 nuclear RNA export factor 3 [Homo sapiens]                545   e-155
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]     363   e-100
gi|4826651 hypothetical protein LOC755 [Homo sapiens]                  42   0.002
gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isofo...    37   0.055
gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isofor...    37   0.055
gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isofo...    37   0.055
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil...    36   0.12 
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s...    36   0.12 
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa...    36   0.12 
gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens]    35   0.16 
gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens]      35   0.16 
gi|24308207 leucine rich repeat containing 47 [Homo sapiens]           35   0.27 
gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]      34   0.35 
gi|11321571 slit homolog 3 [Homo sapiens]                              34   0.46 
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom...    33   0.60 
gi|4826876 osteomodulin [Homo sapiens]                                 33   0.60 
gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]         33   0.79 
gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]         33   0.79 
gi|58331268 excision repair protein ERCC6-like [Homo sapiens]          33   1.0  
gi|164607156 axonemal dynein light chain 1 [Homo sapiens]              33   1.0  
gi|66472382 nischarin [Homo sapiens]                                   32   1.3  
gi|4503743 flightless I homolog [Homo sapiens]                         32   2.3  
gi|5901992 keratocan [Homo sapiens]                                    32   2.3  
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami...    32   2.3  
gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]                32   2.3  

>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
          Length = 626

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
           MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60

Query: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
           NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120

Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
           TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180

Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
           SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240

Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
           PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300

Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
           LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360

Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
           LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420

Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
           FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480

Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
           LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540

Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
           VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600

Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
           YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626


>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
          Length = 626

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
           MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60

Query: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
           NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120

Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
           TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180

Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
           SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240

Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
           PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300

Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
           LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360

Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
           LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420

Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
           FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480

Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
           LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540

Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
           VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600

Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
           YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626


>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
          Length = 626

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60
           MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE
Sbjct: 1   MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQE 60

Query: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120
           NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY
Sbjct: 61  NDGSVEMRDVHKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGY 120

Query: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180
           TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV
Sbjct: 121 TRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDV 180

Query: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240
           SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD
Sbjct: 181 SYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFD 240

Query: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300
           PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT
Sbjct: 241 PDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKT 300

Query: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360
           LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE
Sbjct: 301 LNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRE 360

Query: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420
           LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
Sbjct: 361 LSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC 420

Query: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480
           FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD
Sbjct: 421 FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHD 480

Query: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540
           LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF
Sbjct: 481 LSSILVDVWCQTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELF 540

Query: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600
           VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN
Sbjct: 541 VRDASPQETQSAFSIPVSTLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWN 600

Query: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626
           YTRAGQAFTMLQTEGKIPAEAFKQIS
Sbjct: 601 YTRAGQAFTMLQTEGKIPAEAFKQIS 626


>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
          Length = 619

 Score =  720 bits (1858), Expect = 0.0
 Identities = 358/598 (59%), Positives = 452/598 (75%), Gaps = 1/598 (0%)

Query: 26  QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
           Q +KKG   FR  + + +     GG     S  +E+DG V M D     ++R+ PY+ R 
Sbjct: 20  QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79

Query: 86  ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
            RR   WH  D I +T  R+R PPER  +  +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 80  NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139

Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
           QS CS  FTP++FHY   RA FFV+DAS ASALK V+YKI D EN++I I +N S  P++
Sbjct: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199

Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
           + N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259

Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
           IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S  EL K+KGLKLEE
Sbjct: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319

Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
           LWL+GN LC TF DQS Y+SAIR+ FPKLLRLDG EL  P+  D+++  T+ PCK ++ G
Sbjct: 320 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFG 379

Query: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
           +E LK LVL FLQQYY+IYDSGDRQGLL AYHD AC SL+IPF P++ A SSL +YF+DS
Sbjct: 380 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439

Query: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
           RN+K LKDP L+  LL+ T+ ++V  L+ LPKTQHD++S +VD+  QT  +LCFSVNGVF
Sbjct: 440 RNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 499

Query: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
           KEV+G+S+ S+ AFTRTFIA P S+S LCIVNDELFVR+AS +E Q AF++P  T SSS 
Sbjct: 500 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 559

