Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC647013 Sequence: fasta or formatted (261aa) NCBI GI: 169180181
Description:

PREDICTED: similar to potassium channel tetramerisation domain containing 9

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [261aa] PREDICTED: similar to potassium channel tetramerisation domain co...
alt prot [261aa] PREDICTED: similar to potassium channel tetramerisation domain co...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         13           2
 C cysteine            3.1          8           2
 D aspartate           6.9         18           3
 E glutamate           5.4         14           2
 F phenylalanine       5.0         13           2
 G glycine             8.0         21           2
 H histidine           3.4          9           1
 I isoleucine          5.7         15           1
 K lysine              5.7         15           1
 L leucine            13.0         34           2
 M methionine          1.5          4           1
 N asparagine          6.1         16           1
 P proline             4.6         12           2
 Q glutamine           2.7          7           1
 R arginine            3.8         10           2
 S serine              5.7         15           2
 T threonine           5.0         13           3
 V valine              5.7         15           2
 W tryptophan          1.1          3           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to potassium channel tetramerisa... 
LOC647013             0.996   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.996   PREDICTED: similar to potassium channel tetramerisa...
KCTD9                 0.901   potassium channel tetramerisation domain containing ...
KCTD5                 0.126   potassium channel tetramerisation domain containing 5...
KCTD2                 0.118   potassium channel tetramerisation domain containing ...
KCTD17                0.099   potassium channel tetramerisation domain containing...
KCTD21                0.062   potassium channel tetramerisation domain containing ...
KCTD14                0.062   potassium channel tetramerisation domain containing...
KCTD7                 0.052   potassium channel tetramerisation domain containing ...
KCTD10                0.052   potassium channel tetramerisation domain containing ...
KCTD6                 0.052   potassium channel tetramerisation domain containing...
KCTD6                 0.052   potassium channel tetramerisation domain containing...
KCTD13                0.050   potassium channel tetramerisation domain containing ...
SHKBP1                0.048   SH3KBP1 binding protein 1 
KCTD3                 0.047   potassium channel tetramerisation domain containing ...
KCTD12                0.045   potassium channel tetramerisation domain containing ...
KCTD16                0.045   potassium channel tetramerisation domain containing ...
KCTD8                 0.043   potassium channel tetramerisation domain containing ...
KCTD4                 0.043   potassium channel tetramerisation domain containing...
KCTD18                0.041   potassium channel tetramerization domain containing ...
TNFAIP1               0.039   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCNRG                 0.039   potassium channel regulator isoform 2 
KCNRG                 0.039   potassium channel regulator isoform 1 
KCTD15                0.033   potassium channel tetramerisation domain containing...
KCTD15                0.033   potassium channel tetramerisation domain containing...
KCTD15                0.033   potassium channel tetramerisation domain containing...
KCTD1                 0.027   potassium channel tetramerisation domain containing...
KCTD1                 0.027   potassium channel tetramerisation domain containing...
KCTD1                 0.027   potassium channel tetramerisation domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press