Guide to the Human Genome
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Name: SLC17A5 Sequence: fasta or formatted (495aa) NCBI GI: 6912666
Description:

sialin

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         43           3
 C cysteine            1.6          8           2
 D aspartate           2.8         14           1
 E glutamate           3.0         15           2
 F phenylalanine       6.3         31           2
 G glycine             8.5         42           2
 H histidine           2.4         12           2
 I isoleucine          7.7         38           2
 K lysine              3.2         16           2
 L leucine            11.7         58           2
 M methionine          2.0         10           1
 N asparagine          3.8         19           1
 P proline             5.1         25           2
 Q glutamine           2.4         12           1
 R arginine            3.4         17           2
 S serine              7.7         38           2
 T threonine           6.3         31           2
 V valine              6.3         31           2
 W tryptophan          3.0         15           1
 Y tyrosine            4.0         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialin 
SLC17A6               0.347   solute carrier family 17 (sodium-dependent inorganic ...
SLC17A8               0.344   solute carrier family 17 (sodium-dependent inorganic...
SLC17A7               0.337   solute carrier family 17, member 7 
SLC17A4               0.316   solute carrier family 17 (sodium phosphate), member 4...
SLC17A3               0.289   solute carrier family 17 (sodium phosphate), member...
SLC17A1               0.283   solute carrier family 17 (sodium phosphate), member...
SLC17A8               0.279   solute carrier family 17 (sodium-dependent inorgani...
SLC17A2               0.242   solute carrier family 17 (sodium phosphate), member 2...
SLC17A3               0.205   solute carrier family 17 (sodium phosphate), member...
SLC17A9               0.149   vesicular nucleotide transporter SLC17A9 
SLC37A2               0.029   solute carrier family 37 (glycerol-3-phosphate tran...
SLC37A2               0.029   solute carrier family 37 (glycerol-3-phosphate trans...
SLC37A1               0.029   solute carrier family 37 member 1 
SLC18A2               0.016   solute carrier family 18 (vesicular monoamine), memb...
SLC18A1               0.016   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.016   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.016   solute carrier family 18 (vesicular monoamine), membe...
SLC37A4               0.015   solute carrier family 37 (glucose-6-phosphate transpo...
SLC18A1               0.014   solute carrier family 18 (vesicular monoamine), mem...
SVOP                  0.012   SV2 related protein 
SLC18A3               0.010   vesicular acetylcholine transporter 
SLC2A10               0.010   solute carrier family 2 member 10 
SLC22A3               0.010   solute carrier family 22 member 3 
SLC15A4               0.009   solute carrier family 15, member 4 
SPNS1                 0.009   spinster homolog 1 isoform 3 
SPNS1                 0.009   spinster homolog 1 isoform 2 
SPNS1                 0.009   spinster homolog 1 isoform 1 
SPNS1                 0.009   spinster homolog 1 isoform 1 
AQP8                  0.009   aquaporin 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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