Query: 565 EPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
            P+LS EQQEM+QAFS QSGM LEWSQKCLQDN W+YTR+ QAFT L+ +G+IP  AF
Sbjct: 560 VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617


>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
          Length = 365

 Score =  610 bits (1574), Expect = e-175
 Identities = 314/382 (82%), Positives = 327/382 (85%), Gaps = 37/382 (9%)

Query: 112 MSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHCSDRFTPVDFHYVRNRACFFVQDA 171
           M +NTQD   R WFKVTIPYGIKYDKAWLMNSIQS+CS  FTPVDFHY+RNRACFFVQ A
Sbjct: 1   MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60

Query: 172 SAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 231
           SAASALKDVSYKIYDDENQKICIFV+H TAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
Sbjct: 61  SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120

Query: 232 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI 291
           LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI ERNFPELLSLNLCNNKLYQLDGLSDI
Sbjct: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180

Query: 292 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 351
           TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
Sbjct: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240

Query: 352 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGL 411
           KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ             
Sbjct: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287

Query: 412 LGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTK-RDIVDS 470
                                  S+LCKYF+DSRN+K LKDPYL+ +LL+ TK    VDS
Sbjct: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324

Query: 471 LSALPKTQHDLSSILVDVWCQT 492
           LSALP+TQHD +SILVD+W QT
Sbjct: 325 LSALPETQHDFTSILVDMWYQT 346


>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
          Length = 531

 Score =  545 bits (1403), Expect = e-155
 Identities = 290/552 (52%), Positives = 373/552 (67%), Gaps = 40/552 (7%)

Query: 26  QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIR- 84
           Q R +    ++  F  RS     G +    SH Q+ DG   M   H D  +R+TPY+I  
Sbjct: 17  QRRARCWDIYQRRFSSRSEPVNPGMHSS--SH-QQQDGDAAMHGAHMDSPVRYTPYTISP 73

Query: 85  CERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
             R+  +  +D+  +   R +KPPER+M  N  DG   +WFK+T+P+GIKY++ WL+N I
Sbjct: 74  YNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLI 133

Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
           Q+ CS  F PV+FHY    A FFV++AS A ALK+VS KI+D++N+KI IFVN +  P+ 
Sbjct: 134 QNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF 193

Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
           V  +LK  ++E +KL MN++ +VSQ+ALD+Q L F PD++ RD  +  N R CMAA+L +
Sbjct: 194 VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDV 253

Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
            E N P ++S                                    A E+ K KG++  E
Sbjct: 254 HEENIPTVMS------------------------------------AGEMDKWKGIEPGE 277

Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
              + +P+C+TFSD S+ +++I + FPKLL LDG++     +   ++ + +  CK +F G
Sbjct: 278 KCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFG 337

Query: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
           SE LK+LVLQFLQQYY IYDSGDRQGLL AYHDEACFSL+IPF+P+DSAPSS CK+F+DS
Sbjct: 338 SEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDS 397

Query: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
           RN+K LKDPYL+GELL+ TK DIVDSLSALPKTQHDLSS LVD+W QTE MLCFSVNGVF
Sbjct: 398 RNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVF 457

Query: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
           KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND+LFVRD S Q TQSA    V T  SSS
Sbjct: 458 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSS 517

Query: 565 EPSLSQEQQEMV 576
            P+ SQEQQ+M+
Sbjct: 518 VPAFSQEQQKML 529


>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
          Length = 356

 Score =  363 bits (932), Expect = e-100
 Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 1/325 (0%)

Query: 26  QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
           Q +KKG   FR  + + +     GG     S  +E+DG V M D     ++R+ PY+ R 
Sbjct: 20  QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79

Query: 86  ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
            RR   WH  D I +T  R+R PPER  +  +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 80  NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139

Query: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
           QS CS  FTP++FHY   RA FFV+DAS ASALK V+YKI D EN++I I +N S  P++
Sbjct: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199

Query: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
           + N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259

Query: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
           IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S  EL K+KGLKLEE
Sbjct: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319

Query: 325 LWLEGNPLCSTFSDQSAYVSAIRDC 349
           LWL+GN LC TF DQS Y+ ++  C
Sbjct: 320 LWLDGNSLCDTFRDQSTYIRSVVAC 344


>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
          Length = 256

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 252 LNRRNCMAATLKIIE--RNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE 309
           + + NC  + L  I   +  P L  + L  N +  L+ +S    +  ++  L L +N++ 
Sbjct: 20  VRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVS----RCQRLSELYLRRNRIP 75

