Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 94818879

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|94818879 rhomboid domain containing 2 isoform b [Homo
sapiens]
         (223 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]     459   e-129
gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]     459   e-129
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    43   2e-04
gi|38373671 SEC24-related protein C [Homo sapiens]                     38   0.008
gi|38373669 SEC24-related protein C [Homo sapiens]                     38   0.008
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi...    37   0.010
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]    37   0.010
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             37   0.010
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       37   0.014
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]                  37   0.014
gi|4557853 transcription factor SOX9 [Homo sapiens]                    36   0.023
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    36   0.023
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    36   0.023
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          35   0.039
gi|167736355 mucin 4 isoform a [Homo sapiens]                          35   0.039
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    35   0.039
gi|4507399 transcription factor 4 isoform b [Homo sapiens]             35   0.051
gi|145312267 transcription factor 4 isoform a [Homo sapiens]           35   0.051
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       35   0.051
gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]         35   0.051
gi|116284392 mucin 2 precursor [Homo sapiens]                          35   0.067
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    35   0.067
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    35   0.067
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    35   0.067
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    35   0.067
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    35   0.067
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             35   0.067
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              35   0.067
gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ...    34   0.088
gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ...    34   0.088

>gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]
          Length = 223

 Score =  459 bits (1180), Expect = e-129
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60
           MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
Sbjct: 1   MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60

Query: 61  YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120
           YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP
Sbjct: 61  YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120

Query: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180
           HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP
Sbjct: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180

Query: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
           ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP
Sbjct: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223


>gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]
          Length = 364

 Score =  459 bits (1180), Expect = e-129
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60
           MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
Sbjct: 142 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 201

Query: 61  YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120
           YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP
Sbjct: 202 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 261

Query: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180
           HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP
Sbjct: 262 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 321

Query: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
           ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP
Sbjct: 322 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 20/127 (15%)

Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 167
           P+  S    S HP   PS P S+ Q  S  +  S P   P   P  PP  P  G+  +QN
Sbjct: 784 PLGDSPHLPSPHPTRPPSRPPSRPQSVS--RPPSEPPLHPCPPPQAPPTLP--GIFVIQN 839

Query: 168 HFGPNPTSSSVYPASAGTSL-----------GIQPPTPVNSPGTVYSGALGTPGAAGSKE 216
             G  P +S+  P + G              G  PP P   P +  S       A+ S+ 
Sbjct: 840 QLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAV-----ASSSET 894

Query: 217 SSRVPMP 223
           SSR+P P
Sbjct: 895 SSRLPAP 901



 Score = 28.9 bits (63), Expect = 3.7
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 98  RRAAQSRKLNPVPGSYPTQSCHPHLSPSH--PVSQTQHASG-QKLASWPSCT---PGHMP 151
           R  ++ + ++  P   P   C P  +P     +   Q+  G    AS P+ T   P   P
Sbjct: 802 RPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPP 861

Query: 152 TLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTP 194
             P  QP  G      H  P+ TSS+V  +S+ TS  +  PTP
Sbjct: 862 LRPQSQPPEGPLPPAPHLPPSSTSSAV-ASSSETSSRLPAPTP 903


>gi|38373671 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%)

Query: 108 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 148
           PVPG   T     S  P  S + P S  Q   GQ          + + PS T      PG
Sbjct: 47  PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106

Query: 149 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 195
             P   P  P      V   +GP PTS+             +V PA   + LG  PPT +
Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166

Query: 196 NSPGTVYSGALGTPGAAGSKESSRVP 221
            S     SG+    G  GS    + P
Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188



 Score = 28.5 bits (62), Expect = 4.8
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 111 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 168
           GSYP Q   P LS +  HP  QT   S    AS  S TP          PASG   + + 
Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226

Query: 169 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207
            GP     S    S      +  P     PGT  +G LG
Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265


>gi|38373669 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%)

Query: 108 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 148
           PVPG   T     S  P  S + P S  Q   GQ          + + PS T      PG
Sbjct: 47  PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106

Query: 149 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 195
             P   P  P      V   +GP PTS+             +V PA   + LG  PPT +
Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166

Query: 196 NSPGTVYSGALGTPGAAGSKESSRVP 221
            S     SG+    G  GS    + P
Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188



 Score = 28.5 bits (62), Expect = 4.8
 Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 111 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 168
           GSYP Q   P LS +  HP  QT   S    AS  S TP          PASG   + + 
Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226

