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Search of human proteins with 95102483
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|95102483 activating transcription factor 3 isoform 2 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|95102483 activating transcription factor 3 isoform 2 [Homo sa... 275 6e-75
gi|4502263 activating transcription factor 3 isoform 1 [Homo sap... 231 1e-61
gi|71902536 activating transcription factor 3 isoform 1 [Homo sa... 231 1e-61
gi|205277421 Jun dimerization protein 2 isoform b [Homo sapiens] 61 3e-10
gi|205277419 Jun dimerization protein 2 isoform a [Homo sapiens] 61 3e-10
gi|205277417 Jun dimerization protein 2 isoform a [Homo sapiens] 61 3e-10
gi|18497306 Jun dimerization protein 2 isoform a [Homo sapiens] 61 3e-10
gi|4885243 FOS-like antigen 1 [Homo sapiens] 55 1e-08
gi|4885245 FOS-like antigen 2 [Homo sapiens] 53 7e-08
gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog ... 52 1e-07
gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B is... 51 3e-07
gi|16418355 cAMP responsive element binding protein 3-like 1 [Ho... 43 7e-05
gi|8924246 basic leucine zipper transcription factor, ATF-like 3... 40 4e-04
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|102469037 jun D proto-oncogene [Homo sapiens] 35 0.014
gi|194239643 activating transcription factor 7 isoform 3 [Homo s... 35 0.018
gi|5802980 activating transcription factor 7 isoform 2 [Homo sap... 35 0.018
gi|194239640 activating transcription factor 7 isoform 1 [Homo s... 35 0.018
gi|12758125 ribosomal RNA processing 8, methyltransferase, homol... 35 0.018
gi|4758616 jun oncogene [Homo sapiens] 34 0.031
gi|22538422 activating transcription factor 2 [Homo sapiens] 34 0.031
gi|34335200 cAMP responsive element modulator isoform j [Homo sa... 34 0.041
gi|34335198 cAMP responsive element modulator isoform i [Homo sa... 34 0.041
gi|34335196 cAMP responsive element modulator isoform h [Homo sa... 34 0.041
gi|34335194 cAMP responsive element modulator isoform g [Homo sa... 34 0.041
gi|34335188 cAMP responsive element modulator isoform d [Homo sa... 34 0.041
gi|34335220 cAMP responsive element modulator isoform r [Homo sa... 34 0.041
gi|34335226 cAMP responsive element modulator isoform s [Homo sa... 34 0.041
gi|34335224 cAMP responsive element modulator isoform t [Homo sa... 34 0.041
gi|34335222 cAMP responsive element modulator isoform u [Homo sa... 34 0.041
>gi|95102483 activating transcription factor 3 isoform 2 [Homo
sapiens]
Length = 135
Score = 275 bits (704), Expect = 6e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
Sbjct: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
Query: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP 120
ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP
Sbjct: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP 120
Query: 121 FWVQKTCIWAVDSCK 135
FWVQKTCIWAVDSCK
Sbjct: 121 FWVQKTCIWAVDSCK 135
>gi|4502263 activating transcription factor 3 isoform 1 [Homo
sapiens]
Length = 181
Score = 231 bits (589), Expect = 1e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
Sbjct: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
Query: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK
Sbjct: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
>gi|71902536 activating transcription factor 3 isoform 1 [Homo
sapiens]
Length = 181
Score = 231 bits (589), Expect = 1e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
Sbjct: 1 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS 60
Query: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK
Sbjct: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
>gi|205277421 Jun dimerization protein 2 isoform b [Homo sapiens]
Length = 174
Score = 60.8 bits (146), Expect = 3e-10
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 6 PGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMSSALES 64
PGQ+ V+ ++ P L P L + EEL++A I+N LE
Sbjct: 14 PGQIPDPSVTTGSL-PGLGPLTGLPS------SALTVEELKYADIRNLGAMIAPLHFLE- 65
Query: 65 VTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + RP V K+E+ EE+ER+KRRRE+NK+AAA+CRNKKKE+TE LQ+
Sbjct: 66 VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQR 113
>gi|205277419 Jun dimerization protein 2 isoform a [Homo sapiens]
Length = 163
Score = 60.8 bits (146), Expect = 3e-10
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 6 PGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMSSALES 64
PGQ+ V+ ++ P L P L + EEL++A I+N LE
Sbjct: 3 PGQIPDPSVTTGSL-PGLGPLTGLPS------SALTVEELKYADIRNLGAMIAPLHFLE- 54
