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Search of human proteins with 9506557
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9506557 Down syndrome critical region protein 6 [Homo
sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9506557 Down syndrome critical region protein 6 [Homo sapiens] 409 e-115
gi|156523052 ripply1 homolog [Homo sapiens] 67 9e-12
gi|58000465 ripply2 protein [Homo sapiens] 65 3e-11
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 38 0.005
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 38 0.006
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 38 0.006
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 38 0.006
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 38 0.006
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens] 38 0.006
gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo ... 37 0.010
gi|29570782 additional sex combs like 1 [Homo sapiens] 37 0.013
gi|71043876 undifferentiated embryonic cell transcription factor... 36 0.017
gi|239751485 PREDICTED: hypothetical protein isoform 2 [Homo sap... 36 0.023
gi|239751483 PREDICTED: hypothetical protein isoform 1 [Homo sap... 36 0.023
gi|189571667 zinc finger protein 696 [Homo sapiens] 36 0.023
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 35 0.030
gi|188536004 zinc finger protein 469 [Homo sapiens] 35 0.039
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 35 0.039
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor... 35 0.051
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor... 35 0.051
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 35 0.051
gi|40254439 endothelial PAS domain protein 1 [Homo sapiens] 33 0.11
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 33 0.11
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 33 0.11
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 33 0.15
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 33 0.15
gi|55741677 SET domain containing 1A [Homo sapiens] 33 0.15
>gi|9506557 Down syndrome critical region protein 6 [Homo sapiens]
Length = 190
Score = 409 bits (1052), Expect = e-115
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP 60
MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
Sbjct: 1 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP 60
Query: 61 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA 120
RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
Sbjct: 61 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA 120
Query: 121 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS 180
SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
Sbjct: 121 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS 180
Query: 181 SRGGKCSSSK 190
SRGGKCSSSK
Sbjct: 181 SRGGKCSSSK 190
>gi|156523052 ripply1 homolog [Homo sapiens]
Length = 151
Score = 67.0 bits (162), Expect = 9e-12
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 39 WRPWIQTPGDAELTRTGRPLEPRADQHTFGS------KGAFGFQHPVRVYLPMSKRQEYL 92
WRPW+ + D+ R + D G+ K F HPVR++ P S+ +YL
Sbjct: 57 WRPWLSSTNDSP-----RQMRKLVDLAAGGATAAEVTKAESKFHHPVRLFWPKSRSFDYL 111
Query: 93 RSSGEQVLASFPVQATIDFYDDESTESASEAEEPEE 128
S+GE +L +FPVQATI+ Y+D +E E EE E+
Sbjct: 112 YSAGEILLQNFPVQATINLYEDSDSEEEEEDEEQED 147
>gi|58000465 ripply2 protein [Homo sapiens]
Length = 128
Score = 65.5 bits (158), Expect = 3e-11
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 39 WRPWIQTPGDAELTRTGRPLE--PRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSG 96
WRPW+ G E E P T S + F+HPVR++ P SK +YL
Sbjct: 37 WRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEA 96
Query: 97 EQVLASFPVQATIDFYDDESTESASE 122
E +L +FP+QATI FY+D +E E
Sbjct: 97 EALLKNFPIQATISFYEDSDSEDEIE 122
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 38.1 bits (87), Expect = 0.005
Identities = 45/159 (28%), Positives = 57/159 (35%), Gaps = 28/159 (17%)
