BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens] (223 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens] 459 e-129 gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens] 459 e-129 gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 43 2e-04 gi|38373671 SEC24-related protein C [Homo sapiens] 38 0.008 gi|38373669 SEC24-related protein C [Homo sapiens] 38 0.008 gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 37 0.010 gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 37 0.010 gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 37 0.010 gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 37 0.014 gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 37 0.014 gi|4557853 transcription factor SOX9 [Homo sapiens] 36 0.023 gi|74027251 tripartite motif-containing 33 protein isoform beta ... 36 0.023 gi|74027249 tripartite motif-containing 33 protein isoform alpha... 36 0.023 gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 35 0.039 gi|167736355 mucin 4 isoform a [Homo sapiens] 35 0.039 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.039 gi|4507399 transcription factor 4 isoform b [Homo sapiens] 35 0.051 gi|145312267 transcription factor 4 isoform a [Homo sapiens] 35 0.051 gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 35 0.051 gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens] 35 0.051 gi|116284392 mucin 2 precursor [Homo sapiens] 35 0.067 gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 35 0.067 gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 35 0.067 gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.067 gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.067 gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.067 gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.067 gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.067 gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ... 34 0.088 gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ... 34 0.088 >gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens] Length = 223 Score = 459 bits (1180), Expect = e-129 Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC Sbjct: 1 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60 Query: 61 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP Sbjct: 61 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120 Query: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP Sbjct: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180 Query: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP Sbjct: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 >gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens] Length = 364 Score = 459 bits (1180), Expect = e-129 Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC Sbjct: 142 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 201 Query: 61 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP Sbjct: 202 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 261 Query: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP Sbjct: 262 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 321 Query: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP Sbjct: 322 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364 >gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo sapiens] Length = 1560 Score = 43.1 bits (100), Expect = 2e-04 Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 20/127 (15%) Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 167 P+ S S HP PS P S+ Q S + S P P P PP P G+ +QN Sbjct: 784 PLGDSPHLPSPHPTRPPSRPPSRPQSVS--RPPSEPPLHPCPPPQAPPTLP--GIFVIQN 839 Query: 168 HFGPNPTSSSVYPASAGTSL-----------GIQPPTPVNSPGTVYSGALGTPGAAGSKE 216 G P +S+ P + G G PP P P + S A+ S+ Sbjct: 840 QLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAV-----ASSSET 894 Query: 217 SSRVPMP 223 SSR+P P Sbjct: 895 SSRLPAP 901 Score = 28.9 bits (63), Expect = 3.7 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 98 RRAAQSRKLNPVPGSYPTQSCHPHLSPSH--PVSQTQHASG-QKLASWPSCT---PGHMP 151 R ++ + ++ P P C P +P + Q+ G AS P+ T P P Sbjct: 802 RPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPP 861 Query: 152 TLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTP 194 P QP G H P+ TSS+V +S+ TS + PTP Sbjct: 862 LRPQSQPPEGPLPPAPHLPPSSTSSAV-ASSSETSSRLPAPTP 903 >gi|38373671 SEC24-related protein C [Homo sapiens] Length = 1094 Score = 37.7 bits (86), Expect = 0.008 Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%) Query: 108 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 148 PVPG T S P S + P S Q GQ + + PS T PG Sbjct: 47 PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106 Query: 149 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 195 P P P V +GP PTS+ +V PA + LG PPT + Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166 Query: 196 NSPGTVYSGALGTPGAAGSKESSRVP 221 S SG+ G GS + P Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188 Score = 28.5 bits (62), Expect = 4.8 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 111 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 168 GSYP Q P LS + HP QT S AS S TP PASG + + Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226 Query: 169 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207 