Guide to the Human Genome
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Name: KCTD5 Sequence: fasta or formatted (234aa) NCBI GI: 9506651
Description:

potassium channel tetramerisation domain containing 5

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         13           1
 C cysteine            3.0          7           1
 D aspartate           5.6         13           1
 E glutamate           8.1         19           3
 F phenylalanine       2.6          6           1
 G glycine             9.0         21           3
 H histidine           1.7          4           1
 I isoleucine          3.4          8           1
 K lysine              6.0         14           1
 L leucine            11.1         26           2
 M methionine          1.7          4           1
 N asparagine          3.4          8           1
 P proline             3.8          9           1
 Q glutamine           4.3         10           1
 R arginine            6.4         15           2
 S serine              7.7         18           2
 T threonine           5.1         12           2
 V valine              6.4         15           2
 W tryptophan          0.9          2           1
 Y tyrosine            4.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing 5... 
KCTD2                 0.681   potassium channel tetramerisation domain containing ...
KCTD17                0.617   potassium channel tetramerisation domain containing...
KCTD9                 0.159   potassium channel tetramerisation domain containing ...
LOC647013             0.144   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.144   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.144   PREDICTED: similar to potassium channel tetramerisa...
SHKBP1                0.108   SH3KBP1 binding protein 1 
KCTD3                 0.104   potassium channel tetramerisation domain containing ...
KCTD16                0.088   potassium channel tetramerisation domain containing ...
KCTD14                0.082   potassium channel tetramerisation domain containing...
KCTD4                 0.082   potassium channel tetramerisation domain containing...
TNFAIP1               0.077   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCTD6                 0.077   potassium channel tetramerisation domain containing...
KCTD6                 0.077   potassium channel tetramerisation domain containing...
KCTD12                0.075   potassium channel tetramerisation domain containing ...
KCTD10                0.073   potassium channel tetramerisation domain containing ...
KCTD8                 0.071   potassium channel tetramerisation domain containing ...
KCNG4                 0.069   potassium voltage-gated channel, subfamily G, member...
KCTD21                0.066   potassium channel tetramerisation domain containing ...
KCTD7                 0.064   potassium channel tetramerisation domain containing ...
KCTD13                0.060   potassium channel tetramerisation domain containing ...
KCTD18                0.053   potassium channel tetramerization domain containing ...
KCNS3                 0.051   potassium voltage-gated channel delayed-rectifier pr...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD1                 0.046   potassium channel tetramerisation domain containing...
KCTD1                 0.046   potassium channel tetramerisation domain containing...
KCTD1                 0.046   potassium channel tetramerisation domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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