Guide to the Human Genome
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Name: NTRK1 Sequence: fasta or formatted (760aa) NCBI GI: 56118210
Description:

neurotrophic tyrosine kinase, receptor, type 1 isoform 3

Referenced in:

Receptor Tyrosine Kinases

Other entries for this name:
alt prot [796aa] neurotrophic tyrosine kinase, receptor, type 1 isoform 2
alt prot [790aa] neurotrophic tyrosine kinase, receptor, type 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         60           2
 C cysteine            2.5         19           1
 D aspartate           3.9         30           2
 E glutamate           6.2         47           3
 F phenylalanine       4.2         32           2
 G glycine             8.0         61           2
 H histidine           3.2         24           2
 I isoleucine          3.2         24           2
 K lysine              3.2         24           2
 L leucine            12.6         96           3
 M methionine          2.4         18           1
 N asparagine          4.2         32           2
 P proline             5.8         44           2
 Q glutamine           4.9         37           2
 R arginine            5.8         44           2
 S serine              6.3         48           2
 T threonine           4.5         34           2
 V valine              7.8         59           2
 W tryptophan          1.8         14           1
 Y tyrosine            1.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophic tyrosine kinase, receptor, type 1 isofo... 
NTRK1                 0.948   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.944   neurotrophic tyrosine kinase, receptor, type 1 isofor...
NTRK3                 0.470   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.463   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK2                 0.447   neurotrophic tyrosine kinase, receptor, type 2 isofo...
NTRK2                 0.441   neurotrophic tyrosine kinase, receptor, type 2 isofo...
MUSK                  0.170   skeletal muscle receptor tyrosine kinase 
NTRK3                 0.163   neurotrophic tyrosine kinase, receptor, type 3 isofo...
ROR1                  0.148   receptor tyrosine kinase-like orphan receptor 1 iso...
NTRK2                 0.144   neurotrophic tyrosine kinase, receptor, type 2 isofo...
IGF1R                 0.144   insulin-like growth factor 1 receptor precursor [Homo...
DDR2                  0.144   discoidin domain receptor family, member 2 precursor...
DDR2                  0.144   discoidin domain receptor family, member 2 precursor...
ROR2                  0.140   receptor tyrosine kinase-like orphan receptor 2 prec...
DDR1                  0.140   discoidin domain receptor family, member 1 isoform b...
DDR1                  0.140   discoidin domain receptor family, member 1 isoform a...
INSRR                 0.139   insulin receptor-related receptor precursor 
INSR                  0.139   insulin receptor isoform Short precursor 
INSR                  0.139   insulin receptor isoform Long precursor 
NTRK2                 0.138   neurotrophic tyrosine kinase, receptor, type 2 isofo...
DDR1                  0.135   discoidin domain receptor family, member 1 isoform c...
ALK                   0.134   anaplastic lymphoma kinase 
PTK7                  0.132   PTK7 protein tyrosine kinase 7 isoform b precursor [...
PTK7                  0.132   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.132   PTK7 protein tyrosine kinase 7 isoform c precursor [...
LTK                   0.130   leukocyte receptor tyrosine kinase isoform 1 precurs...
LTK                   0.130   leukocyte receptor tyrosine kinase isoform 2 precurs...
FGFR4                 0.130   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.130   fibroblast growth factor receptor 4 isoform 1 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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