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Search of human proteins with 94536834
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
(489 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 982 0.0
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 868 0.0
gi|5902142 DNA polymerase sigma [Homo sapiens] 498 e-141
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 62 2e-09
gi|167555099 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|167555097 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|167555095 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 48 2e-05
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 48 2e-05
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 48 2e-05
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 47 3e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 47 5e-05
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 45 2e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 41 0.002
gi|189491742 ataxin 7 isoform b [Homo sapiens] 40 0.004
gi|4506797 ataxin 7 isoform a [Homo sapiens] 40 0.004
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 40 0.005
gi|161016767 mucin 21 [Homo sapiens] 40 0.005
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 39 0.014
gi|33188445 microfilament and actin filament cross-linker protei... 38 0.018
gi|28559039 mediator complex subunit 1 [Homo sapiens] 37 0.031
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 37 0.031
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 37 0.031
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 37 0.031
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 37 0.041
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 37 0.041
gi|33188443 microfilament and actin filament cross-linker protei... 37 0.041
gi|39777614 SS18-like protein 1 [Homo sapiens] 37 0.041
gi|55741677 SET domain containing 1A [Homo sapiens] 37 0.053
gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo sa... 37 0.053
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 982 bits (2538), Expect = 0.0
Identities = 489/489 (100%), Positives = 489/489 (100%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS
Sbjct: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
Query: 361 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 420
GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT
Sbjct: 361 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 420
Query: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 480
TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR
Sbjct: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 480
Query: 481 DAPLSDLCR 489
DAPLSDLCR
Sbjct: 481 DAPLSDLCR 489
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 868 bits (2242), Expect = 0.0
Identities = 442/489 (90%), Positives = 442/489 (90%), Gaps = 47/489 (9%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
QWGLKNRPEPSCN
Sbjct: 301 QWGLKNRPEPSCN----------------------------------------------- 313
Query: 361 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 420
GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT
Sbjct: 314 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 373
Query: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 480
TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR
Sbjct: 374 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 433
Query: 481 DAPLSDLCR 489
DAPLSDLCR
Sbjct: 434 DAPLSDLCR 442
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 498 bits (1282), Expect = e-141
Identities = 255/386 (66%), Positives = 296/386 (76%), Gaps = 6/386 (1%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSP PEE MR EVV RIE+V+K+LWP+ADVQIFGSF TGLYLPTSDIDLVVFGKWE P
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
L LE+ALRKH VA+ S+KVLDKATVPIIKLTD TEVKVDISFN++ GVRAA+ IK++
Sbjct: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
KKY +LPYL+LVLKQFLLQRDLNEVFTGGI SYSL LMA+SFLQLHPR DA + N G
Sbjct: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
+LL+EFFELYGR+FNYLKTGIRIK+GG+Y+AK+E+ K M GYRPSML IEDPL PGNDV
Sbjct: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQ FDYAY+VLSHAVSP+A+ YPN + ES LGRII+VT EV YR WI +
Sbjct: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
Query: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
+WG K P P + I +++ CN ++ E + + SLS SS
Sbjct: 301 KWGSKAHPSPGMDSR----IKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSG 356
Query: 361 GPVSSSSATQSSSSDVDSDATPCKTP 386
S+SS + S SDVDSD PC TP
Sbjct: 357 S--SASSVSSLSGSDVDSDTPPCTTP 380
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 10/172 (5%)
Query: 2 SPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVV----FGKWE 57
SP E++ R + +ES I++ +P + +FGS K G SD+D+ + E
Sbjct: 1013 SPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAE 1072
Query: 58 NLP-LWTLEE---ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRA 113