GP S S + P PGT +G LG Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265 >gi|38373669 SEC24-related protein C [Homo sapiens] Length = 1094 Score = 37.7 bits (86), Expect = 0.008 Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%) Query: 108 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 148 PVPG T S P S + P S Q GQ + + PS T PG Sbjct: 47 PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106 Query: 149 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 195 P P P V +GP PTS+ +V PA + LG PPT + Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166 Query: 196 NSPGTVYSGALGTPGAAGSKESSRVP 221 S SG+ G GS + P Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188 Score = 28.5 bits (62), Expect = 4.8 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 111 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 168 GSYP Q P LS + HP QT S AS S TP PASG + + Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226 Query: 169 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207 GP S S + P PGT +G LG Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265 >gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapiens] Length = 781 Score = 37.4 bits (85), Expect = 0.010 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%) Query: 94 SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 147 SS+E A++ + P+ P S P S H SP+H PV A G AS C Sbjct: 512 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 568 Query: 148 GHMPTLPPYQPA 159 H P PP+QPA Sbjct: 569 YHPPAWPPHQPA 580 >gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] Length = 829 Score = 37.4 bits (85), Expect = 0.010 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%) Query: 94 SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 147 SS+E A++ + P+ P S P S H SP+H PV A G AS C Sbjct: 560 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 616 Query: 148 GHMPTLPPYQPA 159 H P PP+QPA Sbjct: 617 YHPPAWPPHQPA 628 >gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] Length = 1970 Score = 37.4 bits (85), Expect = 0.010 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%) Query: 103 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161 S +P SY PT + SPS+ S T + S+ +P + PT P Y P S Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS- 1752 Query: 162 LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 198 N+ +P+ S P+ + TS P +P SP Sbjct: 1753 ----PNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785 Score = 36.2 bits (82), Expect = 0.023 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 8/97 (8%) Query: 103 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161 S +P SY PT + SPS+ S T + S+ +P + PT P Y P S Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1717 Query: 162 LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 198 ++ +P+ S P+ + TS P +P SP Sbjct: 1718 ----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750 Score = 35.8 bits (81), Expect = 0.030 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Query: 110 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169 P PT + SPS+ S T + S+ +P + PT P Y P S ++ Sbjct: 1634 PNYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYS 1686 Query: 170 GPNPTSSSVYPASAGTSLGIQPPTPVNSP 198 +P+ S P+ + TS P +P SP Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715 Score = 35.4 bits (80), Expect = 0.039 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 13/89 (14%) Query: 110 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169 PG Y QS P SP+ P + S+ +P + PT P Y P S ++ Sbjct: 1605 PGGYTPQS--PSYSPTSP------SYSPTSPSYSPTSPNYSPTSPSYSPTS-----PSYS 1651 Query: 170 GPNPTSSSVYPASAGTSLGIQPPTPVNSP 198 +P+ S P+ + TS P +P SP Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Score = 35.0 bits (79), Expect = 0.051 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 103 SRKLNPVPGSYPTQS-----CHPHLSPSHP-VSQTQHASGQKLASWPSCTPGHMPTLPPY 156 S K P SY S P SP+ P S T ++ TP + PT P Y Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895 Query: 157 QPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKE 216 P S + + +P S P + TS P +P SP T G+ +P + G Sbjct: 1896 SPTSPV-----YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP-TSPKGSTYSPTSPGYSP 1949 Query: 217 SS 218 +S Sbjct: 1950 TS 1951 Score = 32.3 bits (72), Expect = 0.33 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 146 TPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPAS---AGTSLGIQPPTPVNSP 198 +P + PT P Y+P S Y +PTS S P S + TS P +P SP Sbjct: 1590 SPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1645 Score = 32.0 bits (71), Expect = 0.44 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 103 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161 S P SY PT + SP++ + ++ S+ +P + PT P Y P+S Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP--SYSPTSPSYSPTSPSYSPSSP 1809 Query: 162 LCYVQN--HFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGT 200 Q+ + +P+ S P+ + TS P +P SP + Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1850 Score = 28.9 bits (63), Expect = 3.7 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 110 PGSYPTQSCHPHLSPSH-PVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 160 P PT + SP + P S T + K +++ +PG+ PT P Y S Sbjct: 1907 PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1958 >gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] Length = 748 Score = 37.0 bits (84), Expect = 0.014 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 110 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169 PG +QS P LS P Q Q PS PG + P +SG + F Sbjct: 381 PGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF 440 Query: 170 GPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219 P+P+ S S A + + P P+N+P V ++ +P + E + Sbjct: 441 LPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEEQQ 491 >gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] Length = 1205 Score = 37.0 bits (84), Expect = 0.014 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 42/163 (25%) Query: 88 FKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHL----SPSHPVSQTQHASGQKLASWP 143 + + +G SA R Q P + PT + +P+ S S Q+Q + Q AS P Sbjct: 883 YPFGTGGSAMYRPQQ-------PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935 Query: 144 SCTPGHMPTLPPYQPASGLCYVQNHFGPN-PTSSSVYPASAGTS---------------- 186 + +P T P P+SG + H GP P SSS Y GT+ Sbjct: 936 TSSPA---TSFPPPPSSGASF--QHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVP 990 Query: 187 ------LGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 PP P+ SP LG P + ++ P+P Sbjct: 991 KKKKMPENFMPPVPITSP---IMNPLGDPQSQMLQQQPSAPVP 1030 >gi|4557853 transcription factor SOX9 [Homo sapiens] Length = 509 Score = 36.2 bits (82), Expect = 0.023 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 12/83 (14%) Query: 112 SYPTQSCHPH-----LSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ 166 S P QS H LSPSH Q QH S Q++A P P + P+ PP + Q Sbjct: 387 SEPGQSQRTHIKTEQLSPSHYSEQQQH-SPQQIAYSPFNLPHYSPSYPP------ITRSQ 439 Query: 167 NHFGPNPTSSSVYPASAGTSLGI 189 + + SSS Y +AG G+ Sbjct: 440 YDYTDHQNSSSYYSHAAGQGTGL 462 >gi|74027251 tripartite motif-containing 33 protein isoform beta [Homo sapiens] Length = 1110 Score = 36.2 bits (82), Expect = 0.023 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%) Query: 111 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 159 G +P S H ++P+ P + T A+ + + PS T P ++P+LP P Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686 Query: 160 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 198 +G + N H P PTS S++ P S+G S TPV P Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743 Query: 199 GTVYSGALGTPGAAG 213 T +G+ G+ G++G Sbjct: 744 STSSTGSRGSCGSSG 758 >gi|74027249 tripartite motif-containing 33 protein isoform alpha [Homo sapiens] Length = 1127 Score = 36.2 bits (82), Expect = 0.023 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%) Query: 111 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 159 G +P S H ++P+ P + T A+ + + PS T P ++P+LP P Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686 Query: 160 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 198 +G + N H P PTS S++ P S+G S TPV P Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743 Query: 199 GTVYSGALGTPGAAG 213 T +G+ G+ G++G Sbjct: 744 STSSTGSRGSCGSSG 758 >gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] Length = 1192 Score = 35.4 bits (80), Expect = 0.039 Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 33/152 (21%) Query: 90 YVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASW------- 142 ++S SSA A+ L+P P S P+ PVS A G++L+ W Sbjct: 77 WISTSSAGTGGAEPPALSPAPAS-----------PARPVSP---APGRRLSLWAVPPGPP 122 Query: 143 ------PSCTPGHMPTLPPY----QPASGLCYVQNHFGPN-PTSSSVYPASAGTSLGIQP 191 P PG PT P+ G + G P SSS +P + L + P Sbjct: 123 LSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAP 182 Query: 192 PTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 P P P + + G G SR+ P Sbjct: 183 PPPAPKPCKTVTTS-GAKAGGGKGAGSRLSWP 213 >gi|167736355 mucin 4 isoform a [Homo sapiens] Length = 5284 Score = 35.4 bits (80), Expect = 0.039 Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 9/136 (6%) Query: 92 SGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVS----QTQHASGQKLASWPSCTP 147 SGS A P+P +Y + + H +P H T HA+ + S S + Sbjct: 960 SGSGKTFTTALISNATPLPVTYASSASTGHTTPLHVTDASSVSTGHATPLPVTSPSSVST 1019 Query: 148 GHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207 GH LP +S H P P +S AS G S + P T +S T + L Sbjct: 1020 GHTTPLPVTDTSS---ESTGHVTPLPV-TSFSSASTGDSTPL-PVTDTSSASTGHVTPLP 1074 Query: 208 TPGAAGSKESSRVPMP 223 + + P+P Sbjct: 1075 VTSLSSASTGDTTPLP 1090 Score = 33.1 bits (74), Expect = 0.20 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%) Query: 108 PVPGSYPTQSCHPHLSP----SHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLC 163 P+P + P+ + H +P S + T HA+ + S S + GH LP +S Sbjct: 3280 PLPVTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSA-- 3337 Query: 164 YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSG---ALGTPGAAGSKESSRV 220 P P +S P+SA T G P V P + +G L GA+ + Sbjct: 3338 -STGDTTPLPVTS---PSSAST--GHTTPLHVTIPSSASTGDTSTLPVTGASSASTGHAT 3391 Query: 221 PMP 223 P+P Sbjct: 3392 PLP 3394 Score = 31.2 bits (69), Expect = 0.74 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%) Query: 131 TQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQ 190 T HA+ + S S + GH LP P+S H P P +S ++ S G Sbjct: 3867 TGHATPLPVTSTSSVSTGHATPLPVTSPSSA---STGHATPVPVTS-----TSSASTGDT 3918 Query: 191 