Query: 169 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207
            GP     S    S      +  P     PGT  +G LG
Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265


>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
           sapiens]
          Length = 781

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 94  SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 147
           SS+E   A++  + P+    P S P  S   H SP+H  PV     A G   AS   C  
Sbjct: 512 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 568

Query: 148 GHMPTLPPYQPA 159
            H P  PP+QPA
Sbjct: 569 YHPPAWPPHQPA 580


>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]
          Length = 829

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 94  SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 147
           SS+E   A++  + P+    P S P  S   H SP+H  PV     A G   AS   C  
Sbjct: 560 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 616

Query: 148 GHMPTLPPYQPA 159
            H P  PP+QPA
Sbjct: 617 YHPPAWPPHQPA 628


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 103  SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161
            S   +P   SY PT   +   SPS+  S T  +      S+   +P + PT P Y P S 
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS- 1752

Query: 162  LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 198
                 N+   +P+ S   P+ + TS    P +P  SP
Sbjct: 1753 ----PNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785



 Score = 36.2 bits (82), Expect = 0.023
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 103  SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161
            S   +P   SY PT   +   SPS+  S T  +      S+   +P + PT P Y P S 
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1717

Query: 162  LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 198
                 ++   +P+ S   P+ + TS    P +P  SP
Sbjct: 1718 ----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750



 Score = 35.8 bits (81), Expect = 0.030
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 110  PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169
            P   PT   +   SPS+  S T  +      S+   +P + PT P Y P S      ++ 
Sbjct: 1634 PNYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYS 1686

Query: 170  GPNPTSSSVYPASAGTSLGIQPPTPVNSP 198
              +P+ S   P+ + TS    P +P  SP
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715



 Score = 35.4 bits (80), Expect = 0.039
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 13/89 (14%)

Query: 110  PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169
            PG Y  QS  P  SP+ P      +      S+   +P + PT P Y P S      ++ 
Sbjct: 1605 PGGYTPQS--PSYSPTSP------SYSPTSPSYSPTSPNYSPTSPSYSPTS-----PSYS 1651

Query: 170  GPNPTSSSVYPASAGTSLGIQPPTPVNSP 198
              +P+ S   P+ + TS    P +P  SP
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680



 Score = 35.0 bits (79), Expect = 0.051
 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 103  SRKLNPVPGSYPTQS-----CHPHLSPSHP-VSQTQHASGQKLASWPSCTPGHMPTLPPY 156
            S K  P   SY   S       P  SP+ P  S T         ++   TP + PT P Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895

Query: 157  QPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKE 216
             P S +     +   +P  S   P  + TS    P +P  SP T   G+  +P + G   
Sbjct: 1896 SPTSPV-----YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP-TSPKGSTYSPTSPGYSP 1949

Query: 217  SS 218
            +S
Sbjct: 1950 TS 1951



 Score = 32.3 bits (72), Expect = 0.33
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 146  TPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPAS---AGTSLGIQPPTPVNSP 198
            +P + PT P Y+P S   Y       +PTS S  P S   + TS    P +P  SP
Sbjct: 1590 SPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1645



 Score = 32.0 bits (71), Expect = 0.44
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 103  SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 161
            S    P   SY PT   +   SP++  +   ++      S+   +P + PT P Y P+S 
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP--SYSPTSPSYSPTSPSYSPSSP 1809

Query: 162  LCYVQN--HFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGT 200
                Q+  +   +P+ S   P+ + TS    P +P  SP +
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1850



 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 110  PGSYPTQSCHPHLSPSH-PVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 160
            P   PT   +   SP + P S T   +  K +++   +PG+ PT P Y   S
Sbjct: 1907 PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1958


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 110 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 169
           PG   +QS  P LS   P  Q Q          PS  PG   + P    +SG     + F
Sbjct: 381 PGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF 440

Query: 170 GPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219
            P+P+   S S   A    +  +  P P+N+P  V   ++ +P  +   E  +
Sbjct: 441 LPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEEQQ 491


>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
          Length = 1205

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 42/163 (25%)

Query: 88   FKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHL----SPSHPVSQTQHASGQKLASWP 143
            + + +G SA  R  Q       P + PT + +P+     S S    Q+Q  + Q  AS P
Sbjct: 883  YPFGTGGSAMYRPQQ-------PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935

