Guide to the Human Genome
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Name: ATF3 Sequence: fasta or formatted (135aa) NCBI GI: 95102483
Description:

activating transcription factor 3 isoform 2

Referenced in:

CREB / ATF Family
Jun / Fos Complexes

Other entries for this name:
alt prot [181aa] activating transcription factor 3 isoform 1
alt prot [181aa] activating transcription factor 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         12           3
 C cysteine            4.4          6           1
 D aspartate           3.0          4           1
 E glutamate           8.9         12           2
 F phenylalanine       3.7          5           1
 G glycine             2.2          3           1
 H histidine           2.2          3           1
 I isoleucine          3.7          5           1
 K lysine             10.4         14           3
 L leucine             7.4         10           1
 M methionine          2.2          3           2
 N asparagine          3.0          4           1
 P proline             6.7          9           2
 Q glutamine           3.7          5           1
 R arginine            7.4         10           3
 S serine              8.9         12           2
 T threonine           3.7          5           1
 V valine              8.1         11           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 3 isoform 2 
ATF3                  0.824   activating transcription factor 3 isoform 1 
ATF3                  0.824   activating transcription factor 3 isoform 1 
JDP2                  0.144   Jun dimerization protein 2 isoform b 
JDP2                  0.144   Jun dimerization protein 2 isoform a 
JDP2                  0.144   Jun dimerization protein 2 isoform a 
JDP2                  0.144   Jun dimerization protein 2 isoform a 
FOSL1                 0.120   FOS-like antigen 1 
FOSL2                 0.112   FOS-like antigen 2 
FOS                   0.108   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
FOSB                  0.104   FBJ murine osteosarcoma viral oncogene homolog B is...
CREB3L1               0.072   cAMP responsive element binding protein 3-like 1 [Ho...
BATF3                 0.060   basic leucine zipper transcription factor, ATF-like 3...
LOC100133599          0.048   PREDICTED: hypothetical protein 
JUND                  0.040   jun D proto-oncogene 
ATF7                  0.040   activating transcription factor 7 isoform 3 
ATF7                  0.040   activating transcription factor 7 isoform 2 
ATF7                  0.040   activating transcription factor 7 isoform 1 
RRP8                  0.040   ribosomal RNA processing 8, methyltransferase, homol...
JUN                   0.036   jun oncogene 
ATF2                  0.036   activating transcription factor 2 
CREM                  0.036   cAMP responsive element modulator isoform j 
CREM                  0.036   cAMP responsive element modulator isoform i 
CREM                  0.036   cAMP responsive element modulator isoform h 
CREM                  0.036   cAMP responsive element modulator isoform g 
CREM                  0.036   cAMP responsive element modulator isoform d 
CREM                  0.036   cAMP responsive element modulator isoform r 
CREM                  0.036   cAMP responsive element modulator isoform s 
CREM                  0.036   cAMP responsive element modulator isoform t 
CREM                  0.036   cAMP responsive element modulator isoform u 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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