Query: 65 VTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + RP V K+E+ EE+ER+KRRRE+NK+AAA+CRNKKKE+TE LQ+
Sbjct: 55 VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQR 102
>gi|205277417 Jun dimerization protein 2 isoform a [Homo sapiens]
Length = 163
Score = 60.8 bits (146), Expect = 3e-10
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 6 PGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMSSALES 64
PGQ+ V+ ++ P L P L + EEL++A I+N LE
Sbjct: 3 PGQIPDPSVTTGSL-PGLGPLTGLPS------SALTVEELKYADIRNLGAMIAPLHFLE- 54
Query: 65 VTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + RP V K+E+ EE+ER+KRRRE+NK+AAA+CRNKKKE+TE LQ+
Sbjct: 55 VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQR 102
>gi|18497306 Jun dimerization protein 2 isoform a [Homo sapiens]
Length = 163
Score = 60.8 bits (146), Expect = 3e-10
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 6 PGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMSSALES 64
PGQ+ V+ ++ P L P L + EEL++A I+N LE
Sbjct: 3 PGQIPDPSVTTGSL-PGLGPLTGLPS------SALTVEELKYADIRNLGAMIAPLHFLE- 54
Query: 65 VTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + RP V K+E+ EE+ER+KRRRE+NK+AAA+CRNKKKE+TE LQ+
Sbjct: 55 VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQR 102
>gi|4885243 FOS-like antigen 1 [Homo sapiens]
Length = 271
Score = 55.5 bits (132), Expect = 1e-08
Identities = 23/36 (63%), Positives = 33/36 (91%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
+++PEE+ER++ RRERNK+AAAKCRN++KE T+ LQ
Sbjct: 99 QISPEEEERRRVRRERNKLAAAKCRNRRKELTDFLQ 134
>gi|4885245 FOS-like antigen 2 [Homo sapiens]
Length = 326
Score = 53.1 bits (126), Expect = 7e-08
Identities = 22/36 (61%), Positives = 33/36 (91%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
+++PEE+E+++ RRERNK+AAAKCRN+++E TE LQ
Sbjct: 118 QLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQ 153
>gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog
[Homo sapiens]
Length = 380
Score = 52.4 bits (124), Expect = 1e-07
Identities = 21/36 (58%), Positives = 33/36 (91%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
+++PEE+E+++ RRERNK+AAAKCRN+++E T+ LQ
Sbjct: 131 QLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQ 166
>gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B
isoform 1 [Homo sapiens]
Length = 338
Score = 50.8 bits (120), Expect = 3e-07
Identities = 21/35 (60%), Positives = 31/35 (88%)
Query: 81 VAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
+ PEE+E+++ RRERNK+AAAKCRN+++E T+ LQ
Sbjct: 150 LTPEEEEKRRVRRERNKLAAAKCRNRRRELTDRLQ 184
>gi|16418355 cAMP responsive element binding protein 3-like 1 [Homo
sapiens]
Length = 519
Score = 43.1 bits (100), Expect = 7e-05
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 71 PLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRPFWVQKTCIW 129
P + +TKAE E+ ++ RR+ +NKI+A + R KKKE ECL+K F + +W
Sbjct: 278 PTKLPLTKAE---EKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELW 333
>gi|8924246 basic leucine zipper transcription factor, ATF-like 3
[Homo sapiens]
Length = 127
Score = 40.4 bits (93), Expect = 4e-04
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 82 APEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
+PE+D+RK RRRE+N++AA + R K+ +K + L +
Sbjct: 31 SPEDDDRKVRRREKNRVAAQRSRKKQTQKADKLHE 65
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 36.6 bits (83), Expect = 0.006
Identities = 23/44 (52%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 70 RPLGVSITKAEVAPEEDERKKRRRER-NKIAAAKCRNKKKEKTE 112
R G K E EE ERKKRRRE+ NK K + KKKEK E
Sbjct: 79 RERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKE 122
Score = 28.9 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 67 VSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEK 110
+ +R + K E ERKK RRER K + + +K+E+
Sbjct: 38 IREREREIETRKEGKKERESERKKERREREKRKREREKERKRER 81
Score = 27.3 bits (59), Expect = 3.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 VSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTE 112
+ R G ++E E ER+KR+RER K + R KK++K E
Sbjct: 45 IETRKEGKKERESERKKERREREKRKREREK-ERKRERGKKEKKGE 89
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 87 ERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRPFWVQK 125
ERKK R + + K R KK+E+ + QK + W +K
Sbjct: 195 ERKKERERKERRERKKERKKKEERKKERQKDRQTNWREK 233
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 78 KAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTE 112
K E E + +++++RER ++ + K+KE+ E
Sbjct: 151 KEEREKERERKERKKRERKQVGEKEEERKEKERKE 185
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 35.4 bits (80), Expect = 0.014