Query: 310 SAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELS 362
           S  EL  +KGL +L  LWL  NP C T      Y   +    P+L +LD + ++
Sbjct: 76  SLAELFYLKGLPRLRVLWLAENPCCGT--SPHRYRMTVLRTLPRLQKLDNQAVT 127


>gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isoform
           1 [Homo sapiens]
          Length = 790

 Score = 37.0 bits (84), Expect = 0.055
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)

Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
           P++  LNLS N LES +W+   V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153


>gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isoform 2
           [Homo sapiens]
          Length = 796

 Score = 37.0 bits (84), Expect = 0.055
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)

Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
           P++  LNLS N LES +W+   V+GL L+EL L GNPL CS
Sbjct: 115 PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 153


>gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isoform
           3 [Homo sapiens]
          Length = 760

 Score = 37.0 bits (84), Expect = 0.055
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 4/41 (9%)

Query: 296 PKVKTLNLSKNKLES-AWELGKVKGLKLEELWLEGNPL-CS 334
           P++  LNLS N LES +W+   V+GL L+EL L GNPL CS
Sbjct: 85  PRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHCS 123


>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
           member B [Homo sapiens]
          Length = 251

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK-LEELWLE 328
           P+L  L L  N+++   GL  + EK P +  LNLS NKL+    L  +K L+ L+ L L 
Sbjct: 64  PKLKKLELSENRIF--GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 121

Query: 329 GNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDS 371
               C   ++ + Y  ++    P+L  LDG +       D D+
Sbjct: 122 N---CEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 160


>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
           sapiens]
          Length = 343

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 254 RRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 294
           R N + +TL I   N P+L +L L  N L +++GL D+                   + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243

Query: 295 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 353
              ++ LNL  N + +  EL K++ L KL  L L  NP     +D+++Y        P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299

Query: 354 LRLD 357
            RLD
Sbjct: 300 ERLD 303



 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
           P L   +   N++   +G+S      P+++TLNL  N +     L   K + L  + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188

Query: 330 NPLCST 335
           N L ST
Sbjct: 189 NQLEST 194


>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
           sapiens]
          Length = 343

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 254 RRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDI-------------------TEK 294
           R N + +TL I   N P+L +L L  N L +++GL D+                   + +
Sbjct: 187 RGNQLESTLGI---NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243

Query: 295 APKVKTLNLSKNKLESAWELGKVKGL-KLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKL 353
              ++ LNL  N + +  EL K++ L KL  L L  NP     +D+++Y        P L
Sbjct: 244 MKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPC----TDETSYRQEALVQMPYL 299

Query: 354 LRLD 357
            RLD
Sbjct: 300 ERLD 303



 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
           P L   +   N++   +G+S      P+++TLNL  N +     L   K + L  + L G
Sbjct: 134 PYLQIASFAYNQITDTEGISH-----PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRG 188

Query: 330 NPLCST 335
           N L ST
Sbjct: 189 NQLEST 194


>gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens]
          Length = 236

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
           ++N E +     P ++ +A S  V  L S  E      +EQ E ++A  A S   + EW 
Sbjct: 78  VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136

Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
           +K +++ E  Y R  +     +   ++  EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168


>gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens]
          Length = 248

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
           ++N E +     P ++ +A S  V  L S  E      +EQ E ++A  A S   + EW 
Sbjct: 78  VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136

Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
           +K +++ E  Y R  +     +   ++  EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168


>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
          Length = 583

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLES 310
           P+L SLNL  N+L +L   +D+   AP++++LNL+ N L+S
Sbjct: 129 PQLQSLNLSGNRLRELP--ADLARCAPRLQSLNLTGNCLDS 167


>gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]
          Length = 218

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
           ++N E +     P ++ +A S  V  L S  E      +EQ E ++A  A S   + EW 
Sbjct: 78  VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136

Query: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
           +K +++ E  Y R  +     +   +   EAF
Sbjct: 137 EKAIKELEEWYARQDEQLQKTKANNRAAEEAF 168