Query: 3 PEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRA 62
PE G R +G D P P PE+PA P +P D T RPL P
Sbjct: 945 PELVLGTRDTGSKGV---ADDVVPPGPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLPPLC 1001
Query: 63 DQHTFGSKGAFGFQHPVRVYLPMSK---RQEYLRSSGEQVLASFPVQATIDFYDDESTES 119
T + A G P +P S R Y G V + P++ T
Sbjct: 1002 SLETIAEEPAPGPGPPPPAAVPTSSSQGRPPYPTGPGANVAS--PLEDT----------- 1048
Query: 120 ASEAEEPEEG-PPPLHLLPQEVGGRQENGPGGK--GRDQ 155
EEP + P P + + GG E PG + GR Q
Sbjct: 1049 ----EEPRDSRPRPCN--GEGAGGAYERAPGSQTDGRSQ 1081
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 37.7 bits (86), Expect = 0.006
Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 41/181 (22%)
Query: 20 PGDAPWRP---PPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQ 76
PG P +P PP P S + +P T + Q+T+G ++G Q
Sbjct: 176 PGSYPMQPVTAPPSYPPTSYSSTQP------------TSYDQSSYSQQNTYGQPSSYGQQ 223
Query: 77 HPVRVYLPMSKRQEYLRSSGEQVLASFPVQA-----TIDFYDDESTESASEAEEPEEGPP 131
S Q+ S G+Q S+P Q Y +S+ ++ ++ P
Sbjct: 224 S--------SYGQQ--SSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPS 273
Query: 132 PLHLLPQEVGG-------RQENGPGGKGRDQ-GINQGQRSSGGGDHWGEGPLPQGVSSRG 183
+ + QE GG R +GP +GR + G ++G S GG G G G RG
Sbjct: 274 SMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGR---GGGRGGMGAGERG 330
Query: 184 G 184
G
Sbjct: 331 G 331
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 37.7 bits (86), Expect = 0.006
Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 41/181 (22%)
Query: 20 PGDAPWRP---PPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQ 76
PG P +P PP P S + +P T + Q+T+G ++G Q
Sbjct: 182 PGSYPMQPVTAPPSYPPTSYSSTQP------------TSYDQSSYSQQNTYGQPSSYGQQ 229
Query: 77 HPVRVYLPMSKRQEYLRSSGEQVLASFPVQA-----TIDFYDDESTESASEAEEPEEGPP 131
S Q+ S G+Q S+P Q Y +S+ ++ ++ P
Sbjct: 230 S--------SYGQQ--SSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPS 279
Query: 132 PLHLLPQEVGG-------RQENGPGGKGRDQ-GINQGQRSSGGGDHWGEGPLPQGVSSRG 183
+ + QE GG R +GP +GR + G ++G S GG G G G RG
Sbjct: 280 SMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGR---GGGRGGMGAGERG 336
Query: 184 G 184
G
Sbjct: 337 G 337
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 27 PPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVRVYLPMS 86
P PP SP P P QTP RP+EP+ H K + P++ Y
Sbjct: 547 PEPPIPQASPGPPGPLSQTP------PMQRPVEPQEGPH----KSLVAHRVPLKPYAAPV 596
Query: 87 KRQEYLRSSGEQVLASFPVQATIDFYDDESTESAS--------EAEEPEEGPPPLHLLPQ 138
R + L+ + LA+FP D T + S ++ EGP P P
Sbjct: 597 PRSQSLQDQPTRNLAAFPASHDPDPAIPAPTATPSARGAVIRQNSDPTSEGPGPSPNPPA 656
Query: 139 EVGGRQENGPGGKGRDQGINQGQRSSGGG 167
V E P R I +SG G
Sbjct: 657 WVRPDNEAPPKVPQRTSSIATALNTSGAG 685
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 27 PPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVRVYLPMS 86
P PP SP P P QTP RP+EP+ H K + P++ Y
Sbjct: 547 PEPPIPQASPGPPGPLSQTP------PMQRPVEPQEGPH----KSLVAHRVPLKPYAAPV 596
Query: 87 KRQEYLRSSGEQVLASFPVQATIDFYDDESTESAS--------EAEEPEEGPPPLHLLPQ 138
R + L+ + LA+FP D T + S ++ EGP P P
Sbjct: 597 PRSQSLQDQPTRNLAAFPASHDPDPAIPAPTATPSARGAVIRQNSDPTSEGPGPSPNPPA 656
Query: 139 EVGGRQENGPGGKGRDQGINQGQRSSGGG 167
V E P R I +SG G
Sbjct: 657 WVRPDNEAPPKVPQRTSSIATALNTSGAG 685
>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
Length = 1295
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 27 PPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVRVYLPMS 86
P PP SP P P QTP RP+EP+ H K + P++ Y
Sbjct: 547 PEPPIPQASPGPPGPLSQTP------PMQRPVEPQEGPH----KSLVAHRVPLKPYAAPV 596
Query: 87 KRQEYLRSSGEQVLASFPVQATIDFYDDESTESAS--------EAEEPEEGPPPLHLLPQ 138
R + L+ + LA+FP D T + S ++ EGP P P
Sbjct: 597 PRSQSLQDQPTRNLAAFPASHDPDPAIPAPTATPSARGAVIRQNSDPTSEGPGPSPNPPA 656
Query: 139 EVGGRQENGPGGKGRDQGINQGQRSSGGG 167
V E P R I +SG G
Sbjct: 657 WVRPDNEAPPKVPQRTSSIATALNTSGAG 685
>gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo
sapiens]
Length = 201
Score = 37.0 bits (84), Expect = 0.010
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 16 GCHCPGDAPWRPPPP-RGP------ESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFG 68
G H P W PP GP + A W W PG+ R RP E A+Q G
Sbjct: 2 GTHRPQQVEWFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPG 61
Query: 69 SKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFP 104
+ P++ R++ L S+ L FP
Sbjct: 62 ENPS--------ARTPLNTREDSLPSASPPGLLHFP 89
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 36.6 bits (83), Expect = 0.013
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 141 GGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVSSRGGKCSS 188
GG G GG D+G +G S GG+ G P P+G S GKC+S
Sbjct: 643 GGGGPGGGGGGATDEGGGRGSSSGDGGEACGH-PEPRGGPSTPGKCTS 689
>gi|71043876 undifferentiated embryonic cell transcription factor
1 [Homo sapiens]
Length = 341
Score = 36.2 bits (82), Expect = 0.017
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 24 PWRPPP--PRGPESPAPWRPWIQTPGDAELTRTGRPLEPRA 62
P RPPP P P SPA P +TPGDA T RP P A
Sbjct: 5 PRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSA 45
>gi|239751485 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 122
Score = 35.8 bits (81), Expect = 0.023
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 2 EPEAAAGARKARGR---GCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPL 58
+P A G R AR G H P PPPP P APWR W Q P +PL
Sbjct: 53 DPRVAEGLRDARPAPEGGVHLTPQ-PEPPPPPPSPACAAPWR-WGQEP--------SQPL 102
Query: 59 EPRADQHTFGSKG 71
PR G +G
Sbjct: 103 SPRPYLGPRGCRG 115
>gi|239751483 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 122
Score = 35.8 bits (81), Expect = 0.023
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 2 EPEAAAGARKARGR---GCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPL 58
+P A G R AR G H P PPPP P APWR W Q P +PL
Sbjct: 53 DPRVAEGLRDARPAPEGGVHLTPQ-PEPPPPPPSPACAAPWR-WGQEP--------SQPL 102
Query: 59 EPRADQHTFGSKG 71
PR G +G
Sbjct: 103 SPRPYLGPRGCRG 115
>gi|189571667 zinc finger protein 696 [Homo sapiens]
Length = 374
Score = 35.8 bits (81), Expect = 0.023
Identities = 41/130 (31%), Positives = 49/130 (37%), Gaps = 28/130 (21%)
Query: 86 SKRQEYLRSSGEQVLASFPVQA-----TIDFYDDESTESASEAEEPE----EGPPPLHLL 136
+K L S V A+F QA + + +STE A+EA PE G PP L
Sbjct: 10 AKESSTLMESLAAVKAAFLAQAPSGSRSAEVQAAQSTEPAAEAGAPEGEGHRGGPPRALG 69
Query: 137 PQEVGGRQE--NGPGGKGR----------------DQGINQGQRSSGGGDHWGEGPLPQG 178
+ QE PGG R D N G + GGG W P P G
Sbjct: 70 SLGLCENQEARERPGGSPRGPVTSEKTGGQSGLESDVPPNAGPGAEGGGS-WKGRPFPCG 128
Query: 179 VSSRGGKCSS 188
R KCSS
Sbjct: 129 ACGRSFKCSS 138
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 35.4 bits (80), Expect = 0.030
Identities = 48/172 (27%), Positives = 64/172 (37%), Gaps = 40/172 (23%)
Query: 16 GCHCPGDAPWRPPP--PRGPESPAPWRPWIQTPGDAELTRTGRPLE-PRAD--------Q 64
G P A W PP R P +P P R G R+ RPL P + Q
Sbjct: 149 GTPSPDGAAWEPPARESRQPPTPPP-RTCFPLAG----LRSARPLTGPETEGRLRRPQQQ 203
Query: 65 HTFGSKGAFGFQHPVRVYLPMSKRQEYLRSS--GEQVLASFPVQATIDFYDDESTESASE 122
+ A G H ++ S+ Q R+S + AS+PV + +AS
Sbjct: 204 QERAQRPADGL-HSWHIF---SQPQAGARASCSSSSIAASYPVSRS---------RAASS 250
Query: 123 AEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP 174
+EE EEGPP ++ G Q P G + R GG WG P
Sbjct: 251 SEEEEEGPP-------QLPGAQ--SPAYHGGHSSGSDDDRDGEGGHRWGGRP 293
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 35.0 bits (79), Expect = 0.039
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 46/166 (27%)
Query: 6 AAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWR---PWIQTPGDAEL---TRTGRP-- 57
A+G R R G G+ P PP PR P + AP P + P A L TR+ R
Sbjct: 975 ASGLRPRRNDGL---GERP--PPRPRRPRTQAPGSRADPAPRVPRAAALPEETRSSRRRR 1029
Query: 58 LEPRADQHTFGSKG-AFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDES 116
L PR D ++G A+G + +++ ++ +EY DF