PPTPVNSPGTVYSG-----ALGTPGAAGSKESSRVPM 222 P PV + ++ +G + +P +A ++S +P+ Sbjct: 3919 TPLPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPV 3955 Score = 27.7 bits (60), Expect = 8.2 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 17/140 (12%) Query: 100 AAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQ----KLASWPSCTPGHMPTLPP 155 +A + P+P + P+ + H +P H + ++G + S S + GH LP Sbjct: 2328 SASTGDTTPLPVTSPSSASTGHATPLHVTDASSVSTGDTTPLPVTSSSSASSGHTTPLPV 2387 Query: 156 YQPASGLCYVQNHFGPNPTSSS------------VYPASAGTSLGIQPPTPVNSPGTVYS 203 +S TSS+ + AS G + + P T V+S T ++ Sbjct: 2388 TDASSASTGDTTPLPVTDTSSASTGHATHLPVTGLSSASTGDTTRL-PVTNVSSASTGHA 2446 Query: 204 GALGTPGAAGSKESSRVPMP 223 L + + P+P Sbjct: 2447 TPLPVTSTSSASTGDTTPLP 2466 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 35.4 bits (80), Expect = 0.039 Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 23/130 (17%) Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQH--------ASGQKLASWPSCTPG------HMPTL 153 P P P Q PH P HP Q +S +A P PG + Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131 Query: 154 PPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAG 213 PP P + + GP PT PA G PPTP + SG TP AG Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPP---PAVTSAPPGAPPPTPPS------SGVPTTPPQAG 182 Query: 214 SKESSRVPMP 223 +P Sbjct: 183 GPPPPPAAVP 192 >gi|4507399 transcription factor 4 isoform b [Homo sapiens] Length = 667 Score = 35.0 bits (79), Expect = 0.051 Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%) Query: 92 SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 139 SG + A + +P S S HPH LS PSH P T H SG Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290 Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 186 S SCTP PA+G + + G S S+Y P S Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340 Query: 187 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 218 P TPV SP ++ +G G SS Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372 >gi|145312267 transcription factor 4 isoform a [Homo sapiens] Length = 671 Score = 35.0 bits (79), Expect = 0.051 Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%) Query: 92 SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 139 SG + A + +P S S HPH LS PSH P T H SG Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290 Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 186 S SCTP PA+G + + G S S+Y P S Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340 Query: 187 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 218 P TPV SP ++ +G G SS Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372 >gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] Length = 788 Score = 35.0 bits (79), Expect = 0.051 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Query: 101 AQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 160 + S L P + +QS P LS P Q Q PS PG + P +S Sbjct: 412 SSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSS 471 Query: 161 GLCYVQNHFGPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKES 217 G + F P+P+ S S A + + P P+N+P V ++ +P + E Sbjct: 472 GPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEE 529 Query: 218 SR 219 + Sbjct: 530 QQ 531 >gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens] Length = 1494 Score = 35.0 bits (79), Expect = 0.051 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%) Query: 108 PVPGSYPTQSCHP-HLSPSHPVSQTQHASGQKLASWPSCTPGHM--------PTLPPYQP 158 P+P + P + P H++ V + QH++ L+ P +P HM P Sbjct: 402 PLPSNLPLPTVKPGHMNHGSHVQRVQHSASTSLSPSPVTSPVHMMGTGIGRIEASPQRSR 461 Query: 159 ASGLCYVQNHF-----GPNPTSS--SVYPASAGTSLGIQPPTPVNSPGTVYSG 204 +S +F GP TSS V P S +++G P+ +SP T G Sbjct: 462 SSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDG 514 >gi|116284392 mucin 2 precursor [Homo sapiens] Length = 5179 Score = 34.7 bits (78), Expect = 0.067 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%) Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 167 P P T + P +PS P+S T S P+ TP PT P P + Sbjct: 1438 PSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPS-PPTTTPSPPTTTTTTPPP 1496 Query: 168 HFGPN-PTSSSVYPASAGTSLGIQPPTPVNSPGT 200 P+ PT++ + P ++ T+L PPT SP T Sbjct: 1497 TTTPSPPTTTPITPPASTTTL---PPTTTPSPPT 1527 Score = 29.3 bits (64), Expect = 2.8 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMP----TLPPYQPASGLC 163 P P + T + P +PS P + T S P+ TP P TLPP S Sbjct: 1586 PSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPS--- 1642 Query: 164 YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223 P PT+++ P + S PPT + + P S + P P Sbjct: 1643 -------PPPTTTTTPPPTTTPS----PPTTTTPSPPITTTTTPPPTTTPSSPITTTPSP 1691 >gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens] Length = 2462 Score = 34.7 bits (78), Expect = 0.067 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%) Query: 93 GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 139 GS + +A+Q RKL P S P P HP+S +H S L Sbjct: 1563 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1621 Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180 A P+ P +P A+ Y+ H PNPT +YP Sbjct: 1622 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1657 >gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens] Length = 2524 Score = 34.7 bits (78), Expect = 0.067 