>gi|11321571 slit homolog 3 [Homo sapiens]
          Length = 1523

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 256 NCMAATLKIIERNFPELLS-LNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWEL 314
           +C    L  I  + PE ++ L L +N++  L+  + I +K P ++ +NLS NK++   E 
Sbjct: 517 DCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEA-TGIFKKLPNLRKINLSNNKIKEVREG 575

Query: 315 GKVKGLKLEELWLEGNPL 332
                  ++EL L GN L
Sbjct: 576 AFDGAASVQELMLTGNQL 593



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 249 DIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQL-DGLSDITEKAPKVKTLNLSKNK 307
           D+ LN           I +  P L  +NL NNK+ ++ +G  D    A  V+ L L+ N+
Sbjct: 536 DLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFD---GAASVQELMLTGNQ 592

Query: 308 LESAWELGKV-KGLK-LEELWLEGNPLCSTFSDQSAYVSAIR 347
           LE+    G+V +GL  L+ L L  N +    +D  A +S++R
Sbjct: 593 LETVH--GRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVR 632


>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
           sapiens]
          Length = 660

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 288 LSDITEKAPK-VKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAI 346
           L +     PK V+ L+L +N +++       + LKLEEL L+ N + +   +  A+  AI
Sbjct: 100 LDEFPMNLPKNVRVLHLQENNIQTISRAALAQLLKLEELHLDDNSISTVGVEDGAFREAI 159

Query: 347 RDCFPKLLRLDGRELSA-PVIVDIDSSE 373
                KLL L    LS+ PV + +D  E
Sbjct: 160 S---LKLLFLSKNHLSSVPVGLPVDLQE 184


>gi|4826876 osteomodulin [Homo sapiens]
          Length = 421

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 12/174 (6%)

Query: 226 NVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQL 285
           N+ Q  L+  NL   P  + + ++ +L   N ++            L  L+LC N L+  
Sbjct: 142 NLLQLHLEHNNLEEFPFPLPKSLERLLLGYNEISKLQTNAMDGLVNLTMLDLCYNYLHDS 201

Query: 286 DGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL--KLEELWLEGNPLCS---TFSDQS 340
                I  K  K+  LNL  N+LES        GL   L  L LE N + S    + D+ 
Sbjct: 202 LLKDKIFAKMEKLMQLNLCSNRLES-----MPPGLPSSLMYLSLENNSISSIPEKYFDKL 256

Query: 341 AYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQ 394
             +  +R    KL  +     + P IV++  S      K+ F     L+HL LQ
Sbjct: 257 PKLHTLRMSHNKLQDIPYNIFNLPNIVEL--SVGHNKLKQAFYIPRNLEHLYLQ 308


>gi|82546845 breakpoint cluster region isoform 2 [Homo sapiens]
          Length = 1227

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 199  STAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRR--N 256
            S  PY V+  ++  ++E   +     Y VS  A D+Q L+   D+  +D+ ++++    N
Sbjct: 1021 SKVPYIVRQCVE--EIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVN 1078

Query: 257  CMAATLKIIERNFPELL 273
             +A TLK+  R  PE L
Sbjct: 1079 AIAGTLKLYFRELPEPL 1095


>gi|82546843 breakpoint cluster region isoform 1 [Homo sapiens]
          Length = 1271

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 199  STAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRR--N 256
            S  PY V+  ++  ++E   +     Y VS  A D+Q L+   D+  +D+ ++++    N
Sbjct: 1065 SKVPYIVRQCVE--EIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVN 1122

Query: 257  CMAATLKIIERNFPELL 273
             +A TLK+  R  PE L
Sbjct: 1123 AIAGTLKLYFRELPEPL 1139


>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
          Length = 1250

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 396 LQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFD-------PKDSAPSSLCKYFEDSRNMK 448
           LQ+ +S++D   +  LLG        +  + ++        KD+ P      F+ S N+ 
Sbjct: 264 LQELWSLFDFACQGSLLGTLK-----TFKMEYENPITRAREKDATPGEKALGFKISENLM 318