Sbjct: 1030 LPPRKDPRKRKARGGAWGKELILKIVQQKNRLREY------------------DF----- 1066
Query: 117 TESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQR 162
ASE+EE E+ P P+ G R G G K ++ + QG R
Sbjct: 1067 ---ASESEEDEQPP------PRGPGFRGRRGRGEKRKEVELTQGPR 1103
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 35.0 bits (79), Expect = 0.039
Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 21 GDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVR 80
G+ P PPPP P+ P P GD + P +P+ G++ P
Sbjct: 86 GNKPQGPPPPGKPQGPPP-------QGDKSRSPRSPPGKPQGPPPQGGNQ-------PQG 131
Query: 81 VYLPMSKRQEYLRSSGEQVLASFP---VQATIDFYDDESTESASEAEEPE---------- 127
P K Q G + P Q D++S S S +P+
Sbjct: 132 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQP 191
Query: 128 EGPPPLHLLPQ---EVGGRQENGPGGKGRDQG-------INQGQRSSGGGDHWGEGPLPQ 177
+GPPP PQ GG + GP G+ QG +Q RS G +GP PQ
Sbjct: 192 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP---QGPPPQ 248
Query: 178 G 178
G
Sbjct: 249 G 249
Score = 32.7 bits (73), Expect = 0.19
Identities = 47/180 (26%), Positives = 63/180 (35%), Gaps = 37/180 (20%)
Query: 21 GDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRT--GRPLEPRADQHTFGSKGAFGFQHP 78
G+ P PPPP P+ P P Q + +R+ G+P P G P
Sbjct: 147 GNKPQGPPPPGKPQGPPP-----QGDNKSRSSRSPPGKPQGPPPQ----------GGNQP 191
Query: 79 VRVYLPMSKRQEYLRSSGEQVLASFPV---QATIDFYDDESTESASEAEEPE-------- 127
P K Q G + P Q D++S + S +P+
Sbjct: 192 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGN 251
Query: 128 --EGPPPLHLLPQ---EVGGRQENGPGGKGRDQGI----NQGQRSSGGGDHWGEGPLPQG 178
+GPPP PQ GG + GP G+ QG RSS +GP PQG
Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311
Score = 28.5 bits (62), Expect = 3.6
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 116 STESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP- 174
S ++ +E EE P + PQ + N P G G QG GG G P
Sbjct: 15 SAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPP 74
Query: 175 --LPQGVSSRGG 184
PQG +GG
Sbjct: 75 PGKPQGPPPQGG 86
Score = 27.7 bits (60), Expect = 6.2
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 128 EGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWG-------EGPLPQGVS 180
+GPP PQ + N P G G QG GG G +GP PQG
Sbjct: 48 QGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDK 107
Query: 181 SRGGKCSSSK 190
SR + K
Sbjct: 108 SRSPRSPPGK 117
>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform 2
[Homo sapiens]
Length = 815
Score = 34.7 bits (78), Expect = 0.051
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 114 DESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEG 173
++S E E +E +E PP LLP G +E GPGG G R+ GG G G
Sbjct: 14 NDSEEEERERDEEQEPPP---LLPPP-GTGEEAGPGG---------GDRAPGGESLLGPG 60
Query: 174 PLPQGVSSRG 183
P P + G
Sbjct: 61 PSPPSALTPG 70
>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform 1
[Homo sapiens]
Length = 917
Score = 34.7 bits (78), Expect = 0.051
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 114 DESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEG 173
++S E E +E +E PP LLP G +E GPGG G R+ GG G G
Sbjct: 14 NDSEEEERERDEEQEPPP---LLPPP-GTGEEAGPGG---------GDRAPGGESLLGPG 60
Query: 174 PLPQGVSSRG 183
P P + G
Sbjct: 61 PSPPSALTPG 70
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 34.7 bits (78), Expect = 0.051
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 137 PQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVSSRGG 184
P+EV +Q+ G GG+G N+G S GGG G+G G S R G
Sbjct: 231 PKEVYQQQQYGSGGRGNRNRGNRG--SGGGGGGGGQGSTNYGKSQRRG 276
>gi|40254439 endothelial PAS domain protein 1 [Homo sapiens]
Length = 870
Score = 33.5 bits (75), Expect = 0.11
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 29 PPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKR 88
PP G S W+ G + +PL F G HP+R +LP+ +
Sbjct: 727 PPGGSTSHLMWKRMKNLRGGSCPLMPDKPLSANVPNDKFTQNPMRGLGHPLR-HLPLPQP 785
Query: 89 QEYLRSSGEQVLASFPVQATIDFYDDESTESA 120