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%) Query: 93 GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 139 GS + +A+Q RKL P S P P HP+S +H S L Sbjct: 1579 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1637 Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180 A P+ P +P A+ Y+ H PNPT +YP Sbjct: 1638 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1673 >gi|55953110 retinoblastoma protein-binding zinc finger protein isoform c [Homo sapiens] Length = 1481 Score = 34.7 bits (78), Expect = 0.067 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%) Query: 110 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155 PGS PT P + PS P QT S +L PS P P L PP Sbjct: 728 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 787 Query: 156 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208 P L + P+P S + A+A + L I PT SP + + + G Sbjct: 788 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 847 Query: 209 PGAAGSKESS 218 P + S SS Sbjct: 848 PTLSSSSSSS 857 >gi|20336260 retinoblastoma protein-binding zinc finger protein isoform b [Homo sapiens] Length = 1682 Score = 34.7 bits (78), Expect = 0.067 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%) Query: 110 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155 PGS PT P + PS P QT S +L PS P P L PP Sbjct: 929 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988 Query: 156 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208 P L + P+P S + A+A + L I PT SP + + + G Sbjct: 989 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048 Query: 209 PGAAGSKESS 218 P + S SS Sbjct: 1049 PTLSSSSSSS 1058 >gi|20336258 retinoblastoma protein-binding zinc finger protein isoform a [Homo sapiens] Length = 1718 Score = 34.7 bits (78), Expect = 0.067 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%) Query: 110 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155 PGS PT P + PS P QT S +L PS P P L PP Sbjct: 929 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988 Query: 156 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208 P L + P+P S + A+A + L I PT SP + + + G Sbjct: 989 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048 Query: 209 PGAAGSKESS 218 P + S SS Sbjct: 1049 PTLSSSSSSS 1058 >gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] Length = 694 Score = 34.7 bits (78), Expect = 0.067 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%) Query: 119 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 170 HP +P+ S+ + GQK P+ PG PP + AS +H G Sbjct: 196 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 255 Query: 171 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219 SS PA + +Q P +PG+V S A PG G+ SR Sbjct: 256 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 301 >gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] Length = 690 Score = 34.7 bits (78), Expect = 0.067 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%) Query: 119 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 170 HP +P+ S+ + GQK P+ PG PP + AS +H G Sbjct: 192 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 251 Query: 171 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219 SS PA + +Q P +PG+V S A PG G+ SR Sbjct: 252 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 297 >gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo sapiens] Length = 824 Score = 34.3 bits (77), Expect = 0.088 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 14/143 (9%) Query: 86 SVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP-- 143 S+F+Y G S+ + + L P P + LS S T S + P Sbjct: 390 SIFEYEPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTP 449 Query: 144 -SCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVY 202 S P PT PP +P L YVQ+H +S+Y +S SL + P S + + Sbjct: 450 SSRAPALSPTRPPKKP---LDYVQDHSSGVFNEASLYQSSIDRSL--ERPMSSASMASDF 504 Query: 203 ------SGALGTPGAAGSKESSR 219 A+G P G + +SR Sbjct: 505 RKRRKSEPAVGPPRGLGDQSASR 527 >gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo sapiens] Length = 731 Score = 34.3 bits (77), Expect = 0.088 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 14/143 (9%) Query: 86 SVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP-- 143 S+F+Y G S+ + + L P P + LS S T S + P Sbjct: 297 SIFEYEPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTP 356 Query: 144 -SCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVY 202 S P PT PP +P L YVQ+H +S+Y +S SL + P S + + Sbjct: 357 SSRAPALSPTRPPKKP---LDYVQDHSSGVFNEASLYQSSIDRSL--ERPMSSASMASDF 411 Query: 203 ------SGALGTPGAAGSKESSR 219 A+G P G + +SR Sbjct: 412 RKRRKSEPAVGPPRGLGDQSASR 434 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.132 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,291,391 Number of Sequences: 37866 Number of extensions: 564979 Number of successful extensions: 3227 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 238 Number of HSP's that attempted gapping in prelim test: 2886 Number of HSP's gapped (non-prelim): 541 length of query: 223 length of database: 18,247,518 effective HSP length: 98 effective length of query: 125 effective length of database: 14,536,650 effective search space: 1817081250 effective search space used: 1817081250 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.