L + T+EE LRKH + ++ + A VPI+K + ++VDIS +
Sbjct: 1073 GLDCVRTIEELARVLRKH--SGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHN 1130
Query: 114 ADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
L+ ++ P + YL +K F D+ + G + SY+ LM + FLQ
Sbjct: 1131 TRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQ 1182
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLP--LW 62
E + R+E+ +E+V + P ++++GS + L SD+++ + F + P L
Sbjct: 311 ENLEQRLEIKRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQFPAIMSQPDVLL 370
Query: 63 TLEEALRKHKVADEDSVKVLDK---ATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKD 119
++E L+ + DS +D A VP++ + + + +S +N +
Sbjct: 371 LVQECLK-----NSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTA 425
Query: 120 FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP 175
K P L LV+ + + ++ GG+ Y LMA+ FLQ R++ +P
Sbjct: 426 LGKLEPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQ--QRKEPLLP 479
>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 47.4 bits (111), Expect = 3e-05
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 34/251 (13%)
Query: 235 QPGNDVGRSSYGAMQVKQAFD-YAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVAT 293
+PGN VG S+ G+ +D Y + S PN+ ES D+ +
Sbjct: 431 EPGNKVGHSNTGSDSNSDGYDSYDFDDKSMQGDD-----PNSSDES------NGNDDANS 479
Query: 294 YRDWISKQWG--LKNRPEPSCNGNGVTL----------IVDTQQLDKCNN--NLSEENEA 339
D S G N E NGNG DT D N N +++N+
Sbjct: 480 ESDNNSSSRGDASYNSDESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDK 539
Query: 340 L--GKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGN 397
GK +S +S+S S SSNSS SS S + S+S DSD++ + S+ +
Sbjct: 540 SDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDS------SDSSDS 593
Query: 398 RVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLM 457
S +SS + S+ ++++S+S + S + S SK + +S S
Sbjct: 594 DSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDN 653
Query: 458 TNKQHQGKSNN 468
++ S+N
Sbjct: 654 SDSSDSSNSSN 664
Score = 47.0 bits (110), Expect = 4e-05
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Query: 322 DTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDAT 381
D+ D ++N S ++++ S +S+S S SSNSS SS ++ SS S SD++
Sbjct: 565 DSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSD----SSDSSDSSDSSDSSDSS 620
Query: 382 PCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSS 441
K+ S+ + S SS + S+ ++N+SNS++ S S SS
Sbjct: 621 DSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSD-SSDSSDSSS 679
Query: 442 SKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S ++ +S S +N S++
Sbjct: 680 SSDSSNSSDSSDSSDSSNSSESSDSSD 706
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 1/159 (0%)
Query: 311 SCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQ 370
S + N + D+ +++ + + + S + S S SSNSS SS+S+
Sbjct: 782 SSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDS 841
Query: 371 SSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKS 430
S SSD + + + S + S +SS + +S+ ++++S+S+N S
Sbjct: 842 SDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSS 901
Query: 431 QHGSARLFRSS-SKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S+ SS S ++ +S S ++ + S+N
Sbjct: 902 DSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSN 940
Score = 40.4 bits (93), Expect = 0.004
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQL 389
++N SE +++ S +S+S SSNS+S SS+++ SS S SD++
Sbjct: 695 SSNSSESSDSSDSSDSDSSDS--SDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNS 752
Query: 390 LCRPSTGNRVGSQDV-----SLESSQAVGKMQSTQTTNTSNSTNKSQHG-SARLFRSSSK 443
+ + S D S +SS + S ++N+S+S++ S S+ SS
Sbjct: 753 SDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDS 812
Query: 444 GFQGTTQTSHGSLMTNKQHQGKSNN 468
+ +S+ S +N S+N
Sbjct: 813 SDSSDSDSSNSSDSSNSSDSSDSSN 837
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D ++N S+ + + S S + S S +S S S+SS + SS+ DSD++
Sbjct: 852 DSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSS----- 906
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
+ N S D S SS + S+ +N+S+S+N S S S
Sbjct: 907 -------DSSNSSDSSDSS-NSSDSSESSNSSDNSNSSDSSNSSD-------SSDSSDSS 951
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
++ +S+ S +N SN+
Sbjct: 952 NSSDSSNSSDSSNSSDSSDSNS 973
Score = 38.5 bits (88), Expect = 0.014
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESL----SKHSSNSSSGPVSSSSATQSSSSDVDSDATP 382
D N+N S+ + + S +S S S SSNSS SS S+ S SSD SD++
Sbjct: 717 DSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSD-SSDSSD 775
Query: 383 CKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQS-------TQTTNTSNSTNKSQHGSA 435
+ N S D S S + S + ++N+S+S+N S +
Sbjct: 776 SSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDS 835
Query: 436 RLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S+S ++ +S GS + SN+
Sbjct: 836 ----SNSSDSSDSSDSSDGSDSDSSNRSDSSNS 864
Score = 38.1 bits (87), Expect = 0.018
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 322 DTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDV----- 376