Query: 144  SCTPGHMPTLPPYQPASGLCYVQNHFGPN-PTSSSVYPASAGTS---------------- 186
            + +P    T  P  P+SG  +   H GP  P SSS Y    GT+                
Sbjct: 936  TSSPA---TSFPPPPSSGASF--QHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVP 990

Query: 187  ------LGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
                      PP P+ SP       LG P +   ++    P+P
Sbjct: 991  KKKKMPENFMPPVPITSP---IMNPLGDPQSQMLQQQPSAPVP 1030


>gi|4557853 transcription factor SOX9 [Homo sapiens]
          Length = 509

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 112 SYPTQSCHPH-----LSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ 166
           S P QS   H     LSPSH   Q QH S Q++A  P   P + P+ PP      +   Q
Sbjct: 387 SEPGQSQRTHIKTEQLSPSHYSEQQQH-SPQQIAYSPFNLPHYSPSYPP------ITRSQ 439

Query: 167 NHFGPNPTSSSVYPASAGTSLGI 189
             +  +  SSS Y  +AG   G+
Sbjct: 440 YDYTDHQNSSSYYSHAAGQGTGL 462


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%)

Query: 111 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 159
           G +P  S H   ++P+ P + T  A+  +  + PS T          P ++P+LP   P 
Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686

Query: 160 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 198
               +G   + N         H  P PTS        S++ P S+G S      TPV  P
Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743

Query: 199 GTVYSGALGTPGAAG 213
            T  +G+ G+ G++G
Sbjct: 744 STSSTGSRGSCGSSG 758


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%)

Query: 111 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 159
           G +P  S H   ++P+ P + T  A+  +  + PS T          P ++P+LP   P 
Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686

Query: 160 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 198
               +G   + N         H  P PTS        S++ P S+G S      TPV  P
Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743

Query: 199 GTVYSGALGTPGAAG 213
            T  +G+ G+ G++G
Sbjct: 744 STSSTGSRGSCGSSG 758


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 33/152 (21%)

Query: 90  YVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASW------- 142
           ++S SSA    A+   L+P P S           P+ PVS    A G++L+ W       
Sbjct: 77  WISTSSAGTGGAEPPALSPAPAS-----------PARPVSP---APGRRLSLWAVPPGPP 122

Query: 143 ------PSCTPGHMPTLPPY----QPASGLCYVQNHFGPN-PTSSSVYPASAGTSLGIQP 191
                 P   PG  PT         P+ G    +   G   P SSS +P +    L + P
Sbjct: 123 LSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAP 182

Query: 192 PTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
           P P   P    + + G     G    SR+  P
Sbjct: 183 PPPAPKPCKTVTTS-GAKAGGGKGAGSRLSWP 213


>gi|167736355 mucin 4 isoform a [Homo sapiens]
          Length = 5284

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 92   SGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVS----QTQHASGQKLASWPSCTP 147
            SGS      A      P+P +Y + +   H +P H        T HA+   + S  S + 
Sbjct: 960  SGSGKTFTTALISNATPLPVTYASSASTGHTTPLHVTDASSVSTGHATPLPVTSPSSVST 1019

Query: 148  GHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 207
            GH   LP    +S       H  P P  +S   AS G S  + P T  +S  T +   L 
Sbjct: 1020 GHTTPLPVTDTSS---ESTGHVTPLPV-TSFSSASTGDSTPL-PVTDTSSASTGHVTPLP 1074

Query: 208  TPGAAGSKESSRVPMP 223
                + +      P+P
Sbjct: 1075 VTSLSSASTGDTTPLP 1090



 Score = 33.1 bits (74), Expect = 0.20
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 108  PVPGSYPTQSCHPHLSP----SHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLC 163
            P+P + P+ +   H +P    S   + T HA+   + S  S + GH   LP    +S   
Sbjct: 3280 PLPVTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSA-- 3337

Query: 164  YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSG---ALGTPGAAGSKESSRV 220
                   P P +S   P+SA T  G   P  V  P +  +G    L   GA+ +      
Sbjct: 3338 -STGDTTPLPVTS---PSSAST--GHTTPLHVTIPSSASTGDTSTLPVTGASSASTGHAT 3391

