Guide to the Human Genome
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Name: ZCWPW2 Sequence: fasta or formatted (356aa) NCBI GI: 94536776
Description:

zinc finger, CW type with PWWP domain 2

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         15           2
 C cysteine            4.2         15           2
 D aspartate           5.9         21           2
 E glutamate          11.2         40           2
 F phenylalanine       3.1         11           1
 G glycine             3.9         14           1
 H histidine           2.5          9           1
 I isoleucine          4.2         15           1
 K lysine             11.5         41           3
 L leucine             9.0         32           2
 M methionine          2.2          8           1
 N asparagine          5.1         18           2
 P proline             3.9         14           1
 Q glutamine           3.7         13           2
 R arginine            2.8         10           1
 S serine              7.9         28           2
 T threonine           2.8         10           1
 V valine              5.3         19           2
 W tryptophan          2.0          7           1
 Y tyrosine            4.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CW type with PWWP domain 2 
ZCWPW1                0.075   zinc finger, CW type with PWWP domain 1 
MORC3                 0.028   MORC family CW-type zinc finger 3 
MSH6                  0.028   mutS homolog 6 
MORC4                 0.025   zinc finger, CW type with coiled-coil domain 2 isof...
MORC4                 0.025   zinc finger, CW type with coiled-coil domain 2 isof...
MORC2                 0.019   MORC family CW-type zinc finger 2 
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform ...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
WHSC1L1               0.015   WHSC1L1 protein isoform long 
WHSC1L1               0.015   WHSC1L1 protein isoform short 
IK                    0.014   RED protein 
KIF21A                0.014   kinesin family member 21A 
BDP1                  0.014   transcription factor-like nuclear regulator 
OSBP2                 0.014   oxysterol binding protein 2 isoform a 
DST                   0.013   dystonin isoform 1e precursor 
BAZ1A                 0.013   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.013   bromodomain adjacent to zinc finger domain, 1A isofo...
GOLGA8E               0.011   golgi autoantigen, golgin subfamily a, 8E 
HDGF                  0.011   hepatoma-derived growth factor isoform a 
PHF20L1               0.010   PHD finger protein 20-like 1 isoform 1 
ZMYND11               0.010   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.010   zinc finger, MYND domain containing 11 isoform b [H...
ZMYND11               0.010   zinc finger, MYND domain containing 11 isoform a [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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