D+ + +++ N + ++ S S SSNSS SS+S+ S+SSD
Sbjct: 884 DSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSD 943
Query: 377 DSDATPCKTPKQLLCRPSTGNRVGSQDV-SLESSQAVGKMQSTQTTNTSNSTNKSQHGSA 435
SD++ + N S D S +SS + S+ ++++S+S++ S ++
Sbjct: 944 SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNS 1003
Query: 436 RLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S S ++ +S+ S +N S++
Sbjct: 1004 ----SDSSDSSDSSDSSNSSDSSNSSDSSNSSD 1032
Score = 37.7 bits (86), Expect = 0.024
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSS-SGPVSSSSATQSSSSDVDSDATPCKT 385
D N++ S ++ + S S SSNSS S S+SS + SS S SD++
Sbjct: 860 DSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSN 919
Query: 386 PKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGF 445
S + S +SS + S+ ++N+S+S+N S S+ SS
Sbjct: 920 SSD----SSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSD--SSNSSDSSDSNS 973
Query: 446 QGTTQTSHGSLMTNKQHQGKSNN 468
++ +S+ S ++ S++
Sbjct: 974 SDSSDSSNSSDSSDSSDSSDSSD 996
Score = 37.7 bits (86), Expect = 0.024
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D N++ S ++ + + S S SSNSS SS S+ S SSD SD++
Sbjct: 999 DSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSD-SSDSSDSSNS 1057
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
S + S +SS + +S+ ++++SNS++ S + S S
Sbjct: 1058 SD----SSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDS----SDSSDSS 1109
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
++ +S S +N S++
Sbjct: 1110 DSSDSSDSSDSSNSSDSSDSSD 1131
Score = 37.4 bits (85), Expect = 0.031
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 334 SEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRP 393
S+ N + S +S+S +SSNSS SS S+ SSSSD + + +
Sbjct: 643 SDSNSSDSSDNSDSSDS--SNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSE 700
Query: 394 STGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSH 453
S+ + S S +SS + S ++ S+ ++ S + S S S ++ +S
Sbjct: 701 SSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSD 760
Query: 454 GSLMTNKQHQGKSNN 468
S ++ S++
Sbjct: 761 SSNSSDSSDSSDSSD 775
Score = 37.4 bits (85), Expect = 0.031
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D N++ S ++ + S S SSNSS SS S+ S SSD SD++
Sbjct: 1026 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSD-SSDSSDSSES 1084
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
++ + S D S +SS + S+ ++++SNS++ S + S S
Sbjct: 1085 SDSSDSSNSSDSSDSSD-SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDS----SDSSDSS 1139
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
++ +S S ++ S++
Sbjct: 1140 NSSDSSDSSESSDSSDSSDSSD 1161
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D +++ S+ + + ++ S S SSNSS SS S+ S SSD SD++
Sbjct: 709 DSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSD-SSDSSNSSDS 767
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
+ + S D S +SS + S+ ++++SNS++ S S+ S S
Sbjct: 768 SDSSDSSDSSDSSNSSD-SNDSSNSSDSSDSSNSSDSSNSSDSSD--SSDSSDSDSSNSS 824
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
++ +S S +N S++
Sbjct: 825 DSSNSSDSSDSSNSSDSSDSSD 846
Score = 37.0 bits (84), Expect = 0.041
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D +++ S ++ + S S SSNSS SS S+ S SSD SD++
Sbjct: 987 DSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSD-SSDSSDSSDS 1045
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
+ N S D S +SS + S+ ++++S S++ S ++ S S
Sbjct: 1046 SDSSDSSDSSNSSDSSD-SSDSSDSSDSSDSSDSSDSSESSDSSDSSNS----SDSSDSS 1100
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
++ +S S ++ S+N
Sbjct: 1101 DSSDSSDSSDSSDSSDSSDSSN 1122
Score = 36.6 bits (83), Expect = 0.053
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSD-VDSDATPCKT 385
D ++N S+ ++ S S + S SS+SS SSSS+ S+SSD DS + +
Sbjct: 641 DSSDSNSSDSSDNSDSSDSSNSSN-SSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSS 699
Query: 386 PKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGF 445
S + S D S +S S+ ++++SNS++ S + SS
Sbjct: 700 ESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSS 759
Query: 446 QGTTQTSHGSLMTNKQHQGKSNN 468
+ + + SN+
Sbjct: 760 DSSNSSDSSDSSDSSDSSDSSNS 782
Score = 35.0 bits (79), Expect = 0.15
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 322 DTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDAT 381
D+ +++ N + S +S S SNSS SS+S+ S SSD SD++
Sbjct: 937 DSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD-SSDSS 995
Query: 382 PCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSS 441
+ + S D S +SS + S+ ++N+S+S+N S + S
Sbjct: 996 ------------DSSDSSNSSD-SSDSSDSSDSSNSSDSSNSSDSSNSSDSSDS----SD 1038
Query: 442 SKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S ++ +S S +N S++
Sbjct: 1039 SSDSSDSSDSSDSSDSSNSSDSSDSSD 1065
Score = 35.0 bits (79), Expect = 0.15
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 2/142 (1%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D +++ S ++ + S S SSNSS SS S+ S SSD SD++
