Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC29A1 Sequence: fasta or formatted (456aa) NCBI GI: 4826716
Description:

equilibrative nucleoside transporter 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [456aa] equilibrative nucleoside transporter 1
alt mRNA [456aa] equilibrative nucleoside transporter 1
alt mRNA [456aa] equilibrative nucleoside transporter 1
alt mRNA [456aa] equilibrative nucleoside transporter 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         46           2
 C cysteine            2.2         10           1
 D aspartate           1.8          8           1
 E glutamate           3.9         18           2
 F phenylalanine       8.8         40           2
 G glycine             5.9         27           1
 H histidine           0.9          4           1
 I isoleucine          7.5         34           2
 K lysine              3.5         16           2
 L leucine            13.6         62           4
 M methionine          3.1         14           1
 N asparagine          3.1         14           2
 P proline             4.8         22           1
 Q glutamine           3.1         14           2
 R arginine            3.3         15           2
 S serine              8.6         39           2
 T threonine           5.3         24           2
 V valine              6.6         30           2
 W tryptophan          1.5          7           1
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   equilibrative nucleoside transporter 1 
SLC29A1               1.000   equilibrative nucleoside transporter 1 
SLC29A1               1.000   equilibrative nucleoside transporter 1 
SLC29A1               1.000   equilibrative nucleoside transporter 1 
SLC29A1               1.000   equilibrative nucleoside transporter 1 
SLC29A2               0.430   solute carrier family 29 (nucleoside transporters), ...
SLC29A3               0.267   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.097   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.097   solute carrier family 29 (nucleoside transporters),...
LOC100132308          0.044   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100132308          0.044   PREDICTED: similar to solute carrier family 29 (nuc...
LOC402509             0.042   PREDICTED: similar to solute carrier family 29 (nuc...
LOC402509             0.042   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100293842          0.013   PREDICTED: similar to SLC29A4 protein 
LOC100290340          0.013   PREDICTED: hypothetical protein XP_002347643 
LOC402269             0.013   PREDICTED: similar to SLC29A4 protein 
LOC100287294          0.013   PREDICTED: hypothetical protein XP_002342767 
LOC402269             0.013   PREDICTED: similar to SLC29A4 protein 
LOC728500             0.013   PREDICTED: similar to SLC29A4 protein 
OR2M4                 0.008   olfactory receptor, family 2, subfamily M, member 4 ...
TMEM184B              0.007   transmembrane protein 184B 
KCNT2                 0.007   potassium channel, subfamily T, member 2 
BMP3                  0.006   bone morphogenetic protein 3 preproprotein 
SLC46A1               0.006   proton-coupled folate transporter 
SLC5A5                0.006   solute carrier family 5 (sodium iodide symporter), me...
TOP2B                 0.006   DNA topoisomerase II, beta isozyme 
SLC10A1               0.005   solute carrier family 10, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press