Query: 221  PMP 223
            P+P
Sbjct: 3392 PLP 3394



 Score = 31.2 bits (69), Expect = 0.74
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 131  TQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQ 190
            T HA+   + S  S + GH   LP   P+S       H  P P +S     ++  S G  
Sbjct: 3867 TGHATPLPVTSTSSVSTGHATPLPVTSPSSA---STGHATPVPVTS-----TSSASTGDT 3918

Query: 191  PPTPVNSPGTVYSG-----ALGTPGAAGSKESSRVPM 222
             P PV +  ++ +G      + +P +A   ++S +P+
Sbjct: 3919 TPLPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPV 3955



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 17/140 (12%)

Query: 100  AAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQ----KLASWPSCTPGHMPTLPP 155
            +A +    P+P + P+ +   H +P H    +  ++G      + S  S + GH   LP 
Sbjct: 2328 SASTGDTTPLPVTSPSSASTGHATPLHVTDASSVSTGDTTPLPVTSSSSASSGHTTPLPV 2387

Query: 156  YQPASGLCYVQNHFGPNPTSSS------------VYPASAGTSLGIQPPTPVNSPGTVYS 203
               +S             TSS+            +  AS G +  + P T V+S  T ++
Sbjct: 2388 TDASSASTGDTTPLPVTDTSSASTGHATHLPVTGLSSASTGDTTRL-PVTNVSSASTGHA 2446

Query: 204  GALGTPGAAGSKESSRVPMP 223
              L     + +      P+P
Sbjct: 2447 TPLPVTSTSSASTGDTTPLP 2466


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 23/130 (17%)

Query: 108 PVPGSYPTQSCHPHLSPSHPVSQTQH--------ASGQKLASWPSCTPG------HMPTL 153
           P P   P Q   PH  P HP    Q         +S   +A  P   PG         + 
Sbjct: 72  PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131

Query: 154 PPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAG 213
           PP  P +      +  GP PT     PA      G  PPTP +      SG   TP  AG
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPP---PAVTSAPPGAPPPTPPS------SGVPTTPPQAG 182

Query: 214 SKESSRVPMP 223
                   +P
Sbjct: 183 GPPPPPAAVP 192


>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
          Length = 667

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%)

Query: 92  SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 139
           SG +    A      + +P S    S HPH  LS PSH         P   T H SG   
Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290

Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 186
            S  SCTP          PA+G   +  + G     S            S+Y P     S
Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340

Query: 187 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 218
               P TPV SP ++ +G        G   SS
Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372


>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
          Length = 671

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%)

Query: 92  SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 139
           SG +    A      + +P S    S HPH  LS PSH         P   T H SG   
Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290

Query: 140 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 186
            S  SCTP          PA+G   +  + G     S            S+Y P     S
Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340

Query: 187 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 218
               P TPV SP ++ +G        G   SS
Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 101 AQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 160
           + S  L   P +  +QS  P LS   P  Q Q          PS  PG   + P    +S
Sbjct: 412 SSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSS 471

Query: 161 GLCYVQNHFGPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKES 217
           G     + F P+P+   S S   A    +  +  P P+N+P  V   ++ +P  +   E 
Sbjct: 472 GPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEE 529

Query: 218 SR 219
            +
Sbjct: 530 QQ 531


>gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]
          Length = 1494

 Score = 35.0 bits (79), Expect = 0.051
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 108 PVPGSYPTQSCHP-HLSPSHPVSQTQHASGQKLASWPSCTPGHM--------PTLPPYQP 158
           P+P + P  +  P H++    V + QH++   L+  P  +P HM           P    
Sbjct: 402 PLPSNLPLPTVKPGHMNHGSHVQRVQHSASTSLSPSPVTSPVHMMGTGIGRIEASPQRSR 461

Query: 159 ASGLCYVQNHF-----GPNPTSS--SVYPASAGTSLGIQPPTPVNSPGTVYSG 204
           +S       +F     GP  TSS   V P S  +++G   P+  +SP T   G
Sbjct: 462 SSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDG 514


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 108  PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 167
            P P    T +  P  +PS P+S T         S P+ TP   PT  P  P +       
Sbjct: 1438 PSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPS-PPTTTPSPPTTTTTTPPP 1496

Query: 168  HFGPN-PTSSSVYPASAGTSLGIQPPTPVNSPGT 200
               P+ PT++ + P ++ T+L   PPT   SP T
Sbjct: 1497 TTTPSPPTTTPITPPASTTTL---PPTTTPSPPT 1527