Sbjct: 1110 DSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSD-SSDSSDSSDS 1168
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQ 446
+ N S D S +SS + S+ ++++S+S++ S + SS
Sbjct: 1169 SDSSDSSDSSNSSDSSD-SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSD 1227
Query: 447 GTTQTSHGSLMTNKQHQGKSNN 468
+ + SN+
Sbjct: 1228 SSDSNESSDSSDSSDSSDSSNS 1249
Score = 35.0 bits (79), Expect = 0.15
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 347 TSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSL 406
+ S S SSNSS SS S+ S SSD SD++ S + S
Sbjct: 1169 SDSSDSSDSSNSSDSSDSSDSSDSSDSSD-SSDSSDSSD-------SSDSSDSSDSSDSS 1220
Query: 407 ESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKS 466
+SS + S +++++S+S++ S ++ SS T+ ++ S +K G +
Sbjct: 1221 DSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNN 1280
Query: 467 N 467
N
Sbjct: 1281 N 1281
Score = 34.7 bits (78), Expect = 0.20
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDV-----DSDATPCK 384
++N S+ + + S +S+S SSNSS SS S+ S SSD SD++
Sbjct: 956 SSNSSDSSNSSDSSDSNSSDS--SDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSS 1013
Query: 385 TPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKG 444
++ + S D S +SS + S+ ++++S+S+N S + S S
Sbjct: 1014 DSSNSSDSSNSSDSSNSSD-SSDSSDSSDSSDSSDSSDSSDSSNSSDSSDS----SDSSD 1068
Query: 445 FQGTTQTSHGSLMTNKQHQGKSNN 468
++ +S S + S+N
Sbjct: 1069 SSDSSDSSDSSDSSESSDSSDSSN 1092
Score = 34.3 bits (77), Expect = 0.26
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 327 DKCNNNLSEENEALGKCRSKTSE-----SLSKHSSNSSSGPVSSSSATQSSSSDVDSDAT 381
D ++N S+ +++ S S S S SSNSS SS S+ S+SSD + +
Sbjct: 967 DSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSS- 1025
Query: 382 PCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNK--SQHGSARLFR 439
+ N S D S +SS + S+ ++++SNS++ S S
Sbjct: 1026 ------------DSSNSSDSSD-SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDS 1072
Query: 440 SSSKGFQGTTQTSHGSLMTNKQHQGKSNN 468
S S ++++S S +N S++
Sbjct: 1073 SDSSDSSDSSESSDSSDSSNSSDSSDSSD 1101
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
D +++ S ++ + S S SSNSS SS S+ S SSD SD++
Sbjct: 1062 DSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSD-SSDSSDSSDS 1120
Query: 387 KQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKS 430
+ + S D S SS + +S+ ++++S+S++ S
Sbjct: 1121 SNSSDSSDSSDSSDSSD-SSNSSDSSDSSESSDSSDSSDSSDSS 1163
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 46.6 bits (109), Expect = 5e-05
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 344 RSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPS---TGNRVG 400
RS +S S S SS+SSS SSSS++ SSSSD + + P + L PS
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAV 2590
Query: 401 SQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 455
+ E + A K +S+ ++++S+S++ S S+ SSS ++ +S S
Sbjct: 2591 REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2645
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPST------GNR 398
S +S S S SS+SSS SSSS++ SSSS S +P K Q L +P++ G R
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGER 2673
Query: 399 VG----------SQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSK 443
SL S + S Q + ++ S+ GS R R S+
Sbjct: 2674 RSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSR 2728
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 44.7 bits (104), Expect = 2e-04
Identities = 34/125 (27%), Positives = 57/125 (45%)
Query: 341 GKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVG 400
G+ R+KTS+S S+ SS+SSS S+SS++ SSSS S + + S+ +
Sbjct: 564 GRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSS 623
Query: 401 SQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNK 460
S S ES + S ++ + ++ L RS G+++ + GS N
Sbjct: 624 STSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNS 683
Query: 461 QHQGK 465
+ K
Sbjct: 684 RSDRK 688
Score = 34.7 bits (78), Expect = 0.20
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 394 STGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSH 453
S G S S + S+ T+++S S++ S S+R SSS G++
Sbjct: 562 SRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDS 621
Query: 454 GSLMTNKQHQGKSNNQYYHGKKRKHKR 480
S ++ + H + RKH+R
Sbjct: 622 SSSTSSSSESRSRSRGRGHNRDRKHRR 648
Score = 34.3 bits (77), Expect = 0.26
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 342 KCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGS 401
K ++KT + N +S S SS++ SSSS ST + GS
Sbjct: 553 KSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSS------------------STSSSSGS 594
Query: 402 QDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQ 461
S SS S+ T+ +S+ + S S+ RS S+G H + K+
Sbjct: 595 SSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKR 654
Query: 462 HQGKSNNQYYHGKKRKHKRD 481
+ + K RD
Sbjct: 655 RDTSGLERSHKSSKGGSSRD 674
Score = 34.3 bits (77), Expect = 0.26
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 12/155 (7%)
Query: 328 KCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPK 387