+ S GE + FP Q Y D S SA
Sbjct: 786 PSAI-SPGENSKSRFPPQCYATQYQDYSLSSA 816
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.11
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 92 LRSSGEQVLASFPVQATIDFYDDESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGK 151
L S Q L Q + + +S +E +GPP +GG+Q G
Sbjct: 11 LAFSSAQDLNEDVSQEDVPLVISDGGDSEQFLDEERQGPP--------LGGQQSQPSAGD 62
Query: 152 G-RDQGINQGQRSSGGGDHWGEGP---LPQGVSSRGG 184
G +D G QG GG G P PQG +GG
Sbjct: 63 GNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGG 99
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.5 bits (75), Expect = 0.11
Identities = 43/180 (23%), Positives = 61/180 (33%), Gaps = 9/180 (5%)
Query: 3 PEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTP-GDAELTRTGRPLEPR 61
P G +G H G P P+GP+ P P Q G + R P P
Sbjct: 628 PPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPL 687
Query: 62 ADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESAS 121
Q G +G+ G Q + P Q ++ G Q + T+
Sbjct: 688 GPQGPPGPQGSSGPQGHMGPQGPPGP-QGHIGPQGPP-----GPQGHLGPQGPPGTQGMQ 741
Query: 122 EAEEPE--EGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGV 179
P +GPP H + G + GP +G G+N G +GP PQG+
Sbjct: 742 GPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGM 801
Score = 32.0 bits (71), Expect = 0.33
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 125 EPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLP 176
+ ++GPP L P GG Q GP G QGQ++ G H +GP+P
Sbjct: 859 QSQQGPPQGSLGPPPQGGMQ--GPPGP-------QGQQNPARGPHPSQGPIP 901
Score = 30.8 bits (68), Expect = 0.73
Identities = 57/217 (26%), Positives = 73/217 (33%), Gaps = 57/217 (26%)
Query: 4 EAAAGARKARGRGCHCP--GDAPWRPPPPRGPESPAPWRP--WIQT----PGDAELTRTG 55
E AA R RGRG P G P P P +P W PG T
Sbjct: 1140 EEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDTP 1199
Query: 56 RPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDE 115
RP P D H+ S+ +R L+ +AS P + ++D
Sbjct: 1200 RPDHPPHDGHSPASR----------------ERSSSLQGMD---MASLPPRKR-PWHDGP 1239
Query: 116 STESASEAEEP-----------EEGPPPLHLLPQEVGGRQENGPG----GKGRDQGIN-- 158
T E E P GP P +P+ GR + G G RD+
Sbjct: 1240 GTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKS--GRSSSLDGEHHDGYHRDEPFGGP 1297
Query: 159 --QGQRSSGG--GDHWGEG------PLPQGVSSRGGK 185
G S GG G +WG G P +G S GG+
Sbjct: 1298 PGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGR 1334
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 21 GDAPWRPPPPRGPESP-APWRPWIQTPGDA 49
G AP + PPP GP +P APWR + PG A
Sbjct: 32 GRAPPQSPPPAGPGAPGAPWRRGDEGPGPA 61
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 21 GDAPWRPPPPRGPESP-APWRPWIQTPGDA 49
G AP + PPP GP +P APWR + PG A
Sbjct: 32 GRAPPQSPPPAGPGAPGAPWRRGDEGPGPA 61
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 26 RPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQ 64
RP P P S AP RP + P R GRPL PRA Q
Sbjct: 54 RPVSPSAPRSIAPARPGARPP------RPGRPLAPRARQ 86
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 21 GDAPWRPPPPRGPESP-APWRPWIQTPGDA 49
G AP + PPP GP +P APWR + PG A
Sbjct: 32 GRAPPQSPPPAGPGAPGAPWRRGDEGPGPA 61
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 26 RPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQ 64
RP P P S AP RP + P R GRPL PRA Q
Sbjct: 54 RPVSPSAPRSIAPARPGARPP------RPGRPLAPRARQ 86
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 33.1 bits (74), Expect = 0.15
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 PEAAAGARKARGRGCHCPGDAPWRPP-PPRGPESPAP 38
PE A + G P AP RPP PP GP +PAP
Sbjct: 1109 PEQEASPARPAGPTEESPPSAPLRPPEPPAGPPAPAP 1145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,030,259
Number of Sequences: 37866
Number of extensions: 714415
Number of successful extensions: 5754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 5046
Number of HSP's gapped (non-prelim): 900
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.