Query: 449 TLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQ 491
            +  PY     LRRTK D+    S+ P+ + +  +  VD  C+
Sbjct: 319 AIIKPYF----LRRTKEDVQKKKSSNPEARLNEKNPDVDAICE 357


>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
          Length = 190

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 297 KVKTLNLSKNKLESAWELGKVKGLK-LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 355
           K+K L +S N ++   E  K+  L  LE+L   GNPL    S ++ ++       PKL +
Sbjct: 116 KLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKK 175

Query: 356 LDG 358
           LDG
Sbjct: 176 LDG 178


>gi|66472382 nischarin [Homo sapiens]
          Length = 1504

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 272 LLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGL 320
           L+ L+L  NKL  L+GL     K   +KTLNL+ N LES   L K+  L
Sbjct: 334 LVHLDLSYNKLSSLEGLHT---KLGNIKTLNLAGNLLESLSGLHKLYSL 379


>gi|4503743 flightless I homolog [Homo sapiens]
          Length = 1269

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 270 PELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEG 329
           P L  LNL +N   Q+  LS   ++   V+TLNLS+N+L S       K  KL++L+L  
Sbjct: 246 PSLRRLNLSSN---QITELSLCIDQWVHVETLNLSRNQLTSL-PSAICKLSKLKKLYLNS 301

Query: 330 NPL 332
           N L
Sbjct: 302 NKL 304


>gi|5901992 keratocan [Homo sapiens]
          Length = 352

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 53/200 (26%), Positives = 74/200 (37%), Gaps = 49/200 (24%)

Query: 211 PGQMEMLKLTMNKRYNVSQQA---------LDLQNLRFDPDLMGRDIDIILNRRNCMAAT 261
           P  +E L+L  NK   + Q           LDLQN +   +   RD       +N M   
Sbjct: 141 PRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQNNKLVDNAFQRDT--FKGLKNLMQLN 198

Query: 262 L-KIIERNFPELLSLN-----LCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE------ 309
           + K   RN P  L  N     L NN +  +    +     PKV  L L+ NKL       
Sbjct: 199 MAKNALRNMPPRLPANTMQLFLDNNSIEGIP--ENYFNVIPKVAFLRLNHNKLSDEGLPS 256

Query: 310 -------------SAWELGKVKGLK--LEELWLEGNPL----CSTFSDQSAYVSAIRDCF 350
                        S  +L KV  +   L+ L L+ N +     S      + + A RD F
Sbjct: 257 RGFDVSSILDLQLSHNQLTKVPRISAHLQHLHLDHNKIKSVNVSVICPSPSMLPAERDSF 316

Query: 351 P-----KLLRLDGRELSAPV 365
                 + LRLDG E+  P+
Sbjct: 317 SYGPHLRYLRLDGNEIKPPI 336


>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
           member E isoform 1 [Homo sapiens]
          Length = 268

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 20/93 (21%)

Query: 249 DIILNRRNCMAATLKIIERNFPELLSLNLCN------------NKLYQLD--------GL 288
           +++L+   C+   ++ +   F EL  L++ N            NKL +L+        GL
Sbjct: 21  ELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGL 80

Query: 289 SDITEKAPKVKTLNLSKNKLESAWELGKVKGLK 321
             + EK P +  LNLS NK++    +  ++ LK
Sbjct: 81  EVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLK 113


>gi|90991702 leucine-rich repeat kinase 1 [Homo sapiens]
          Length = 2015

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 256 NCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITE-KAPKVKTLNLSKNKLESAWEL 314
           NC+A    +I      L  LNL +N L +L G+    E    ++  +++S NKL S    
Sbjct: 288 NCLATLPSVIPWGLINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKL-SHLPP 346

Query: 315 GKVKGLKLEELWLEGNPLCSTFSDQSA 341
           G +   KL++L    N L   F +++A
Sbjct: 347 GFLHLSKLQKLTASKNCLEKLFEEENA 373


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,322,066
Number of Sequences: 37866
Number of extensions: 1087612
Number of successful extensions: 2764
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2713
Number of HSP's gapped (non-prelim): 79
length of query: 626
length of database: 18,247,518
effective HSP length: 108
effective length of query: 518
effective length of database: 14,157,990
effective search space: 7333838820
effective search space used: 7333838820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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