K + S + + S +S S S S+SS SSSS+T SSS S +T +
Sbjct: 572 KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSES 631
Query: 388 QLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQG 447
+ R NR S++ + T+ S S+ GS+R + S
Sbjct: 632 RSRSRGRGHNRDRKHRRSVDRKR-------RDTSGLERSHKSSKGGSSRDTKGSK---DK 681
Query: 448 TTQTSHGSLMTNKQHQGKSNNQYYHGKK--RKHKR 480
+++ ++ GK +++ +K RK KR
Sbjct: 682 NSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKR 716
Score = 32.3 bits (72), Expect = 1.0
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 11/154 (7%)
Query: 328 KCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPK 387
+ N S+ S +S S S S +SSS SSS ++ SSSS ++
Sbjct: 565 RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS------ 618
Query: 388 QLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQG 447
R S+ + S + S S+ G + + + + + G R +SS G
Sbjct: 619 ----RDSSSSTSSSSE-SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSR 673
Query: 448 TTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKRD 481
T+ S + + + S + + + +RD
Sbjct: 674 DTKGSKDKNSRSDRKRSISESSRSGKRSSRSERD 707
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 338 EALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGN 397
E G +S + + S SSSS + SSSS S + + ++ G
Sbjct: 2536 EDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGC 2595
Query: 398 RVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLM 457
G ++ S SS+A S+ ++++S+S++ S S+ SSS ++ +S S
Sbjct: 2596 GTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2655
Query: 458 TNKQHQGKSNN 468
++ S++
Sbjct: 2656 SSSSSSSSSSS 2666
Score = 37.7 bits (86), Expect = 0.024
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQL 389
+++ S + + S +S S S SS+SSS SSSS++ SSSS + + C + +
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEA 2685
Query: 390 LCRPSTG 396
P+ G
Sbjct: 2686 APAPTAG 2692
Score = 37.0 bits (84), Expect = 0.041
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 343 CRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQ 402
C + +S + S SS+SSS SSSS++ SSSS S ++ + S+ + S
Sbjct: 2602 CSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SSSSSSSSSS 2654
Query: 403 DVSLESSQAVGKMQSTQTTNTSNSTNKSQHGS 434
S SS + S+ TT+ +S + +
Sbjct: 2655 SSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA 2686
Score = 37.0 bits (84), Expect = 0.041
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQL 389
+++ S + + S +S S S SS+SSS SSSS++ SSSS S ++ T +
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDS 2677
Query: 390 LCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSAR 436
C S+ + + S+QA T+ T + S H +
Sbjct: 2678 SC--SSDDEAAPAPTAGPSAQAA---LPTKATKQAGKARPSAHSPGK 2719
Score = 35.8 bits (81), Expect = 0.091
Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 327 DKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSD---------VD 377
D N ++ +A ++ S S S +SSS SSSS +++ +
Sbjct: 2537 DSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCG 2596
Query: 378 SDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARL 437
+ C P++ + S S SS + S+ ++++S+S++ S S+
Sbjct: 2597 TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-- 2654
Query: 438 FRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQ 469
SSS ++ +S S T++ S+++
Sbjct: 2655 --SSSSSSSSSSSSSSSSSTTDEDSSCSSDDE 2684
Score = 35.4 bits (80), Expect = 0.12
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 334 SEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRP 393
S + + S +S S S SS+SSS SSSS++ SSSS S ++ +
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
Query: 394 STGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQ 431
+ S D + + A Q+ T + K++
Sbjct: 2674 DEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKAR 2711
Score = 33.9 bits (76), Expect = 0.34
Identities = 28/137 (20%), Positives = 53/137 (38%)
Query: 299 SKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNS 358
++Q G + S + +G + + EE + G T +S+
Sbjct: 2549 AEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSR 2608
Query: 359 SSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQST 418
++ P SSSS++ SSSS S ++ + S+ + S S SS + S+
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Query: 419 QTTNTSNSTNKSQHGSA 435
++ T ++ S A
Sbjct: 2669 SSSTTDEDSSCSSDDEA 2685
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 352 SKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQA 411
S SS ++S SSSS++ SSSS S ++ + S+ + S S SS +
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662
Query: 412 VGKMQSTQTTNTSNSTNKSQHGSA 435
S+ +T +S+ S +A
Sbjct: 2663 SSSSSSSSSTTDEDSSCSSDDEAA 2686
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 352 SKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQA 411
S+ S+SSS P + S + SS + K+ K L + S+GN Q+ S +S
Sbjct: 643 SRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGG 702
Query: 412 VGKMQSTQT-----TNTSNSTNKSQHGSARLFRS-----SSKGFQGTTQTSHG---SLMT 458
GK + + +++S+S++ S S FR S + T +SH + +T
