Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPATA22 Sequence: fasta or formatted (363aa) NCBI GI: 14211933
Description:

spermatogenesis associated 22

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           1
 C cysteine            1.9          7           1
 D aspartate           5.2         19           2
 E glutamate           4.7         17           1
 F phenylalanine       3.3         12           1
 G glycine             4.1         15           2
 H histidine           1.1          4           1
 I isoleucine          3.9         14           2
 K lysine              8.0         29           2
 L leucine             8.3         30           2
 M methionine          2.2          8           1
 N asparagine          7.2         26           1
 P proline             6.6         24           2
 Q glutamine           6.9         25           3
 R arginine            6.1         22           1
 S serine              9.6         35           2
 T threonine           6.1         22           1
 V valine              5.8         21           1
 W tryptophan          1.4          5           1
 Y tyrosine            3.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 22 
NAV2                  0.017   neuron navigator 2 isoform 4 
NAV2                  0.017   neuron navigator 2 isoform 3 
NAV2                  0.017   neuron navigator 2 isoform 2 
CBLB                  0.013   Cas-Br-M (murine) ecotropic retroviral transforming ...
RPGRIP1L              0.011   RPGRIP1-like isoform b 
RPGRIP1L              0.011   RPGRIP1-like isoform a 
LOC647055             0.010   PREDICTED: similar to hCG1790759 
LOC647055             0.010   PREDICTED: similar to hCG1790759 
LOC647055             0.010   PREDICTED: similar to hCG1790759 
RSF1                  0.008   remodeling and spacing factor 1 
VCL                   0.007   vinculin isoform VCL 
VCL                   0.007   vinculin isoform meta-VCL 
SEZ6L                 0.007   seizure related 6 homolog (mouse)-like precursor [Ho...
C14orf49              0.007   nesprin-3 
PRRT3                 0.007   proline-rich transmembrane protein 3 
ZNF592                0.007   zinc finger protein 592 
PLEKHM2               0.007   pleckstrin homology domain containing, family M (wi...
BLM                   0.006   Bloom syndrome protein 
UBXN7                 0.006   UBX domain containing 7 
NEUROD4               0.006   neurogenic differentiation 4 
KIF3B                 0.004   kinesin family member 3B 
STAG3                 0.004   stromal antigen 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press