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 63 ESVTVSDRP-LGVSITKAEVAPEEDERKK--RRRERNKIAAAKCRNKKKEKTECLQKLPR 119
E TV D P G S + + + ER K R+R RN+IAA+KCR +K E+ L++ +
Sbjct: 242 EPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIAASKCRKRKLERISRLEEKVK 301
Query: 120 PFWVQKT 126
Q T
Sbjct: 302 TLKSQNT 308
>gi|194239643 activating transcription factor 7 isoform 3 [Homo
sapiens]
Length = 462
Score = 35.0 bits (79), Expect = 0.018
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 81 VAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + DER++R ERN+ AA++CR K+K L+K
Sbjct: 306 VDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEK 341
>gi|5802980 activating transcription factor 7 isoform 2 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.018
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 81 VAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + DER++R ERN+ AA++CR K+K L+K
Sbjct: 327 VDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEK 362
>gi|194239640 activating transcription factor 7 isoform 1 [Homo
sapiens]
Length = 494
Score = 35.0 bits (79), Expect = 0.018
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 81 VAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQK 116
V + DER++R ERN+ AA++CR K+K L+K
Sbjct: 338 VDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEK 373
>gi|12758125 ribosomal RNA processing 8, methyltransferase, homolog
[Homo sapiens]
Length = 456
Score = 35.0 bits (79), Expect = 0.018
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 61 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLP 118
ALE+ ++S P + I+ +E EE+ERKK+ ++ A+A KK K +C ++ P
Sbjct: 46 ALEAASLSQHPPSLCISDSE--EEEEERKKKCPKKASFASASAEVGKKGKKKCQKQGP 101
>gi|4758616 jun oncogene [Homo sapiens]
Length = 331
Score = 34.3 bits (77), Expect = 0.031
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 63 ESVTVSDRPLGVSITKAEVAPEEDERKK--RRRERNKIAAAKCRNKKKEKTECLQK 116
E TV + P G + + + E ER K R+R RN+IAA+KCR +K E+ L++
Sbjct: 228 EPQTVPEMP-GETPPLSPIDMESQERIKAERKRMRNRIAASKCRKRKLERIARLEE 282
>gi|22538422 activating transcription factor 2 [Homo sapiens]
Length = 505
Score = 34.3 bits (77), Expect = 0.031
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 82 APEEDERKKRRR--ERNKIAAAKCRNKKKEKTECLQK 116
A ED +KRR+ ERN+ AA++CR K+K + L+K
Sbjct: 346 AANEDPDEKRRKFLERNRAAASRCRQKRKVWVQSLEK 382
>gi|34335200 cAMP responsive element modulator isoform j [Homo
sapiens]
Length = 102
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 38 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 73
>gi|34335198 cAMP responsive element modulator isoform i [Homo
sapiens]
Length = 95
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 31 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 66
>gi|34335196 cAMP responsive element modulator isoform h [Homo
sapiens]
Length = 112
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 48 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 83
>gi|34335194 cAMP responsive element modulator isoform g [Homo
sapiens]
Length = 108
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 44 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 79
>gi|34335188 cAMP responsive element modulator isoform d [Homo
sapiens]
Length = 120
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 56 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 91
>gi|34335220 cAMP responsive element modulator isoform r [Homo
sapiens]
Length = 95
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 31 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 66
>gi|34335226 cAMP responsive element modulator isoform s [Homo
sapiens]
Length = 248
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 184 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 219
>gi|34335224 cAMP responsive element modulator isoform t [Homo
sapiens]
Length = 236
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 172 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 207
>gi|34335222 cAMP responsive element modulator isoform u [Homo
sapiens]
Length = 299
Score = 33.9 bits (76), Expect = 0.041
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 80 EVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQ 115
++A E +++ R +N+ AA +CR KKKE +CL+
Sbjct: 235 QLAEEATRKRELRLMKNREAARECRRKKKEYVKCLE 270
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,674,135
Number of Sequences: 37866
Number of extensions: 220651
Number of successful extensions: 1802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 327
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.