Sbjct: 703 SGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHSGPPYPSTVTSSHSIGLNCVT 762
Query: 459 NK 460
NK
Sbjct: 763 NK 764
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 352 SKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQA 411
S+ S+SSS P + S + SS + K+ K L + S+GN Q+ S +S
Sbjct: 643 SRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGG 702
Query: 412 VGKMQSTQT-----TNTSNSTNKSQHGSARLFRS-----SSKGFQGTTQTSHG---SLMT 458
GK + + +++S+S++ S S FR S + T +SH + +T
Sbjct: 703 SGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHSGPPYPSTVTSSHSIGLNCVT 762
Query: 459 NK 460
NK
Sbjct: 763 NK 764
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 40.0 bits (92), Expect = 0.005
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 14/164 (8%)
Query: 322 DTQQLDKCNNNLSEENEALGK-----CRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDV 376
D L K N + SEE ++ K RSK+ S S+ SS SSS P SS S ++S S
Sbjct: 176 DDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSS-PSSSRSRSRSRSRSS 234
Query: 377 DSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSAR 436
S + ++ + R S G++ S S S + K +S ++++S N+ + S
Sbjct: 235 SSSQSRSRSSSRERSR-SRGSKSRSSSRSHRGSSSPRK-RSYSSSSSSPERNRKRSRS-- 290
Query: 437 LFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 480
RSSS G + +T S ++H+ S + + + K+
Sbjct: 291 --RSSSSGDRKKRRTR--SRSPERRHRSSSGSSHSGSRSSSKKK 330
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 345 SKTSESLSKHSSNSSSGPVSS--SSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQ 402
S T+ S + ++NS S SS S+AT S SS V S A+ T + S+
Sbjct: 350 SSTTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSE 409
Query: 403 DVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 455
++ S + + TT++ +T + S S + G TSH +
Sbjct: 410 SSTVSSGASTATNSESSTTSSGANTATNSGSSVTSAGSGTAALTGMHTTSHSA 462
Score = 38.5 bits (88), Expect = 0.014
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSS--SSATQSSSSDVDSDATPCKTPK 387
++ S E S T+ S + ++NS S VSS S+AT S SS S A+ +
Sbjct: 155 SSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSGASTATNSE 214
Query: 388 QLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQG 447
+T N G+ S S+ + G ++ TN+ +ST S G+A SS+
Sbjct: 215 SR----TTSNGAGTATNSESSTTSSG---ASTATNSESSTPSSGAGTATNSESSTTSSGA 267
Query: 448 TTQTSHGS 455
T T+ S
Sbjct: 268 GTATNSES 275
Score = 36.6 bits (83), Expect = 0.053
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Query: 309 EPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSA 368
E S +G+++ +++ + + N S S + + SS +SSG +S+A
Sbjct: 94 EFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGASTATNSDSSTTSSG---ASTA 150
Query: 369 TQSSSSDVDSDATPCKTPKQLLCRP--STGNRVGSQDVSLESSQAVGKMQSTQT------ 420
T S SS S+A+ + ST S VS +S A ST +
Sbjct: 151 TNSDSSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSGASTA 210
Query: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 455
TN+ + T + G+A SS+ +T T+ S
Sbjct: 211 TNSESRTTSNGAGTATNSESSTTSSGASTATNSES 245
Score = 33.5 bits (75), Expect = 0.45
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 347 TSESLSKHSSNSSSGPVSS--SSATQSSSSDVDSDATPCKTPKQLL--CRPSTGNRVGSQ 402
TS +S ++NS VSS S AT S SS S A+ + ST S
Sbjct: 83 TSSGIST-ATNSEFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGASTATNSDSS 141
Query: 403 DVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQH 462
S +S A ST ++ S +TN S+ + S++ + +T +S S TN +
Sbjct: 142 TTSSGASTATNSDSSTTSSEASTATN-SESSTTSSGASTATNSESSTVSSRASTATNSES 200
Query: 463 QGKSN 467
S+
Sbjct: 201 STTSS 205
Score = 33.5 bits (75), Expect = 0.45
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 19/173 (10%)
Query: 309 EPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVS--SS 366
E S +G + +++ ++ +S S T+ S + ++NS S S +
Sbjct: 169 ESSTTSSGASTATNSE-----SSTVSSRASTATNSESSTTSSGASTATNSESRTTSNGAG 223
Query: 367 SATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT------ 420
+AT S SS S A+ + PS+G + S +S G ++++
Sbjct: 224 TATNSESSTTSSGASTATNSES--STPSSGAGTATNSESSTTSSGAGTATNSESSTVSSG 281
Query: 421 ----TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQ 469
TN+ +ST S +A SS+ T T+ S T+ +N++
Sbjct: 282 ISTVTNSESSTPSSGANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSE 334
Score = 32.7 bits (73), Expect = 0.77
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 303 GLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGP 362
G E S +G +++ ++ +S + S T S + ++NS S
Sbjct: 253 GTATNSESSTTSSGAGTATNSE-----SSTVSSGISTVTNSESSTPSSGANTATNSESST 307
Query: 363 VSS--SSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 420
SS ++AT S SS S A+ + ST + S + ESS ++
Sbjct: 308 TSSGANTATNSDSSTTSSGASTATNSES-----STTSSGASTATNSESSTT--SSGASTA 360
Query: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQ 469
TN+ +ST S +A SS+ +T T+ S T+ +N++
Sbjct: 361 TNSGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSE 409
Score = 30.8 bits (68), Expect = 2.9
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSAT---QSSSSDVDSDATPCKTPKQLL-CRPSTGNRVG 400