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 108  PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMP----TLPPYQPASGLC 163
            P P +  T +  P  +PS P + T         S P+ TP   P    TLPP    S   
Sbjct: 1586 PSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPS--- 1642

Query: 164  YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
                   P PT+++  P +   S    PPT       + +     P    S   +  P P
Sbjct: 1643 -------PPPTTTTTPPPTTTPS----PPTTTTPSPPITTTTTPPPTTTPSSPITTTPSP 1691


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 93   GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 139
            GS +  +A+Q RKL   P        S  P   P HP+S  +H            S   L
Sbjct: 1563 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1621

Query: 140  ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180
            A  P+  P  +P       A+   Y+  H  PNPT   +YP
Sbjct: 1622 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1657


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 93   GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 139
            GS +  +A+Q RKL   P        S  P   P HP+S  +H            S   L
Sbjct: 1579 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1637

Query: 140  ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180
            A  P+  P  +P       A+   Y+  H  PNPT   +YP
Sbjct: 1638 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1673


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 110 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155
           PGS    PT    P + PS P  QT   S  +L        PS  P   P L      PP
Sbjct: 728 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 787

Query: 156 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208
             P   L    +   P+P  S +  A+A + L I  PT   SP  +        + + G 
Sbjct: 788 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 847

Query: 209 PGAAGSKESS 218
           P  + S  SS
Sbjct: 848 PTLSSSSSSS 857


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 110  PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155
            PGS    PT    P + PS P  QT   S  +L        PS  P   P L      PP
Sbjct: 929  PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988

Query: 156  YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208
              P   L    +   P+P  S +  A+A + L I  PT   SP  +        + + G 
Sbjct: 989  LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048

Query: 209  PGAAGSKESS 218
            P  + S  SS
Sbjct: 1049 PTLSSSSSSS 1058


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 110  PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 155
            PGS    PT    P + PS P  QT   S  +L        PS  P   P L      PP
Sbjct: 929  PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988

Query: 156  YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 208
              P   L    +   P+P  S +  A+A + L I  PT   SP  +        + + G 
Sbjct: 989  LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048

Query: 209  PGAAGSKESS 218
            P  + S  SS
Sbjct: 1049 PTLSSSSSSS 1058


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 119 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 170
           HP  +P+   S+ +   GQK    P+  PG     PP + AS              +H G
Sbjct: 196 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 255

Query: 171 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219
                SS  PA    +  +Q   P  +PG+V S A   PG  G+   SR
Sbjct: 256 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 301


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 119 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 170
           HP  +P+   S+ +   GQK    P+  PG     PP + AS              +H G
Sbjct: 192 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 251

Query: 171 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 219
                SS  PA    +  +Q   P  +PG+V S A   PG  G+   SR
Sbjct: 252 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 297


>gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo
           sapiens]
          Length = 824

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 86  SVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP-- 143
           S+F+Y  G S+  +  +   L   P   P +     LS S     T   S    +  P  
Sbjct: 390 SIFEYEPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTP 449

Query: 144 -SCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVY 202
            S  P   PT PP +P   L YVQ+H       +S+Y +S   SL  + P    S  + +
Sbjct: 450 SSRAPALSPTRPPKKP---LDYVQDHSSGVFNEASLYQSSIDRSL--ERPMSSASMASDF 504

Query: 203 ------SGALGTPGAAGSKESSR 219
                   A+G P   G + +SR
Sbjct: 505 RKRRKSEPAVGPPRGLGDQSASR 527


>gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo
           sapiens]
          Length = 731

 Score = 34.3 bits (77), Expect = 0.088
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 86  SVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWP-- 143
           S+F+Y  G S+  +  +   L   P   P +     LS S     T   S    +  P  
Sbjct: 297 SIFEYEPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTP 356

Query: 144 -SCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVY 202
            S  P   PT PP +P   L YVQ+H       +S+Y +S   SL  + P    S  + +
Sbjct: 357 SSRAPALSPTRPPKKP---LDYVQDHSSGVFNEASLYQSSIDRSL--ERPMSSASMASDF 411

Query: 203 ------SGALGTPGAAGSKESSR 219
                   A+G P   G + +SR
Sbjct: 412 RKRRKSEPAVGPPRGLGDQSASR 434


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,291,391
Number of Sequences: 37866
Number of extensions: 564979
Number of successful extensions: 3227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 2886
Number of HSP's gapped (non-prelim): 541
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press