Guide to the Human Genome
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Name: VKORC1L1 Sequence: fasta or formatted (176aa) NCBI GI: 46309463
Description:

vitamin K epoxide reductase complex, subunit 1-like 1

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         17           2
 C cysteine            2.8          5           1
 D aspartate           2.3          4           1
 E glutamate           4.0          7           1
 F phenylalanine       4.0          7           1
 G glycine             6.2         11           1
 H histidine           1.1          2           1
 I isoleucine          7.4         13           2
 K lysine              4.0          7           1
 L leucine            15.9         28           3
 M methionine          2.3          4           1
 N asparagine          2.8          5           1
 P proline             3.4          6           1
 Q glutamine           2.8          5           1
 R arginine            6.2         11           1
 S serine              6.2         11           2
 T threonine           1.7          3           1
 V valine              9.1         16           2
 W tryptophan          2.3          4           1
 Y tyrosine            5.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vitamin K epoxide reductase complex, subunit 1-like ... 
VKORC1                0.419   vitamin K epoxide reductase complex, subunit 1 isofo...
VKORC1                0.089   vitamin K epoxide reductase complex, subunit 1 isofo...
SSPN                  0.015   sarcospan isoform 1 
C9orf71               0.012   hypothetical protein LOC169693 
HTR4                  0.012   serotonin 5-HT4 receptor isoform n 
HTR4                  0.012   serotonin 5-HT4 receptor isoform i 
HTR4                  0.012   serotonin 5-HT4 receptor isoform hb 
HTR4                  0.012   serotonin 5-HT4 receptor isoform d 
HTR4                  0.012   serotonin 5-HT4 receptor isoform a 
HTR4                  0.012   serotonin 5-HT4 receptor isoform g 
HTR4                  0.012   serotonin 5-HT4 receptor isoform b 
LOC100131199          0.012   PREDICTED: hypothetical protein 
SLC30A2               0.012   solute carrier family 30, member 2 isoform 2 
SLC30A2               0.012   solute carrier family 30, member 2 isoform 1 
ABCA5                 0.009   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.009   ATP-binding cassette, sub-family A , member 5 
TMEM42                0.006   transmembrane protein 42 
SLC7A2                0.006   solute carrier family 7, member 2 isoform 2 
TKTL2                 0.006   transketolase-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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