S T+ S + ++NS S SS ++T SS+ +T + + R ST
Sbjct: 140 SSTTSSGASTATNSDSSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSE 199
Query: 401 SQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNK 460
S S +S A +S T+N + + S+ + S++ + +T +S TN
Sbjct: 200 SSTTSSGASTATNS-ESRTTSNGAGTATNSESSTTSSGASTATNSESSTPSSGAGTATNS 258
Query: 461 QHQGKSN 467
+ S+
Sbjct: 259 ESSTTSS 265
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 38.5 bits (88), Expect = 0.014
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Query: 324 QQLDKCNNNLSEENEALGKCRSKTSESLSKH----SSNSSSGPVSSSSATQSSSSDVDSD 379
Q+L + + L ++ + + + K +S SKH SS+SSS SSSS+T++S S +S+
Sbjct: 222 QKLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESE 281
Query: 380 ATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLF- 438
+ K++ + N+ + S + K + +S+ N+ + F
Sbjct: 282 SN--NKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFL 339
Query: 439 --RSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKRD 481
SS + + + S T+K K ++ G R H R+
Sbjct: 340 KHESSREDSKWSHSDSDKKSRTHKHSPEKRGSERKEGSSRSHGRE 384
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 38.1 bits (87), Expect = 0.018
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 270 KYYPNNETESILGRIIRVTDEVATYRDWIS-KQWGLKNRPEPSCNGNGVTLIVDTQQLDK 328
KY + + L RI+R T V W++ ++ +KN P C G T I ++
Sbjct: 5190 KYRFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDP---CRARGRTNIELREKF-- 5244
Query: 329 CNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQ 388
+ E + G ++ SK SS ++S SSSSA+QS+ S ++P
Sbjct: 5245 ----ILPEGASQGMTPFRSRGRRSKPSSRAASPTRSSSSASQSNHSCTSMPSSPATPASG 5300
Query: 389 LLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGS 434
PS+G+++ + SS +++ +TSNS++ + G+
Sbjct: 5301 TKVIPSSGSKLKRPTPTFHSS------RTSLAGDTSNSSSPASTGA 5340
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 37.4 bits (85), Expect = 0.031
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 352 SKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQA 411
S HS +SSG V SSS ++S S S ++ T ++ S G+ S+ SSQ
Sbjct: 1078 SSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQ- 1135
Query: 412 VGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 468
G S+Q+ N+S S K GS+ + + S GS T + QGK ++
Sbjct: 1136 -GSSGSSQSKNSSQSGGKP--GSSPITKHG---------LSSGSSSTKMKPQGKPSS 1180
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDV 404
SK +S S S SSSS +SSS S + KTP ++ + S
Sbjct: 1219 SKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGS 1278
Query: 405 SLESSQ-----AVGKMQS-TQTTNTSNSTNKSQHG---SARLFRSSSKGFQGTTQTSHGS 455
S+ SSQ + GK S + + + +K +HG S G G + S
Sbjct: 1279 SMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPLDGQMGVSTNSSSH 1338
Query: 456 LMTNKQHQGKSNNQYYHGKKRKHKRD 481
M++K + + GK+ K +D
Sbjct: 1339 PMSSKHNMSGGE---FQGKREKSDKD 1361
Score = 30.4 bits (67), Expect = 3.8
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 344 RSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQD 403
+S S S S SS S+SG + SS + SSSS + S S G+ SQ
Sbjct: 1095 KSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKLSSS-----------MYSSQGSSGSSQ- 1142
Query: 404 VSLESSQAVGKMQSTQTTNTSNSTNKS 430
S SSQ+ GK S+ T S+ S
Sbjct: 1143 -SKNSSQSGGKPGSSPITKHGLSSGSS 1168
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 37.4 bits (85), Expect = 0.031
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNR 398
S +S S S SS+SSS SSSS++ SSSS S + P K K+ +PS +R
Sbjct: 159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSR 212
Score = 36.6 bits (83), Expect = 0.053
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL 390
S +S S S SS+SSS SSSS++ SSSS S +T P +L+
Sbjct: 155 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLM 200
Score = 34.7 bits (78), Expect = 0.20
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 335 EENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKT 385
+ N ++ S +S S S SS+SSS SSSS++ SSSS S ++ T
Sbjct: 141 DPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 345 SKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDV 404
+ +S S S SS+SSS SSSS++ SSSS S ++ + +P + +
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKP 207
Query: 405 SLESSQAVGKMQSTQTTNTSNSTNKSQ 431
S +S + + + +S S+
Sbjct: 208 SKDSREHKSAFKEPSRDHNKSSKESSK 234
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDAT 381
NN + L K + S+ SS+SSS SSSS++ SSSS S ++
Sbjct: 125 NNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSS 176
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 37.4 bits (85), Expect = 0.031
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 330 NNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQL 389
+N+ S+E+E KC S SES S + N S S + SD DSD+ +
Sbjct: 1039 SNSDSDEDEQRKKCAS--SESDSDENQNKSGSEAGSPRRPRRQRSDQDSDSDQPSRKR-- 1094
Query: 390 LCRPSTGNRVGSQDV-SLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGT 448
RPS + ++ V S S V + S + ++ S ++S+ GS G +
Sbjct: 1095 --RPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDNEGSGQGSGNESE 1152
Query: 449 TQTSHGSLMTNKQHQGKSNN 468
+ S+ G ++
Sbjct: 1153 PEGSNNEASDRGSEHGSDDS 1172
Score = 30.0 bits (66), Expect = 5.0
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 341 GKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVG 400
GK +SK S S SS+ ++ ++S+S+ DSD + ++ C S +
Sbjct: 1006 GKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSNSDSD----EDEQRKKCASSESDSDE 1061
Query: 401 SQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNK 460
+Q+ S + + + + ++ S+S S+ + G+ Q+ + S+ + +
Sbjct: 1062 NQNKSGSEAGSPRRPRRQRSDQDSDSDQPSR----------KRRPSGSEQSDNESVQSGR 1111
Query: 461 QHQGKSNN 468
H G S N
Sbjct: 1112 SHSGVSEN 1119
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 37.4 bits (85), Expect = 0.031
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 334 SEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRP 393
SE+ GK + K + ++ S + +SA SS+ +S K LL P
Sbjct: 757 SEKVSNKGKRKHKNEDD-NRASESKKPKTEDKNSAGHKPSSNRESSKQSAAKEKDLL--P 813
Query: 394 STGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSH 453
S V S+D E + + + +S+++NK GS++ S+SK + +TS
Sbjct: 814 SPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSS 873
Query: 454 GSLMTNKQHQGKSNN 468
S ++ S+N
Sbjct: 874 SSKEVKEKAPSSSSN 888
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 351 LSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGN-----RVGSQDVS 405
LS H+ + +S +SSS+T SS+S + T + ST + S +S
Sbjct: 103 LSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSIS 162
Query: 406 LESSQAV-GKMQSTQTTNTSNSTNK--------SQHGSARLFRSSSKGFQGTTQTSHGSL 456
+ S+ ++ + ST T+ TS S+N S S S+S F TT TS S
Sbjct: 163 ITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTST 222
Query: 457 MT 458
T
Sbjct: 223 ST 224
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 351 LSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGN-----RVGSQDVS 405
LS H+ + +S +SSS+T SS+S + T + ST + S +S
Sbjct: 103 LSHHTLHITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSIS 162
Query: 406 LESSQAV-GKMQSTQTTNTSNSTNK--------SQHGSARLFRSSSKGFQGTTQTSHGSL 456
+ S+ ++ + ST T+ TS S+N S S S+S F TT TS S
Sbjct: 163 ITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTST 222
Query: 457 MT 458
T
Sbjct: 223 ST 224
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 37.0 bits (84), Expect = 0.041
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 281 LGRIIRVTDEVATYRDWIS-KQWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEA 339
L RI+R T V W++ ++ +KN P C G T I ++ + E +
Sbjct: 5709 LVRILRSTVMVRVGGGWMALDEFLVKNDP---CRARGRTNIELREKF------ILPEGAS 5759
Query: 340 LGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRV 399
G ++ SK SS ++S SSSSA+QS+ S ++P PS+G+++
Sbjct: 5760 QGMTPFRSRGRRSKPSSRAASPTRSSSSASQSNHSCTSMPSSPATPASGTKVIPSSGSKL 5819
Query: 400 GSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGS 434
+ SS +++ +TSNS++ + G+
Sbjct: 5820 KRPTPTFHSS------RTSLAGDTSNSSSPASTGA 5848
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 37.0 bits (84), Expect = 0.041
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 354 HSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVG 413
H S + P + + + S S S A P + + + GN V +++++S+
Sbjct: 129 HVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNINMQSNPVSM 188
Query: 414 KMQSTQTTNTSNSTNKSQHGSAR-LFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQY-- 470
Q T++ S++ SQH + +G QG++ + + Q S+ QY
Sbjct: 189 MQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLG 248
Query: 471 ---YHGKKRKHKRDA 482
Y+G++ H + A
Sbjct: 249 QEEYYGEQYSHSQGA 263
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 36.6 bits (83), Expect = 0.053
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 336 ENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTP 386
EN++ S +S S S SS+SSS SSSS+++SSS D + + P P
Sbjct: 1026 ENDSTSDSESSSSSSSSSSSSSSSSSS-SSSSSSESSSEDEEEEERPAALP 1075
Score = 32.7 bits (73), Expect = 0.77
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 323 TQQLDKCNNNLSEENEALGKCR-----------SKTSESLSKHSSNSSSGPVSSSSATQS 371
T++ + ++ EE+++ KC + SES S SS+SSS SSSS++ S
Sbjct: 997 TKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSS 1056
Query: 372 SSSDVDSDATPCKTPKQL 389
SS D + P L
Sbjct: 1057 SSESSSEDEEEEERPAAL 1074
>gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo
sapiens]
Length = 530
Score = 36.6 bits (83), Expect = 0.053
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 321 VDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSD 375
+D ++ + +N E L SKT E+LSK SS VSS+S++ SSSS+
Sbjct: 404 LDLSEVSEVESNYGATEEDLITSASKTEETLSKKREYQSSSCVSSTSSSYSSSSE 458
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,957,483
Number of Sequences: 37866
Number of extensions: 760904
Number of successful extensions: 4334
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 3053
Number of HSP's gapped (non-prelim): 773
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.